Metabolic Modeling Tutorial
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Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
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Escherichia coli K-12 substr. MG1655 All-Genes Class: carbon compounds

Parent Classes:
carbon utilization

Instances:
aceE (subunit of E1p component of pyruvate dehydrogenase complex) ,
aceF (AceF-dihydrolipoate) ,
ackA (acetate kinase) ,
acnB (bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase) ,
acs (acetyl-CoA synthetase (AMP-forming)) ,
aes (acetyl esterase) ,
aldA ,
aldB ,
alsA (D-allose ABC transporter - ATP binding subunit) ,
alsB (D-allose ABC transporter - periplasmic binding protein) ,
alsC (D-allose ABC transporter - membrane subunit) ,
alsE (allulose-6-phosphate 3-epimerase) ,
alsK (D-allose kinase) ,
amyA (α-amylase) ,
araA (L-arabinose isomerase monomer) ,
araB (L-ribulokinase monomer) ,
araC ,
araD (L-ribulose 5-phosphate 4-epimerase monomer) ,
araE (arabinose:H+ symporter) ,
araF (arabinose ABC transporter - periplasmic binding protein) ,
araG (arabinose ABC transporter - ATP binding subunit) ,
araH (arabinose ABC transporter - membrane subunit) ,
araJ (putative transport protein) ,
ascB (6-phospho-β-glucosidase; cryptic) ,
ascF ,
ascG (AscG DNA-binding transcriptional repressor) ,
bglA (6-phospho-β-glucosidase A) ,
bglB (6-phospho-β-glucosidase B; cryptic) ,
bglF ,
bglG (BglG transcriptional antiterminator (monomer)) ,
bglJ (BglJ DNA-binding transcriptional regulator) ,
bglX (β-D-glucoside glucohydrolase, periplasmic) ,
caiT ,
chbA (chitobiose PTS permease - ChbA subunit) ,
chbB (chitobiose PTS permease - ChbB subunit) ,
chbC (chitobiose PTS permease - ChbC subunit) ,
chbF (monoacetylchitobiose-6-phosphate hydrolase) ,
chbR (ChbR DNA-binding transcriptional dual regulator) ,
citT (citrate:succinate antiporter) ,
cpsB (mannose-1-phosphate guanylyltransferase) ,
crr (Enzyme IIAGlc; Crr) ,
csrA (carbon storage regulator; pleiotropic regulatory protein for carbon source metabolism) ,
dctA (C4 dicarboxylate / orotate:H+ symporter) ,
dcuA (dicarboxylate transporter DcuA) ,
dcuB (dicarboxylate transporter DcuB) ,
dcuC (dicarboxylate transporter DcuC) ,
dgoA (2-oxo-3-deoxygalactonate 6-phosphate aldolase) ,
dgoD (D-galactonate dehydratase) ,
dgoK (2-dehydro-3-deoxygalactonate kinase) ,
dgoR (predicted DNA-binding transcriptional regulator) ,
dhaK (dihydroxyacetone kinase subunit K) ,
dhaL (dihydroxyacetone kinase subunit L) ,
dhaM (dihydroxyacetone kinase subunit M) ,
dkgA (methylglyoxal reductase [multifunctional]) ,
dkgB (methylglyoxal reductase [multifunctional]) ,
dmlA (D-malate / 3-isopropylmalate dehydrogenase (decarboxylating)) ,
ebgA (evolved β-D-galactosidase, α subunit; cryptic gene) ,
ebgC (evolved β-D-galactosidase, β subunit; cryptic gene) ,
ebgR (EbgR DNA-binding transcriptional repressor) ,
eda ,
exuR (ExuR DNA-binding transcriptional repressor) ,
exuT (hexuronate transporter) ,
fbaA (fructose bisphosphate aldolase monomer) ,
focA ,
frlB (fructoselysine 6-phosphate deglycase monomer) ,
frlC (fructoselysine 3-epimerase) ,
frlD (fructoselysine 6-kinase) ,
fruA (fructose PTS permease - FruA subunit) ,
fruB (FruB - his299 phosphorylated) ,
frvA (predicted PTS permease - FrvA subunit) ,
frwB (predicted PTS permease - FrwB subunit) ,
frwD (predicted PTS permease - FrwD subunit) ,
fryC (predicted PTS permease - FryC subunit) ,
fucA ,
fucI ,
fucK (L-fuculokinase) ,
fucO (L-1,2-propanediol oxidoreductase) ,
fucP (fucose:H+ symporter) ,
fucR (FucR transcriptional activator) ,
fucU (L-fucose mutarotase) ,
gabP (4-aminobutyrate:H+ symporter) ,
galE (UDP-glucose 4-epimerase monomer) ,
galK (galactokinase) ,
galM (galactose-1-epimerase) ,
galP (galactose:H+ symporter) ,
galR (GalR DNA-binding transcriptional dual regulator) ,
galS (GalS DNA-binding transcriptional dual regulator) ,
galT (galactose-1-phosphate uridylyltransferase) ,
galU (UTP--glucose-1-phosphate uridylyltransferase) ,
garD (galactarate dehydratase) ,
garK (glycerate kinase I) ,
garL ,
garP (galactarate / glucarate / glycerate transporter GarP) ,
garR (tartronate semialdehyde reductase) ,
gatA (galactitol PTS permease - GatA subunit) ,
gatB (galactitol PTS permease - GatB subunit) ,
gatC (galactitol PTS permease - GatC subunit) ,
gatD (galactitol-1-phosphate dehydrogenase) ,
gatY ,
gatZ ,
gcd (quinoprotein glucose dehydrogenase) ,
ghrB ,
glcA (glycolate / lactate:H+ symporter) ,
glcB (malate synthase G) ,
glcC (GlcC transcriptional dual regulator) ,
glgP ,
glgX (glycogen phosphorylase-limit dextrin α-1,6-glucohydrolase) ,
glk (glucokinase) ,
glvG (predicted phospho-glucosidase, truncated) ,
glxK (glycerate kinase II) ,
glxR (tartronate semialdehyde reductase 2) ,
gnd ,
gpmM (2,3-bisphosphoglycerate-independent phosphoglycerate mutase) ,
gudD (D-glucarate dehydratase) ,
gudP (galactarate / glucarate / glycerate transporter GudP) ,
gudX (glucarate dehydratase-related protein) ,
gutM (GutM DNA-binding transcriptional activator) ,
hcaB (2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase) ,
hcaC (3-phenylpropionate dioxygenase, predicted ferredoxin subunit) ,
hcaD (3-phenylpropionate dioxygenase, predicted ferredoxin reductase subunit) ,
hcaE (3-phenylpropionate dioxygenase, α subunit) ,
hcaF (3-phenylpropionate dioxygenase, β subunit) ,
hcaR (HcaR transcriptional dual regulator) ,
idnD (L-idonate 5-dehydrogenase) ,
idnK (D-gluconate kinase, thermosensitive) ,
idnO (5-keto-D-gluconate 5-reductase) ,
idnR (IdnR transcriptional regulator) ,
kbaY ,
kbaZ ,
kdgK (2-keto-3-deoxygluconokinase) ,
kdgT (2-dehydro-3-deoxy-D-gluconate:H+ symporter) ,
kduI (predicted 5-keto 4-deoxyuronate isomerase monomer) ,
kgtP (α-ketoglutarate:H+ symporter) ,
lacA (galactoside O-acetyltransferase monomer) ,
lacI (LacI DNA-binding transcriptional repressor) ,
lacY (lactose / melibiose:H+ symporter LacY) ,
lacZ (β-galactosidase monomer) ,
ldcC ,
lgoD (L-galactonate oxidoreductase) ,
lldP ((R)-lactate / (S)-lactate / glycolate:H+ symporter LldP) ,
lpd (E3 monomer) ,
lyxK (L-xylulose kinase) ,
mak (manno(fructo)kinase) ,
malF (maltose ABC transporter - membrane subunit) ,
malG (maltose ABC transporter - membrane subunit) ,
malI (MalI DNA-binding transcriptional repressor) ,
malK (maltose ABC transporter - ATP binding subunit) ,
malM (maltose regulon periplasmic protein) ,
malP (maltodextrin phosphorylase monomer) ,
malQ (amylomaltase) ,
malS (α-amylase) ,
malT (MalT transcriptional activator) ,
malX (MalX PTS permease) ,
malY (bifunctional β-cystathionase, PLP-dependent and regulator of maltose regulon) ,
malZ (maltodextrin glucosidase) ,
manA (mannose-6-phosphate isomerase) ,
manX (mannose PTS permease - ManX subunit) ,
manY (mannose PTS permease - ManY subunit) ,
manZ (mannose PTS permease - ManZ subunit) ,
mdh (malate dehydrogenase) ,
melA (α-galactosidase monomer) ,
melB (melibiose:H+/Na+/Li+ symporter) ,
melR (MelR DNA-binding transcriptional dual regulator) ,
mglA (galactose ABC transporter - ATP binding subunit) ,
mglB (galactose ABC transporter - periplasmic binding protein) ,
mglC (galactose ABC transporter - membrane subunit) ,
mhpA (3-(3-hydroxyphenyl)propionate 2-hydroxylase) ,
mhpC (2-hydroxy-6-ketonona-2,4-dienedioate hydrolase) ,
mhpD ,
mhpE (4-hydroxy-2-ketovalerate aldolase) ,
mhpF (acetaldehyde dehydrogenase 2) ,
mngA (2-O-α-mannosyl-D-glycerate PTS permease) ,
mngB (α-mannosidase) ,
mtlA ,
mtlD (mannitol-1-phosphate 5-dehydrogenase) ,
mtlR (MtlR DNA-binding transcriptional repressor) ,
murP (N-acetylmuramic acid PTS permease / anhydro-N-acetylmuramic acid permease) ,
nanM (N-acetylneuraminate mutarotase) ,
nanS (probable 9-O-acetyl-N-acetylneuraminate esterase) ,
paaA (ring 1,2-phenylacetyl-CoA epoxidase, monooxygenase subunit) ,
paaB (ring 1,2-phenylacetyl-CoA epoxidase subunit) ,
paaC (ring 1,2-phenylacetyl-CoA epoxidase, structural subunit) ,
paaD (phenylacetate degradation protein) ,
paaE (ring 1,2-phenylacetyl-CoA epoxidase, reductase subunit) ,
paaF (predicted 2,3-dehydroadipyl-CoA hydratase) ,
paaG (predicted ring 1,2-epoxyphenylacetyl-CoA isomerase (oxepin-CoA forming)) ,
paaH (3-hydroxyadipyl-CoA dehydrogenase (NAD+)) ,
paaJ (β-ketoadipyl-CoA thiolase) ,
paaK (phenylacetate-CoA ligase) ,
paaX ,
paaY (2-hydroxycyclohepta-1,4,6-triene-1-carboxyl-CoA thioesterase) ,
paaZ (oxepin-CoA hydrolase/3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase) ,
pfkA (6-phosphofructokinase-1 monomer) ,
pfkB (6-phosphofructokinase-2 monomer) ,
pgm (phosphoglucomutase) ,
poxB (pyruvate oxidase monomer) ,
proX (glycine betaine / proline ABC transporter - periplasmic binding protein) ,
prpB (2-methylisocitrate lyase) ,
prpC (2-methylcitrate synthase) ,
prpD (2-methylcitrate dehydratase) ,
pta ,
ptsA (fused predicted PTS enzyme : HPr component / enzyme I component / enzyme IIA component) ,
ptsG (glucose PTS permease - PtsG subunit) ,
ptsH (HPr - phosphorylated) ,
ptsI ,
rbsA (ribose ABC transporter - putative ATP binding subunit) ,
rbsB (ribose ABC transporter - putative periplasmic binding protein) ,
rbsC (ribose ABC transporter - membrane subunit) ,
rbsD (ribose pyranase) ,
rbsK (ribokinase) ,
rbsR (RbsR DNA-binding transcriptional dual regulator) ,
rhaA (L-rhamnose isomerase) ,
rhaB (L-rhamnulose kinase) ,
rhaD (rhamnulose-1-phosphate aldolase monomer) ,
rhaR (RhaR transcriptional activator) ,
rhaS ,
rhaT (rhamnose / lyxose:H+ symporter) ,
rpe (ribulose-5-phosphate 3-epimerase) ,
rpiA (ribose-5-phosphate isomerase A) ,
rpiB (allose-6-phosphate isomerase / ribose-5-phosphate isomerase B monomer) ,
rpiR (AlsR DNA-binding transcriptional repressor) ,
sad ,
setB (sugar / lactose efflux transporter SetB) ,
sfsA (predicted DNA-binding transcriptional regulator of maltose metabolism) ,
sfsB (Nlp transcriptional regulator) ,
sgbE (L-ribulose-5-phosphate 4-epimerase) ,
sgbU (predicted L-xylulose 5-phosphate 3-epimerase) ,
srlA (sorbitol PTS permease - SrlA subunit) ,
srlB (sorbitol PTS permease - SrlB subunit) ,
srlD ,
srlE (sorbitol PTS permease - SrlE subunit) ,
srlR (GutR DNA-binding transcriptional repressor) ,
tktA (transketolase I) ,
tktB (transketolase II) ,
treC (trehalose-6-phosphate hydrolase) ,
treF (cytoplasmic trehalase) ,
ucpA (predicted oxidoreductase) ,
uhpA (UhpA-Phosphorylated) ,
uhpB (UhpB sensory histidine kinase - phosphorylated) ,
uhpC (UhpC-glucose-6-P) ,
uhpT (hexose-6-phosphate:phosphate antiporter) ,
uidA (β-D-glucuronidase) ,
uidB (glucuronide:H+ symporter) ,
uidR (UidR DNA-binding transcriptional repressor) ,
ulaD (3-keto-L-gulonate 6-phosphate decarboxylase) ,
uxaA (D-altronate dehydratase) ,
uxaB (altronate oxidoreductase) ,
uxaC (D-glucuronate isomerase / D-galacturonate isomerase) ,
uxuA (D-mannonate dehydratase) ,
uxuB (D-mannonate oxidoreductase) ,
uxuR (UxuR DNA-binding transcriptional repressor) ,
xapB (xanthosine:H+ symporter XapB) ,
xylA ,
xylB (xylulokinase) ,
xylE (xylose:H+ symporter) ,
xylF (xylose ABC transporter - periplasmic binding protein) ,
xylG (xylose ABC transporter - ATP binding subunit) ,
xylH (xylose ABC transporter - membrane subunit) ,
xylR (XylR transcriptional activator) ,
yagF (CP4-6 prophage; D-xylonate dehydratase) ,
yagH (CP4-6 prophage; predicted xylosidase/arabinosidase) ,
ycjS (predicted oxidoreductase, NADH-binding) ,
ydeA (arabinose efflux transporter) ,
yiaK (2,3-diketo-L-gulonate reductase monomer) ,
yieL (predicted xylanase) ,
yihS (sulfoquinovose isomerase) ,
yihT (6-deoxy-6-sulfofructose-1-phosphate aldolase) ,
yihU (3-sulfolactaldehyde reductase) ,
yihV (6-deoxy-6-sulfofructose kinase) ,
yjhG (KpLE2 phage-like element; D-xylonate dehydratase) ,
zwf (glucose 6-phosphate-1-dehydrogenase)


Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 18.5 on Fri Nov 28, 2014, BIOCYC13B.