Metabolic Modeling Tutorial
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Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
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Escherichia coli K-12 substr. MG1655 All-Genes Class: anaerobic respiration

Parent Classes:
energy metabolism, carbon

Instances:
adhP (ethanol dehydrogenase / alcohol dehydrogenase) ,
dcuR ,
dcuS (DcuS sensory histidine kinase - phosphorylated) ,
dmsA (dimethyl sulfoxide reductase, chain A) ,
dmsB (dimethyl sulfoxide reductase, chain B) ,
dmsC (dimethyl sulfoxide reductase, chain C) ,
erpA (essential respiratory protein A) ,
fdhD (affects formate dehydrogenase-N) ,
fdhE (formate dehydrogenase formation protein) ,
fdnG (formate dehydrogenase N, α subunit) ,
fdnH (formate dehydrogenase N, β subunit) ,
fdnI (formate dehydrogenase N, γ subunit) ,
fdoG (formate dehydrogenase-O, α subunit) ,
fdoH (formate dehydrogenase-O, β subunit) ,
fdoI (formate dehydrogenase-O, γ subunit) ,
fnr ,
frdA (fumarate reductase flavoprotein) ,
frdB (fumarate reductase iron-sulfur protein) ,
frdC (fumarate reductase membrane protein) ,
frdD (fumarate reductase membrane protein) ,
glpA (anaerobic glycerol-3-phosphate dehydrogenase subunit A) ,
glpB (anaerobic glycerol-3-phosphate dehydrogenase subunit B) ,
glpC (anaerobic glycerol-3-phosphate dehydrogenase subunit C) ,
glpR (GlpR DNA-binding transcriptional repressor) ,
glpT (glycerol-3-phosphate:phosphate antiporter) ,
grcA (stress-induced alternate pyruvate formate-lyase subunit) ,
hyaA (hydrogenase 1, small subunit) ,
hyaB (hydrogenase 1, large subunit) ,
hyaC (hydrogenase 1, b-type cytochrome subunit) ,
hyaD (protein involved in processing of HyaA and HyaB proteins) ,
hyaE (protein involved in quality control of HyaA) ,
hyaF (protein involved in nickel incorporation into hydrogenase 1 proteins) ,
hybB (predicted hydrogenase 2 cytochrome b type component) ,
hybC (hydrogenase 2, large subunit) ,
hybD (predicted maturation peptidase for hydrogenase 2) ,
hybF (protein involved with the maturation of hydrogenases 1 and 2) ,
hybG (hydrogenase 2 accessory protein) ,
hybO (hydrogenase 2, small subunit) ,
hydN (putative electron transport protein HydN) ,
hyfA (hydrogenase 4, component A) ,
hyfB (hydrogenase 4, component B) ,
hyfC (hydrogenase 4, component C) ,
hyfD (hydrogenase 4, component D) ,
hyfE (hydrogenase 4, component E) ,
hyfF (hydrogenase 4, component F) ,
hyfG (hydrogenase 4, large subunit) ,
hyfH (hydrogenase 4, component H) ,
hyfI (hydrogenase 4, small subunit) ,
hyfR (HyfR DNA-binding transcriptional activator) ,
hypA (accessory protein for nickel incorporation into hydrogenase 3) ,
hypC (HypC, protein involved in hydrogenase 3 maturation) ,
hypD (HypD, scaffold protein for assembly of the Fe-(CN)2CO cofactor) ,
hypE (HypE-S-carboxamide) ,
hypF (hydrogenase maturation protein, carbamoyltransferase) ,
lldD (L-lactate dehydrogenase) ,
menA (1,4-dihydroxy-2-naphthoate octaprenyltransferase) ,
menB ,
menC (o-succinylbenzoate synthase) ,
menD ,
menE ,
menF ,
napA (large subunit of periplasmic nitrate reductase, molybdoprotein) ,
napB (subunit of periplasmic nitrate reductase, cytochrome c550 protein) ,
napC (periplasmic nitrate reductase, cytochrome c protein) ,
napF (ferredoxin-type protein) ,
napG (ferredoxin-type protein) ,
napH (ferredoxin-type protein) ,
narG (nitrate reductase A, α subunit) ,
narH (nitrate reductase A, β subunit) ,
narI (nitrate reductase A, γ subunit) ,
narJ (molybdenum cofactor assembly chaperone subunit (δ subunit) of nitrate reductase 1) ,
narL (NarL-Phosphorylated DNA-binding transcriptional dual regulator) ,
narP (NarP-Phosphorylated DNA-binding transcriptional dual regulator) ,
narQ (NarQ sensory histidine kinase - phosphorylated) ,
narV (nitrate reductase Z, γ subunit) ,
narW (NarW, probable private chaperone for NarZ nitrate reductase subunit) ,
narX (NarX sensory histidine kinase - phosphorylated) ,
narY (nitrate reductase Z, β subunit) ,
narZ (nitrate reductase Z, α subunit) ,
nikD (nickel ABC transporter - ATP binding subunit) ,
nikE (nickel ABC transporter - ATP binding subunit) ,
nirB (nitrite reductase, large subunit) ,
nirD (nitrite reductase, small subunit) ,
nrfA (formate dependent nitrite reductase - NrfA subunit) ,
nrfB (formate-dependent nitrite reductase - penta-heme cytochrome c) ,
nrfC (formate-dependent nitrite reductase, 4Fe-4S subunit) ,
nrfD (formate dependent nitrate reductase - NrfD subunit) ,
nrfE (formate-dependent nitrite reductase; possible assembly function) ,
nrfF (activator of formate-dependent nitrite reductase complex) ,
nrfG ,
nuoA (NADH:ubiquinone oxidoreductase, membrane subunit A) ,
nuoB (NADH:ubiquinone oxidoreductase, chain B) ,
nuoC (NADH:ubiquinone oxidoreductase, chain CD) ,
nuoE (NADH:ubiquinone oxidoreductase, chain E) ,
nuoF (NADH:ubiquinone oxidoreductase, chain F) ,
nuoG (NADH:ubiquinone oxidoreductase, chain G) ,
nuoH (NADH:ubiquinone oxidoreductase, membrane subunit H) ,
nuoI (NADH:ubiquinone oxidoreductase, chain I) ,
nuoJ (NADH:ubiquinone oxidoreductase, membrane subunit J) ,
nuoK (NADH:ubiquinone oxidoreductase, membrane subunit K) ,
nuoL (NADH:ubiquinone oxidoreductase, membrane subunit L) ,
nuoM (NADH:ubiquinone oxidoreductase, membrane subunit M) ,
nuoN (NADH:ubiquinone oxidoreductase, membrane subunit N) ,
pflA (pyruvate formate-lyase activating enzyme) ,
pflC (probable pyruvate formate lyase 2 activating enzyme) ,
pflD (formate acetyltransferase 2) ,
torA (trimethylamine N-oxide reductase, catalytic subunit) ,
torC (TorC trimethylamine N-oxide reductase, cytochrome c-type subunit) ,
torR ,
torS (TorS sensory histidine kinase - his850 phosphorylated) ,
torT (TorT-TMAO) ,
torY (trimethylamine N-oxide reductase III, c-type cytochrome subunit) ,
torZ (trimethylamine N-oxide reductase III, TorZ subunit) ,
ubiE (bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase and S-adenosylmethionine:2-DMK methyltransferase) ,
ugpA (glycerol-3-phosphate ABC transporter - membrane subunit) ,
ugpB (glycerol-3-phosphate ABC transporter - periplasmic binding protein) ,
ugpC (glycerol-3-phosphate ABC transporter - ATP binding subunit) ,
ugpE (glycerol-3-phosphate ABC transporter - membrane subunit) ,
ybiY (predicted pyruvate formate lyase activating enzyme) ,
yjjW (predicted pyruvate formate lyase activating enzyme)


Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 18.5 on Mon Nov 24, 2014, BIOCYC13B.