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Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Summary of Bacillus anthracis, Strain Ames, version 18.5

Authors: J. Bashkin1, Jonathan Wagg1, Nan Guo1, Peter Karp1, Ron Caspi1

1SRI International

Summary:
The primary data source for this dataset was the full genome sequence of Bacillus anthracis Ames (Nature 423 (6935), 81-86 2003), derived from Genbank accession NC_003997. This dataset was created using the PathoLogic program [Karp99], as applied to that Genbank accession.

Taxonomic lineage: cellular organisms , Bacteria , Firmicutes , Bacilli , Bacillales , Bacillaceae , Bacillus , Bacillus cereus group , Bacillus anthracis , Bacillus anthracis Ames

Unification Links: GOLD:Gp0000640 , NCBI-Taxonomy:198094

Organism or Sample Properties
Relationship To Oxygenfacultative
Trophic Levelheterotroph
Temperature Rangemesophile
Biotic Relationshipfree-living
Pathogenicityanimal
human

RepliconTotal GenesProtein GenesRNA GenesPseudogenesSize (bp)NCBI Link
Ames Plasmid PX0120420400181,677
Ames Plasmid PX021041040094,830
Chromosome 15439531112805,227,293
Total:5747561912805,503,800

Pathways:231
Enzymatic Reactions:1331
Transport Reactions:199
Polypeptides:5625
Protein Complexes:73
Enzymes:1126
Transporters:229
Compounds:1011
Transcription Units:4075
tRNAs:99

Genetic Code Number:
11 -- Bacterial and Plant Plastid (same as Standard, except for alternate initiation codons)

PGDB Unique ID: FG

Copyright 2004-2012, SRI International.


References

Karp99: Karp PD, Krummenacker M, Paley S, Wagg J (1999). "Integrated pathway-genome databases and their role in drug discovery." Trends Biotechnol 17(7);275-81. PMID: 10370234


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