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Aquifex aeolicus VF5 Organization: SRI International

Abbrev Name: SRI International

Address:
333 Ravenswood Ave.
Menlo Park, CA 94025 USA

Email:

Url: http://bioinformatics.ai.sri.com/

Affiliates: Tom Lee, Tim Holland, Peter D Karp, Quang Ong, Tomer Altman, Malabika Sarker, Huacheng Catherine Ying, Jonathan Wagg, Alex Shearer, Miles Trupp, Ingrid Keseler, Carol A Fulcher, Markus Krummenacker, Suzanne Paley, Deepika Weerasinghe, Anamika Kothari, Ron Caspi, Pallavi Subhraveti

Note: Listed below are contributions the organization has made to Aaeo224324Cyc. They are sorted, with the most recent at the top.

Stats: Pathways: 183, Proteins: 474, RNAs: 47, Reactions: 273, Compounds: 1825, Misc.: 1

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Created:
arginine biosynthesis IV (archaebacteria) on 31-Oct-2013,
UDP-D-galactose biosynthesis on 15-Aug-2013,
UDP-glucose biosynthesis on 15-Aug-2013,
superpathway of adenosine nucleotides de novo biosynthesis I on 18-Feb-2013,
superpathway of guanosine nucleotides de novo biosynthesis I on 15-Feb-2013,
adenosine deoxyribonucleotides de novo biosynthesis on 15-Feb-2013,
guanosine deoxyribonucleotides de novo biosynthesis I on 13-Feb-2013,
purine deoxyribonucleosides salvage on 13-Feb-2013,
guanosine deoxyribonucleotides de novo biosynthesis II on 13-Feb-2013,
guanosine ribonucleotides de novo biosynthesis on 13-Feb-2013,
adenosine deoxyribonucleotides de novo biosynthesis II on 13-Feb-2013,
adenosine ribonucleotides de novo biosynthesis on 13-Feb-2013,
superpathway of pyrimidine nucleobases salvage on 31-Jan-2013,
CMP phosphorylation on 30-Jan-2013,
pyrimidine deoxyribonucleotide phosphorylation on 28-Jan-2013,
pyrimidine deoxyribonucleotides de novo biosynthesis II on 18-Jan-2013,
pyrimidine nucleobases salvage I on 15-Jan-2013,
2'-deoxy-α-D-ribose 1-phosphate degradation on 08-Jan-2013,
purine deoxyribonucleosides degradation on 08-Jan-2013,
UTP and CTP de novo biosynthesis on 03-Jan-2013,
triclosan resistance on 17-Aug-2012,
lipoate salvage II on 31-Jan-2012,
ammonia assimilation cycle II on 08-Dec-2011,
ammonia assimilation cycle I on 08-Dec-2011,
hydroxymethylpyrimidine salvage on 23-Sep-2011,
thiamin salvage II on 14-Sep-2011,
superpathway of thiamin diphosphate biosynthesis II on 14-Sep-2011,
thiamin diphosphate biosynthesis I (E. coli) on 14-Sep-2011,
thiamin diphosphate biosynthesis II (Bacillus) on 14-Sep-2011,
thiazole biosynthesis I (E. coli) on 14-Sep-2011,
thiazole biosynthesis II (Bacillus) on 14-Sep-2011,
4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis on 14-Sep-2011,
hydrogen production V on 24-Mar-2011,
hydrogen production III on 17-Mar-2011,
hydrogen production II on 17-Mar-2011,
S-methyl-5-thio-α-D-ribose 1-phosphate degradation I on 16-Mar-2011,
superpathway of hydrogen production on 15-Mar-2011,
hydrogen production I on 04-Mar-2011,
queuosine biosynthesis on 24-Jan-2011,
tetrahydrofolate biosynthesis on 22-Sep-2010,
tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate on 22-Sep-2010,
adenine and adenosine salvage III on 21-Sep-2010,
guanine and guanosine salvage II on 16-Sep-2010,
guanine and guanosine salvage on 20-Aug-2010,
8-amino-7-oxononanoate biosynthesis III on 18-Aug-2010,
pyrimidine deoxyribonucleotides de novo biosynthesis III on 15-Jul-2010,
tRNA processing on 16-Jun-2010,
hydrogen oxidation III (anaerobic, NADP) on 07-May-2010,
UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-DAP-containing) on 20-Nov-2009,
peptidoglycan biosynthesis III (mycobacteria) on 19-Nov-2009,
superpathway of fatty acids biosynthesis (E. coli) on 25-Jun-2009,
superpathway of unsaturated fatty acids biosynthesis (E. coli) on 25-Jun-2009,
palmitoleate biosynthesis I on 24-Jun-2009,
superpathway of 5-aminoimidazole ribonucleotide biosynthesis on 18-Jun-2009,
3-dehydroquinate biosynthesis I on 17-Mar-2009,
chorismate biosynthesis from 3-dehydroquinate on 17-Mar-2009,
S-adenosyl-L-methionine cycle I on 09-Mar-2009,
gluconeogenesis II (Methanobacterium thermoautotrophicum) on 24-Feb-2009,
superpathway of adenosine nucleotides de novo biosynthesis II on 13-Jan-2009,
superpathway of guanosine nucleotides de novo biosynthesis II on 13-Jan-2009,
inosine-5'-phosphate biosynthesis II on 13-Jan-2009,
inosine-5'-phosphate biosynthesis I on 13-Jan-2009,
5-aminoimidazole ribonucleotide biosynthesis II on 13-Jan-2009,
5-aminoimidazole ribonucleotide biosynthesis I on 13-Jan-2009,
glycerol-3-phosphate shuttle on 22-Dec-2008,
dimethyl sulfoxide degradation on 22-Sep-2008,
acyl carrier protein metabolism II on 13-Aug-2008,
stearate biosynthesis II (bacteria and plants) on 31-Jul-2008,
cis-vaccenate biosynthesis on 11-Jul-2008,
palmitate biosynthesis II (bacteria and plants) on 10-Jul-2008,
asparagine biosynthesis III (tRNA-dependent) on 02-Jul-2008,
NADH to cytochrome bd oxidase electron transfer on 26-Jun-2008,
glycogen degradation II on 28-May-2008,
L-glutamine biosynthesis II (tRNA-dependent) on 07-May-2008,
superpathay of heme biosynthesis from glutamate on 07-May-2008,
urate biosynthesis/inosine 5'-phosphate degradation on 29-Oct-2007,
UMP biosynthesis on 24-Oct-2007,
nitrate reduction V (assimilatory) on 17-Oct-2007,
nitrate reduction IV (dissimilatory) on 17-Oct-2007,
CDP-diacylglycerol biosynthesis I on 10-Oct-2007,
GDP-mannose biosynthesis on 13-Sep-2007,
NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde on 07-Sep-2007,
reductive TCA cycle II on 08-Nov-2006,
hydrogen oxidation II (aerobic, NAD) on 16-Oct-2006,
sulfur reduction II (via polysulfide) on 04-Oct-2006,
thiosulfate disproportionation III (rhodanese) on 29-Sep-2006,
sulfate activation for sulfonation on 19-Sep-2006,
sulfur disproportionation II (aerobic) on 29-Aug-2006,
sulfide oxidation II (sulfide dehydrogenase) on 03-Aug-2006,
siroheme biosynthesis on 15-May-2006,
tetrapyrrole biosynthesis I (from glutamate) on 15-May-2006,
β-alanine biosynthesis III on 14-Apr-2006,
biotin-carboxyl carrier protein assembly on 01-Feb-2006,
2-oxoglutarate decarboxylation to succinyl-CoA on 16-Jan-2006,
valine degradation II on 06-Dec-2005,
putrescine biosynthesis III on 10-Oct-2005,
creatinine degradation II on 08-Sep-2005,
arsenate detoxification II (glutaredoxin) on 06-Sep-2005,
anhydromuropeptides recycling on 02-Sep-2005,
isoleucine biosynthesis I on 03-Mar-2005,
myo-inositol biosynthesis on 17-Nov-2004,
folate transformations I on 05-Nov-2004,
folate polyglutamylation on 02-Nov-2004,
formate oxidation to CO2 on 08-Sep-2004,
ethanol degradation II on 16-Aug-2004,
glutamate biosynthesis III on 15-Oct-2003,
phosphopantothenate biosynthesis I on 07-Oct-2003,
cyclopropane fatty acid (CFA) biosynthesis on 14-Apr-2003,
lipoate salvage I on 02-Apr-2003,
lipoate biosynthesis and incorporation I on 26-Mar-2003,
superpathway of pyrimidine ribonucleotides de novo biosynthesis on 23-Jan-2003,
xanthine and xanthosine salvage on 17-Dec-2002,
superpathway of purine nucleotides de novo biosynthesis II on 17-Dec-2002,
sucrose biosynthesis I (from photosynthesis) on 30-Jul-1999,
methionine degradation I (to homocysteine) on 15-Mar-1999,
glutamine degradation II on 15-Jan-1999,
ornithine biosynthesis on 15-Jan-1999,
homoserine biosynthesis on 14-Oct-1998,
citrulline degradation on 20-Sep-1998,
methionine biosynthesis III on 28-Jul-1998,
heme biosynthesis from uroporphyrinogen-III I (aerobic) on 12-Jun-1998

Revised:
acyl carrier protein metabolism II on 04-Dec-2013,
anhydromuropeptides recycling on 15-Oct-2013,
sucrose biosynthesis I (from photosynthesis) on 19-Aug-2013,
sucrose degradation II (sucrose synthase) on 16-Aug-2013,
glycine biosynthesis II on 12-Jun-2013,
cis-vaccenate biosynthesis on 13-May-2013,
superpathway of purine nucleotides de novo biosynthesis I on 15-Feb-2013,
pyrimidine deoxyribonucleotides de novo biosynthesis III on 21-Jan-2013,
superpathway of pyrimidine ribonucleotides de novo biosynthesis on 04-Jan-2013,
UMP biosynthesis on 04-Jan-2013,
8-amino-7-oxononanoate biosynthesis III on 22-Oct-2012,
fatty acid elongation -- saturated on 15-Aug-2012,
chorismate biosynthesis from 3-dehydroquinate on 05-Mar-2012,
TCA cycle I (prokaryotic) on 19-Dec-2011,
superpathway of ammonia assimilation (plants) on 08-Dec-2011,
glycerol degradation I on 09-Nov-2011,
superpathway of thiamin diphosphate biosynthesis I on 14-Sep-2011,
methylerythritol phosphate pathway on 15-Apr-2011,
hydrogen production I on 04-Mar-2011,
xanthine and xanthosine salvage on 21-Sep-2010,
adenine and adenosine salvage I on 16-Sep-2010,
peptidoglycan biosynthesis III (mycobacteria) on 08-Mar-2010,
peptidoglycan biosynthesis I (meso-diaminopimelate containing) on 08-Mar-2010,
chorismate biosynthesis I on 04-Aug-2009,
heme biosynthesis from uroporphyrinogen-III II (anaerobic) on 09-Jul-2009,
superpathway of heme biosynthesis from uroporphyrinogen-III on 12-Jun-2009,
S-adenosyl-L-methionine cycle II on 09-Mar-2009,
superoxide radicals degradation on 20-Feb-2009,
glutamate biosynthesis V on 19-Feb-2009,
histidine biosynthesis on 10-Oct-2008,
CDP-diacylglycerol biosynthesis I on 29-Jul-2008,
fatty acid biosynthesis initiation I on 07-Jul-2008,
D-mannose degradation on 27-Jun-2008,
geranylgeranyl diphosphate biosynthesis on 01-May-2008,
glycine biosynthesis I on 07-Jan-2008,
leucine biosynthesis on 20-Dec-2007,
fatty acid activation on 09-Oct-2007,
glutamine biosynthesis I on 11-Apr-2007,
cyanate degradation on 20-Mar-2007,
glutamine degradation II on 13-Mar-2007,
glutamine degradation I on 08-Mar-2007,
reductive acetyl coenzyme A pathway on 08-Mar-2007,
aspartate biosynthesis on 05-Mar-2007,
aspartate degradation II on 01-Mar-2007,
aspartate degradation I on 01-Mar-2007,
glycine cleavage on 31-Jan-2007,
hydrogen oxidation I (aerobic) on 19-Oct-2006,
methionine degradation I (to homocysteine) on 13-Sep-2006,
sulfide oxidation I (sulfide-quinone reductase) on 10-Jul-2006,
heme biosynthesis from uroporphyrinogen-III I (aerobic) on 15-May-2006,
lipoate biosynthesis and incorporation I on 08-May-2006,
lipoate salvage I on 08-May-2006,
arginine biosynthesis I (via L-ornithine) on 14-Apr-2006,
ornithine biosynthesis on 14-Apr-2006,
arginine biosynthesis II (acetyl cycle) on 14-Apr-2006,
spermidine biosynthesis I on 31-Oct-2005,
biotin biosynthesis from 8-amino-7-oxononanoate I on 29-Sep-2005,
citrulline degradation on 22-Sep-2005,
NAD salvage pathway I on 09-May-2005,
NAD biosynthesis I (from aspartate) on 09-May-2005

Reviewed:
pyridoxal 5'-phosphate biosynthesis I on 15-Mar-2010,
glutamate biosynthesis IV on 03-Apr-2006


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