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Aquifex aeolicus VF5 Organization: SRI International

Abbrev Name: SRI International

Address:
333 Ravenswood Ave.
Menlo Park, CA 94025 USA

Email:

Url: http://bioinformatics.ai.sri.com/

Affiliates: Tom Lee , Tim Holland , Peter D Karp , Quang Ong , Tomer Altman , Malabika Sarker , Huacheng Catherine Ying , Jonathan Wagg , Alex Shearer , Miles Trupp , Ingrid Keseler , Carol A Fulcher , Markus Krummenacker , Suzanne Paley , Deepika Weerasinghe , Anamika Kothari , Ron Caspi , Pallavi Subhraveti

Note: Listed below are contributions the organization has made to Aaeo224324Cyc. They are sorted, with the most recent at the top.

Stats: Pathways: 183, Proteins: 357, RNAs: 45, Reactions: 273, Compounds: 1645, Misc.: 1

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Created:
arginine biosynthesis IV (archaebacteria) on 31-Oct-2013 ,
UDP-D-galactose biosynthesis on 15-Aug-2013 ,
UDP-glucose biosynthesis on 15-Aug-2013 ,
superpathway of adenosine nucleotides de novo biosynthesis I on 18-Feb-2013 ,
superpathway of guanosine nucleotides de novo biosynthesis I on 15-Feb-2013 ,
adenosine deoxyribonucleotides de novo biosynthesis on 15-Feb-2013 ,
guanosine deoxyribonucleotides de novo biosynthesis I on 13-Feb-2013 ,
purine deoxyribonucleosides salvage on 13-Feb-2013 ,
guanosine deoxyribonucleotides de novo biosynthesis II on 13-Feb-2013 ,
guanosine ribonucleotides de novo biosynthesis on 13-Feb-2013 ,
adenosine deoxyribonucleotides de novo biosynthesis II on 13-Feb-2013 ,
adenosine ribonucleotides de novo biosynthesis on 13-Feb-2013 ,
superpathway of pyrimidine nucleobases salvage on 31-Jan-2013 ,
CMP phosphorylation on 30-Jan-2013 ,
pyrimidine deoxyribonucleotide phosphorylation on 28-Jan-2013 ,
pyrimidine deoxyribonucleotides de novo biosynthesis II on 18-Jan-2013 ,
pyrimidine nucleobases salvage I on 15-Jan-2013 ,
2'-deoxy-α-D-ribose 1-phosphate degradation on 08-Jan-2013 ,
purine deoxyribonucleosides degradation on 08-Jan-2013 ,
UTP and CTP de novo biosynthesis on 03-Jan-2013 ,
triclosan resistance on 17-Aug-2012 ,
lipoate salvage II on 31-Jan-2012 ,
ammonia assimilation cycle II on 08-Dec-2011 ,
ammonia assimilation cycle I on 08-Dec-2011 ,
hydroxymethylpyrimidine salvage on 23-Sep-2011 ,
thiamin salvage II on 14-Sep-2011 ,
superpathway of thiamin diphosphate biosynthesis II on 14-Sep-2011 ,
thiamin diphosphate biosynthesis I (E. coli) on 14-Sep-2011 ,
thiamin diphosphate biosynthesis II (Bacillus) on 14-Sep-2011 ,
thiazole biosynthesis I (E. coli) on 14-Sep-2011 ,
thiazole biosynthesis II (Bacillus) on 14-Sep-2011 ,
4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis on 14-Sep-2011 ,
hydrogen production V on 24-Mar-2011 ,
hydrogen production III on 17-Mar-2011 ,
hydrogen production II on 17-Mar-2011 ,
S-methyl-5-thio-α-D-ribose 1-phosphate degradation I on 16-Mar-2011 ,
superpathway of hydrogen production on 15-Mar-2011 ,
hydrogen production I on 04-Mar-2011 ,
queuosine biosynthesis on 24-Jan-2011 ,
tetrahydrofolate biosynthesis on 22-Sep-2010 ,
tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate on 22-Sep-2010 ,
adenine and adenosine salvage III on 21-Sep-2010 ,
guanine and guanosine salvage II on 16-Sep-2010 ,
guanine and guanosine salvage on 20-Aug-2010 ,
8-amino-7-oxononanoate biosynthesis III on 18-Aug-2010 ,
pyrimidine deoxyribonucleotides de novo biosynthesis III on 15-Jul-2010 ,
tRNA processing on 16-Jun-2010 ,
hydrogen oxidation III (anaerobic, NADP) on 07-May-2010 ,
UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-DAP-containing) on 20-Nov-2009 ,
peptidoglycan biosynthesis III (mycobacteria) on 19-Nov-2009 ,
superpathway of fatty acids biosynthesis (E. coli) on 25-Jun-2009 ,
superpathway of unsaturated fatty acids biosynthesis (E. coli) on 25-Jun-2009 ,
palmitoleate biosynthesis I on 24-Jun-2009 ,
superpathway of 5-aminoimidazole ribonucleotide biosynthesis on 18-Jun-2009 ,
3-dehydroquinate biosynthesis I on 17-Mar-2009 ,
chorismate biosynthesis from 3-dehydroquinate on 17-Mar-2009 ,
S-adenosyl-L-methionine cycle I on 09-Mar-2009 ,
gluconeogenesis II (Methanobacterium thermoautotrophicum) on 24-Feb-2009 ,
superpathway of adenosine nucleotides de novo biosynthesis II on 13-Jan-2009 ,
superpathway of guanosine nucleotides de novo biosynthesis II on 13-Jan-2009 ,
inosine-5'-phosphate biosynthesis II on 13-Jan-2009 ,
inosine-5'-phosphate biosynthesis I on 13-Jan-2009 ,
5-aminoimidazole ribonucleotide biosynthesis II on 13-Jan-2009 ,
5-aminoimidazole ribonucleotide biosynthesis I on 13-Jan-2009 ,
glycerol-3-phosphate shuttle on 22-Dec-2008 ,
dimethyl sulfoxide degradation on 22-Sep-2008 ,
acyl carrier protein metabolism II on 13-Aug-2008 ,
stearate biosynthesis II (bacteria and plants) on 31-Jul-2008 ,
cis-vaccenate biosynthesis on 11-Jul-2008 ,
palmitate biosynthesis II (bacteria and plants) on 10-Jul-2008 ,
asparagine biosynthesis III (tRNA-dependent) on 02-Jul-2008 ,
NADH to cytochrome bd oxidase electron transfer on 26-Jun-2008 ,
glycogen degradation II on 28-May-2008 ,
L-glutamine biosynthesis II (tRNA-dependent) on 07-May-2008 ,
superpathay of heme biosynthesis from glutamate on 07-May-2008 ,
urate biosynthesis/inosine 5'-phosphate degradation on 29-Oct-2007 ,
UMP biosynthesis on 24-Oct-2007 ,
nitrate reduction V (assimilatory) on 17-Oct-2007 ,
nitrate reduction IV (dissimilatory) on 17-Oct-2007 ,
CDP-diacylglycerol biosynthesis I on 10-Oct-2007 ,
GDP-mannose biosynthesis on 13-Sep-2007 ,
NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde on 07-Sep-2007 ,
reductive TCA cycle II on 08-Nov-2006 ,
hydrogen oxidation II (aerobic, NAD) on 16-Oct-2006 ,
sulfur reduction II (via polysulfide) on 04-Oct-2006 ,
thiosulfate disproportionation III (rhodanese) on 29-Sep-2006 ,
sulfate activation for sulfonation on 19-Sep-2006 ,
sulfur disproportionation II (aerobic) on 29-Aug-2006 ,
sulfide oxidation II (sulfide dehydrogenase) on 03-Aug-2006 ,
siroheme biosynthesis on 15-May-2006 ,
tetrapyrrole biosynthesis I (from glutamate) on 15-May-2006 ,
β-alanine biosynthesis III on 14-Apr-2006 ,
biotin-carboxyl carrier protein assembly on 01-Feb-2006 ,
2-oxoglutarate decarboxylation to succinyl-CoA on 16-Jan-2006 ,
valine degradation II on 06-Dec-2005 ,
putrescine biosynthesis III on 10-Oct-2005 ,
creatinine degradation II on 08-Sep-2005 ,
arsenate detoxification II (glutaredoxin) on 06-Sep-2005 ,
anhydromuropeptides recycling on 02-Sep-2005 ,
isoleucine biosynthesis I on 03-Mar-2005 ,
myo-inositol biosynthesis on 17-Nov-2004 ,
folate transformations I on 05-Nov-2004 ,
folate polyglutamylation on 02-Nov-2004 ,
formate oxidation to CO2 on 08-Sep-2004 ,
ethanol degradation II on 16-Aug-2004 ,
glutamate biosynthesis III on 15-Oct-2003 ,
phosphopantothenate biosynthesis I on 07-Oct-2003 ,
cyclopropane fatty acid (CFA) biosynthesis on 14-Apr-2003 ,
lipoate salvage I on 02-Apr-2003 ,
lipoate biosynthesis and incorporation I on 26-Mar-2003 ,
superpathway of pyrimidine ribonucleotides de novo biosynthesis on 23-Jan-2003 ,
xanthine and xanthosine salvage on 17-Dec-2002 ,
superpathway of purine nucleotides de novo biosynthesis II on 17-Dec-2002 ,
sucrose biosynthesis I (from photosynthesis) on 30-Jul-1999 ,
methionine degradation I (to homocysteine) on 15-Mar-1999 ,
glutamine degradation II on 15-Jan-1999 ,
ornithine biosynthesis on 15-Jan-1999 ,
homoserine biosynthesis on 14-Oct-1998 ,
citrulline degradation on 20-Sep-1998 ,
methionine biosynthesis III on 28-Jul-1998 ,
heme biosynthesis from uroporphyrinogen-III I (aerobic) on 12-Jun-1998

Revised:
acyl carrier protein metabolism II on 04-Dec-2013 ,
anhydromuropeptides recycling on 15-Oct-2013 ,
sucrose biosynthesis I (from photosynthesis) on 19-Aug-2013 ,
sucrose degradation II (sucrose synthase) on 16-Aug-2013 ,
glycine biosynthesis II on 12-Jun-2013 ,
cis-vaccenate biosynthesis on 13-May-2013 ,
superpathway of purine nucleotides de novo biosynthesis I on 15-Feb-2013 ,
pyrimidine deoxyribonucleotides de novo biosynthesis III on 21-Jan-2013 ,
superpathway of pyrimidine ribonucleotides de novo biosynthesis on 04-Jan-2013 ,
UMP biosynthesis on 04-Jan-2013 ,
8-amino-7-oxononanoate biosynthesis III on 22-Oct-2012 ,
fatty acid elongation -- saturated on 15-Aug-2012 ,
chorismate biosynthesis from 3-dehydroquinate on 05-Mar-2012 ,
TCA cycle I (prokaryotic) on 19-Dec-2011 ,
superpathway of ammonia assimilation (plants) on 08-Dec-2011 ,
glycerol degradation I on 09-Nov-2011 ,
superpathway of thiamin diphosphate biosynthesis I on 14-Sep-2011 ,
methylerythritol phosphate pathway on 15-Apr-2011 ,
hydrogen production I on 04-Mar-2011 ,
xanthine and xanthosine salvage on 21-Sep-2010 ,
adenine and adenosine salvage I on 16-Sep-2010 ,
peptidoglycan biosynthesis III (mycobacteria) on 08-Mar-2010 ,
peptidoglycan biosynthesis I (meso-diaminopimelate containing) on 08-Mar-2010 ,
chorismate biosynthesis I on 04-Aug-2009 ,
heme biosynthesis from uroporphyrinogen-III II (anaerobic) on 09-Jul-2009 ,
superpathway of heme biosynthesis from uroporphyrinogen-III on 12-Jun-2009 ,
S-adenosyl-L-methionine cycle II on 09-Mar-2009 ,
superoxide radicals degradation on 20-Feb-2009 ,
glutamate biosynthesis V on 19-Feb-2009 ,
histidine biosynthesis on 10-Oct-2008 ,
CDP-diacylglycerol biosynthesis I on 29-Jul-2008 ,
fatty acid biosynthesis initiation I on 07-Jul-2008 ,
D-mannose degradation on 27-Jun-2008 ,
geranylgeranyl diphosphate biosynthesis on 01-May-2008 ,
glycine biosynthesis I on 07-Jan-2008 ,
leucine biosynthesis on 20-Dec-2007 ,
fatty acid activation on 09-Oct-2007 ,
glutamine biosynthesis I on 11-Apr-2007 ,
cyanate degradation on 20-Mar-2007 ,
glutamine degradation II on 13-Mar-2007 ,
glutamine degradation I on 08-Mar-2007 ,
reductive acetyl coenzyme A pathway on 08-Mar-2007 ,
aspartate biosynthesis on 05-Mar-2007 ,
aspartate degradation II on 01-Mar-2007 ,
aspartate degradation I on 01-Mar-2007 ,
glycine cleavage on 31-Jan-2007 ,
hydrogen oxidation I (aerobic) on 19-Oct-2006 ,
methionine degradation I (to homocysteine) on 13-Sep-2006 ,
sulfide oxidation I (sulfide-quinone reductase) on 10-Jul-2006 ,
heme biosynthesis from uroporphyrinogen-III I (aerobic) on 15-May-2006 ,
lipoate biosynthesis and incorporation I on 08-May-2006 ,
lipoate salvage I on 08-May-2006 ,
arginine biosynthesis I (via L-ornithine) on 14-Apr-2006 ,
ornithine biosynthesis on 14-Apr-2006 ,
arginine biosynthesis II (acetyl cycle) on 14-Apr-2006 ,
spermidine biosynthesis I on 31-Oct-2005 ,
biotin biosynthesis from 8-amino-7-oxononanoate I on 29-Sep-2005 ,
citrulline degradation on 22-Sep-2005 ,
NAD salvage pathway I on 09-May-2005 ,
NAD biosynthesis I (from aspartate) on 09-May-2005

Reviewed:
pyridoxal 5'-phosphate biosynthesis I on 15-Mar-2010 ,
glutamate biosynthesis IV on 03-Apr-2006


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Page generated by SRI International Pathway Tools version 19.0 on Fri Jul 31, 2015, biocyc12.