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Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
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Escherichia coli K-12 substr. MG1655 All-Genes Class: carbon compounds

Parent Classes:
carbon utilization

Instances:
aceE (subunit of E1p component of pyruvate dehydrogenase complex) ,
aceF (AceF-dihydrolipoate) ,
ackA (acetate kinase) ,
acnB (bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase) ,
acs (acetyl-CoA synthetase (AMP-forming)) ,
aes (acetyl esterase) ,
aldA ,
aldB ,
alsA (D-allose ABC transporter - ATP binding subunit) ,
alsB (D-allose ABC transporter - periplasmic binding protein) ,
alsC (D-allose ABC transporter - membrane subunit) ,
alsE (allulose-6-phosphate 3-epimerase) ,
alsK (D-allose kinase) ,
amyA (α-amylase) ,
araA (L-arabinose isomerase monomer) ,
araB (L-ribulokinase monomer) ,
araC ,
araD (L-ribulose 5-phosphate 4-epimerase monomer) ,
araE (arabinose:H+ symporter) ,
araF (arabinose ABC transporter - periplasmic binding protein) ,
araG (arabinose ABC transporter - ATP binding subunit) ,
araH (arabinose ABC transporter - membrane subunit) ,
araJ (putative transport protein) ,
ascB (6-phospho-β-glucosidase; cryptic) ,
ascF ,
ascG (AscG DNA-binding transcriptional repressor) ,
bglA (6-phospho-β-glucosidase A) ,
bglB (6-phospho-β-glucosidase B; cryptic) ,
bglF ,
bglG (BglG transcriptional antiterminator (monomer)) ,
bglJ (BglJ DNA-binding transcriptional regulator) ,
bglX (β-D-glucoside glucohydrolase, periplasmic) ,
caiT ,
chbA (chitobiose PTS permease - ChbA subunit) ,
chbB (chitobiose PTS permease - ChbB subunit) ,
chbC (chitobiose PTS permease - ChbC subunit) ,
chbF (monoacetylchitobiose-6-phosphate hydrolase) ,
chbR (ChbR DNA-binding transcriptional dual regulator) ,
citT (citrate:succinate antiporter) ,
cpsB (mannose-1-phosphate guanylyltransferase) ,
crr (Enzyme IIAGlc; Crr) ,
csrA (carbon storage regulator; pleiotropic regulatory protein for carbon source metabolism) ,
dctA (C4 dicarboxylate / orotate:H+ symporter) ,
dcuA (dicarboxylate transporter DcuA) ,
dcuB (dicarboxylate transporter DcuB) ,
dcuC (dicarboxylate transporter DcuC) ,
dgoA (2-oxo-3-deoxygalactonate 6-phosphate aldolase) ,
dgoD (D-galactonate dehydratase) ,
dgoK (2-dehydro-3-deoxygalactonate kinase) ,
dgoR (predicted DNA-binding transcriptional regulator) ,
dhaK (dihydroxyacetone kinase subunit K) ,
dhaL (dihydroxyacetone kinase subunit L) ,
dhaM (dihydroxyacetone kinase subunit M) ,
dkgA (methylglyoxal reductase [multifunctional]) ,
dkgB (methylglyoxal reductase [multifunctional]) ,
dmlA (D-malate / 3-isopropylmalate dehydrogenase (decarboxylating)) ,
ebgA (evolved β-D-galactosidase, α subunit; cryptic gene) ,
ebgC (evolved β-D-galactosidase, β subunit; cryptic gene) ,
ebgR (EbgR DNA-binding transcriptional repressor) ,
eda ,
exuR (ExuR DNA-binding transcriptional repressor) ,
exuT (hexuronate transporter) ,
fbaA (fructose bisphosphate aldolase monomer) ,
focA ,
frlB (fructoselysine 6-phosphate deglycase monomer) ,
frlC (fructoselysine 3-epimerase) ,
frlD (fructoselysine 6-kinase) ,
fruA (fructose PTS permease - FruA subunit) ,
fruB (FruB - his299 phosphorylated) ,
frvA (predicted PTS permease - FrvA subunit) ,
frwB (predicted PTS permease - FrwB subunit) ,
frwD (predicted PTS permease - FrwD subunit) ,
fryC (predicted PTS permease - FryC subunit) ,
fucA ,
fucI ,
fucK (L-fuculokinase) ,
fucO (L-1,2-propanediol oxidoreductase) ,
fucP (fucose:H+ symporter) ,
fucR (FucR transcriptional activator) ,
fucU (L-fucose mutarotase) ,
gabP (4-aminobutyrate:H+ symporter) ,
galE (UDP-glucose 4-epimerase monomer) ,
galK (galactokinase) ,
galM (galactose-1-epimerase) ,
galP (galactose:H+ symporter) ,
galR (GalR DNA-binding transcriptional dual regulator) ,
galS (GalS DNA-binding transcriptional dual regulator) ,
galT (galactose-1-phosphate uridylyltransferase) ,
galU (UTP--glucose-1-phosphate uridylyltransferase) ,
garD (galactarate dehydratase) ,
garK (glycerate kinase I) ,
garL ,
garP (galactarate / glucarate / glycerate transporter GarP) ,
garR (tartronate semialdehyde reductase) ,
gatA (galactitol PTS permease - GatA subunit) ,
gatB (galactitol PTS permease - GatB subunit) ,
gatC (galactitol PTS permease - GatC subunit) ,
gatD (galactitol-1-phosphate dehydrogenase) ,
gatY ,
gatZ ,
gcd (quinoprotein glucose dehydrogenase) ,
ghrB ,
glcA (glycolate / lactate:H+ symporter) ,
glcB (malate synthase G) ,
glcC (GlcC transcriptional dual regulator) ,
glgP ,
glgX (glycogen phosphorylase-limit dextrin α-1,6-glucohydrolase) ,
glk (glucokinase) ,
glvG (predicted phospho-glucosidase, truncated) ,
glxK (glycerate kinase II) ,
glxR (tartronate semialdehyde reductase 2) ,
gnd ,
gpmM (2,3-bisphosphoglycerate-independent phosphoglycerate mutase) ,
gudD (D-glucarate dehydratase) ,
gudP (galactarate / glucarate / glycerate transporter GudP) ,
gudX (glucarate dehydratase-related protein) ,
gutM (GutM DNA-binding transcriptional activator) ,
hcaB (2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase) ,
hcaC (3-phenylpropionate dioxygenase, predicted ferredoxin subunit) ,
hcaD (3-phenylpropionate dioxygenase, predicted ferredoxin reductase subunit) ,
hcaE (3-phenylpropionate dioxygenase, α subunit) ,
hcaF (3-phenylpropionate dioxygenase, β subunit) ,
hcaR (HcaR transcriptional dual regulator) ,
idnD (L-idonate 5-dehydrogenase) ,
idnK (D-gluconate kinase, thermosensitive) ,
idnO (5-keto-D-gluconate 5-reductase) ,
idnR (IdnR transcriptional regulator) ,
kbaY ,
kbaZ ,
kdgK (2-keto-3-deoxygluconokinase) ,
kdgT (2-dehydro-3-deoxy-D-gluconate:H+ symporter) ,
kduI (predicted 5-keto 4-deoxyuronate isomerase monomer) ,
kgtP (α-ketoglutarate:H+ symporter) ,
lacA (galactoside O-acetyltransferase monomer) ,
lacI (LacI DNA-binding transcriptional repressor) ,
lacY (lactose / melibiose:H+ symporter LacY) ,
lacZ (β-galactosidase monomer) ,
ldcC ,
lgoD (L-galactonate oxidoreductase) ,
lldP ((R)-lactate / (S)-lactate / glycolate:H+ symporter LldP) ,
lpd (E3 monomer) ,
lyxK (L-xylulose kinase) ,
mak (manno(fructo)kinase) ,
malF (maltose ABC transporter - membrane subunit) ,
malG (maltose ABC transporter - membrane subunit) ,
malI (MalI DNA-binding transcriptional repressor) ,
malK (maltose ABC transporter - ATP binding subunit) ,
malM (maltose regulon periplasmic protein) ,
malP (maltodextrin phosphorylase monomer) ,
malQ (amylomaltase) ,
malS (α-amylase) ,
malT (MalT transcriptional activator) ,
malX (MalX PTS permease) ,
malY (bifunctional β-cystathionase, PLP-dependent and regulator of maltose regulon) ,
malZ (maltodextrin glucosidase) ,
manA (mannose-6-phosphate isomerase) ,
manX (mannose PTS permease - ManX subunit) ,
manY (mannose PTS permease - ManY subunit) ,
manZ (mannose PTS permease - ManZ subunit) ,
mdh (malate dehydrogenase) ,
melA (α-galactosidase monomer) ,
melB (melibiose:H+/Na+/Li+ symporter) ,
melR (MelR DNA-binding transcriptional dual regulator) ,
mglA (galactose ABC transporter - ATP binding subunit) ,
mglB (galactose ABC transporter - periplasmic binding protein) ,
mglC (galactose ABC transporter - membrane subunit) ,
mhpA (3-(3-hydroxyphenyl)propionate 2-hydroxylase) ,
mhpC (2-hydroxy-6-ketonona-2,4-dienedioate hydrolase) ,
mhpD ,
mhpE (4-hydroxy-2-ketovalerate aldolase) ,
mhpF (acetaldehyde dehydrogenase 2) ,
mngA (2-O-α-mannosyl-D-glycerate PTS permease) ,
mngB (α-mannosidase) ,
mtlA ,
mtlD (mannitol-1-phosphate 5-dehydrogenase) ,
mtlR (MtlR DNA-binding transcriptional repressor) ,
murP (N-acetylmuramic acid PTS permease / anhydro-N-acetylmuramic acid permease) ,
nanM (N-acetylneuraminate mutarotase) ,
nanS (probable 9-O-acetyl-N-acetylneuraminate esterase) ,
paaA (ring 1,2-phenylacetyl-CoA epoxidase, monooxygenase subunit) ,
paaB (ring 1,2-phenylacetyl-CoA epoxidase subunit) ,
paaC (ring 1,2-phenylacetyl-CoA epoxidase, structural subunit) ,
paaD (phenylacetate degradation protein) ,
paaE (ring 1,2-phenylacetyl-CoA epoxidase, reductase subunit) ,
paaF (predicted 2,3-dehydroadipyl-CoA hydratase) ,
paaG (predicted ring 1,2-epoxyphenylacetyl-CoA isomerase (oxepin-CoA forming)) ,
paaH (3-hydroxyadipyl-CoA dehydrogenase (NAD+)) ,
paaJ (β-ketoadipyl-CoA thiolase) ,
paaK (phenylacetate-CoA ligase) ,
paaX ,
paaY (2-hydroxycyclohepta-1,4,6-triene-1-carboxyl-CoA thioesterase) ,
paaZ (oxepin-CoA hydrolase/3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase) ,
pfkA (6-phosphofructokinase-1 monomer) ,
pfkB (6-phosphofructokinase-2 monomer) ,
pgm (phosphoglucomutase) ,
poxB (pyruvate oxidase monomer) ,
proX (glycine betaine / proline ABC transporter - periplasmic binding protein) ,
prpB (2-methylisocitrate lyase) ,
prpC (2-methylcitrate synthase) ,
prpD (2-methylcitrate dehydratase) ,
pta ,
ptsA (fused predicted PTS enzyme : HPr component / enzyme I component / enzyme IIA component) ,
ptsG (glucose PTS permease - PtsG subunit) ,
ptsH (HPr - phosphorylated) ,
ptsI ,
rbsA (ribose ABC transporter - putative ATP binding subunit) ,
rbsB (ribose ABC transporter - putative periplasmic binding protein) ,
rbsC (ribose ABC transporter - membrane subunit) ,
rbsD (ribose pyranase) ,
rbsK (ribokinase) ,
rbsR (RbsR DNA-binding transcriptional dual regulator) ,
rhaA (L-rhamnose isomerase) ,
rhaB (L-rhamnulose kinase) ,
rhaD (rhamnulose-1-phosphate aldolase monomer) ,
rhaR (RhaR transcriptional activator) ,
rhaS ,
rhaT (rhamnose / lyxose:H+ symporter) ,
rpe (ribulose-5-phosphate 3-epimerase) ,
rpiA (ribose-5-phosphate isomerase A) ,
rpiB (allose-6-phosphate isomerase / ribose-5-phosphate isomerase B monomer) ,
rpiR (AlsR DNA-binding transcriptional repressor) ,
sad ,
setB (sugar / lactose efflux transporter SetB) ,
sfsA (predicted DNA-binding transcriptional regulator of maltose metabolism) ,
sfsB (Nlp transcriptional regulator) ,
sgbE (L-ribulose-5-phosphate 4-epimerase) ,
sgbU (predicted L-xylulose 5-phosphate 3-epimerase) ,
srlA (sorbitol PTS permease - SrlA subunit) ,
srlB (sorbitol PTS permease - SrlB subunit) ,
srlD ,
srlE (sorbitol PTS permease - SrlE subunit) ,
srlR (GutR DNA-binding transcriptional repressor) ,
tktA (transketolase I) ,
tktB (transketolase II) ,
treC (trehalose-6-phosphate hydrolase) ,
treF (cytoplasmic trehalase) ,
ucpA (predicted oxidoreductase) ,
uhpA (UhpA-Phosphorylated) ,
uhpB (UhpB sensory histidine kinase - phosphorylated) ,
uhpC (UhpC-glucose-6-P) ,
uhpT (hexose-6-phosphate:phosphate antiporter) ,
uidA (β-D-glucuronidase) ,
uidB (glucuronide:H+ symporter) ,
uidR (UidR DNA-binding transcriptional repressor) ,
ulaD (3-keto-L-gulonate 6-phosphate decarboxylase) ,
uxaA (D-altronate dehydratase) ,
uxaB (altronate oxidoreductase) ,
uxaC (D-glucuronate isomerase / D-galacturonate isomerase) ,
uxuA (D-mannonate dehydratase) ,
uxuB (D-mannonate oxidoreductase) ,
uxuR (UxuR DNA-binding transcriptional repressor) ,
xapB (xanthosine:H+ symporter XapB) ,
xylA ,
xylB (xylulokinase) ,
xylE (xylose:H+ symporter) ,
xylF (xylose ABC transporter - periplasmic binding protein) ,
xylG (xylose ABC transporter - ATP binding subunit) ,
xylH (xylose ABC transporter - membrane subunit) ,
xylR (XylR transcriptional activator) ,
yagF (CP4-6 prophage; D-xylonate dehydratase) ,
yagH (CP4-6 prophage; predicted xylosidase/arabinosidase) ,
ycjS (predicted oxidoreductase, NADH-binding) ,
ydeA (arabinose efflux transporter) ,
yiaK (2,3-diketo-L-gulonate reductase monomer) ,
yieL (predicted xylanase) ,
yihS (sulfoquinovose isomerase) ,
yihT (6-deoxy-6-sulfofructose-1-phosphate aldolase) ,
yihU (3-sulfolactaldehyde reductase) ,
yihV (6-deoxy-6-sulfofructose kinase) ,
yjhG (KpLE2 phage-like element; D-xylonate dehydratase) ,
zwf (glucose 6-phosphate-1-dehydrogenase)


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Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 18.5 on Sat Dec 20, 2014, BIOCYC13B.