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Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
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Escherichia coli K-12 substr. MG1655 All-Genes Class: Transcription related

Parent Classes:
RNA related

Instances:
aaeR (quorum sensing transcriptional regulator of LYSR-type) ,
abgR (predicted DNA-binding transcriptional regulator, LYSR-type) ,
acrR (AcrR DNA-binding transcriptional repressor) ,
ada (Ada DNA-binding transcriptional dual regulator) ,
adiY (AdiY DNA-binding transcriptional activator) ,
agaR (AgaR DNA-binding transcriptional repressor) ,
allR (AllR DNA-binding transcriptional repressor) ,
allS (AllS transcriptional activator) ,
alpA (AlpA DNA-binding transcriptional activator; CP4-57 prophage) ,
appY (AppY DNA-binding transcriptional activator) ,
araC ,
arcA (ArcA-Phosphorylated DNA-binding transcriptional dual regulator) ,
argP (ArgP transcriptional activator) ,
argR ,
arsR ,
ascG (AscG DNA-binding transcriptional repressor) ,
asnC ,
atoC (AtoC-phosphorylated DNA-binding transcriptional activator) ,
baeR (BaeR-Phosphorylated DNA-binding transcriptional activator) ,
basR (BasR-Phosphorylated transcriptional regulator) ,
bdcR (predicted transcriptional regulator) ,
betI (BetI DNA-binding transcriptional repressor) ,
bglG (BglG transcriptional antiterminator (monomer)) ,
bglJ (BglJ DNA-binding transcriptional regulator) ,
birA (bifunctional biotin-[acetyl-CoA-carboxylase] ligase and transcriptional repressor) ,
bluR (BluR DNA-binding transcriptional repressor) ,
bolA (BolA DNA-binding transcriptional dual regulator) ,
cadC (CadC DNA-binding transcriptional activator) ,
caiF ,
cbl (Cbl DNA-binding transcriptional activator) ,
cdaR (CdaR DNA-binding transcriptional activator) ,
chbR (ChbR DNA-binding transcriptional dual regulator) ,
cpxP (regulator of the Cpx response and possible chaperone involved in resistance to extracytoplasmic stress) ,
cpxR (CpxR-Phosphorylated) ,
cra (Cra DNA-binding transcriptional dual regulator) ,
creB (CreB-Phosphorylated DNA-binding transcriptional regulator) ,
crl (RNA polymerase holoenzyme assembly factor Crl) ,
crp (CRP transcriptional dual regulator) ,
csgD (CsgD DNA-binding transcriptional dual regulator) ,
csiR (CsiR DNA-binding transcriptional repressor) ,
cspA (CspA DNA-binding transcriptional activator) ,
cspC (stress protein, member of the CspA family) ,
cueR (CueR transcriptional dual regulator) ,
cusR (CusR-Pasp DNA binding transcriptional activator) ,
cynR (CynR DNA-binding transcriptional repressor) ,
cysB ,
cytR ,
dcuR ,
deoR (DeoR DNA-binding transcriptional repressor) ,
dgoR (predicted DNA-binding transcriptional regulator) ,
dhaR (DhaR DNA-binding transcriptional dual regulator) ,
dicA (DicA DNA-binding transcriptional dual regulator) ,
dmlR (DmlR DNA-binding transcriptional regulator) ,
dnaA (chromosomal replication initiator protein DnaA; DNA-binding transcriptional dual regulator) ,
dpiA (DpiA-Pasp DNA-binding transcriptional dual regulator) ,
dsdC (DsdC DNA-binding transcriptional dual regulator) ,
ebgR (EbgR DNA-binding transcriptional repressor) ,
envR (EnvR DNA-binding transcriptional repressor) ,
envY (EnvY DNA-binding transcriptional activator) ,
eutR (putative ARAC-type regulatory protein) ,
evgA (EvgA-Phosphorylated DNA-binding transcriptional activator) ,
exuR (ExuR DNA-binding transcriptional repressor) ,
fabR (FabR DNA-binding transcriptional repressor) ,
fadR (FadR DNA-binding transcriptional dual regulator) ,
feaR (FeaR DNA-binding transcriptional activator) ,
fecI (RNA polymerase, sigma 19 factor) ,
fecR (regulator for fec operon, periplasmic) ,
fhlA (FhlA transcriptional activator) ,
fimZ (FimZ transcriptional regulator) ,
fis ,
flgM (anti-sigma factor for FliA (σ28)) ,
flhC ,
flhD ,
fliA (RNA polymerase, sigma 28 (sigma F) factor) ,
fnr ,
frlR (predicted DNA-binding transcriptional regulator) ,
frvR (FrvR predicted transcriptional regulator) ,
ftsH (ATP-dependent zinc metalloprotease FtsH) ,
fucR (FucR transcriptional activator) ,
fur ,
gadE (GadE DNA-binding transcriptional activator) ,
gadW (GadW DNA-binding transcriptional dual regulator) ,
gadX (GadX DNA-binding transcriptional dual regulator) ,
galR (GalR DNA-binding transcriptional dual regulator) ,
galS (GalS DNA-binding transcriptional dual regulator) ,
gatR_1 (negative DNA-binding transcriptional regulator of galactitol metabolism) ,
gatR_2 ,
gcvA (GcvA DNA-binding transcriptional dual regulator) ,
gcvR (GcvR predicted transcriptional regulator) ,
glcC (GlcC transcriptional dual regulator) ,
glnB (uridylyl-[protein PII]) ,
glnG (NtrC-phosphorylated monomer) ,
glpR (GlpR DNA-binding transcriptional repressor) ,
glrR (GlrR-Pasp56 DNA binding transcriptional activator) ,
gmr (cyclic di-GMP phosphodiesterase) ,
gntR (GntR DNA-binding transcriptional repressor) ,
greA (transcription elongation factor GreA) ,
greB (transcription elongation factor GreB) ,
gutM (GutM DNA-binding transcriptional activator) ,
gyrA (DNA gyrase, subunit A) ,
gyrB (DNA gyrase, subunit B) ,
hcaR (HcaR transcriptional dual regulator) ,
hdfR (HdfR DNA-binding transcriptional dual regulator) ,
hepA (RNA Polymerase (RNAP)-binding ATPase and RNAP recycling factor) ,
hha (haemolysin expression modulating protein) ,
hipB ,
hns (H-NS DNA-binding transcriptional dual regulator) ,
hscC (Hsc62, Hsp70 family chaperone, binds to RpoD and inhibits transcription) ,
hupA (transcriptional dual regulator HU-α (HU-2)) ,
hupB (transcriptional dual regulator HU-β, NS1 (HU-1)) ,
hycA (regulator of the transcriptional regulator FhlA) ,
hyfR (HyfR DNA-binding transcriptional activator) ,
hypT (HypT transcriptional dual regulator) ,
iclR (IclR transcriptional repressor) ,
idnR (IdnR transcriptional regulator) ,
ihfA (integration host factor (IHF), α subunit) ,
ihfB (integration host factor (IHF), β subunit) ,
ilvY (IlvY DNA-binding transcriptional dual regulator) ,
iscR (IscR DNA-binding transcriptional dual regulator) ,
kdgR (KdgR DNA-binding transcriptional repressor) ,
kdpE (KdpE-Phosphorylated) ,
lacI (LacI DNA-binding transcriptional repressor) ,
leuO (LeuO DNA-binding transcriptional dual regulator) ,
lexA ,
lldR (LldR transcriptional repressor) ,
lrhA (LrhA DNA-binding transcriptional dual regulator) ,
lrp (Lrp transcriptional dual regulator) ,
lsrR ,
lysR (LysR DNA-binding transcriptional dual regulator) ,
malI (MalI DNA-binding transcriptional repressor) ,
malT (MalT transcriptional activator) ,
marA (MarA DNA-binding transcriptional dual regulator) ,
marR (MarR transcriptional repressor) ,
mcbR (McbR DNA-binding transcriptional dual regulator) ,
melR (MelR DNA-binding transcriptional dual regulator) ,
metJ (MetJ transcriptional repressor) ,
metR ,
mfd (transcription-repair coupling factor) ,
mhpR (MhpR transcriptional activator) ,
mlc (Mlc DNA-binding transcriptional repressor) ,
mlrA (MlrA DNA binding transcriptional activator) ,
mngR ,
mntR ,
modE ,
mprA ,
mtlR (MtlR DNA-binding transcriptional repressor) ,
murR ,
nac (Nac DNA-binding transcriptional dual regulator) ,
nadR (NadR DNA-binding transcriptional repressor and NMN adenylyltransferase) ,
nagC (NagC DNA-binding transcriptional dual regulator) ,
nanR (NanR DNA-binding transcriptional dual regulator) ,
narL (NarL-Phosphorylated DNA-binding transcriptional dual regulator) ,
narP (NarP-Phosphorylated DNA-binding transcriptional dual regulator) ,
nhaR (NhaR transcriptional activator) ,
nikR (NikR DNA-binding transcriptional repressor, Ni-binding) ,
norR (NorR DNA-binding transcriptional dual regulator) ,
nsrR ,
nusA (transcription termination/antitermination L factor) ,
nusB (transcription antitermination protein NusB) ,
nusG (transcription termination factor NusG) ,
ompR (OmpR-Phosphorylated) ,
osmE (osmotically inducible protein OsmE) ,
oxyR (OxyR DNA-binding transcriptional dual regulator) ,
paaX ,
pdhR (PdhR DNA-binding transcriptional dual regulator) ,
pepA (aminopeptidase A/I) ,
pgrR (PgrR DNA-binding transcriptional repressor) ,
phnF (PhnF predicted transcriptional regulator) ,
phoB (PhoB-Phosphorylated DNA-binding transcriptional dual regulator) ,
phoP (PhoP-Phosphorylated DNA-binding transcriptional dual regulator) ,
prpR (PrpR DNA-binding transcriptional dual regulator) ,
pspA (regulatory protein for the phage shock protein operon) ,
pspB (stimulates PspC-mediated transcriptional activation of the psp operon; antitoxin of a PspC-PspB toxin-antitoxin pair) ,
pspC (PspC transcriptional regulator; toxin of a PspC-PspB toxin-antitoxin pair) ,
pspF (PspF transcriptional dual regulator) ,
purR ,
putA (fused PutA transcriptional repressor / proline dehydrogenase / 1-pyrroline-5-carboxylate dehydrogenase) ,
qseB (QseB-Phosphorylated DNA-binding transcriptional activator) ,
rbsR (RbsR DNA-binding transcriptional dual regulator) ,
rclR (RclR DNA-binding transcriptional activator) ,
rcsA (positive DNA-binding transcriptional regulator of capsular polysaccharide synthesis, activates its own expression) ,
rcsB (RcsB-Pasp56) ,
relB (RelB Qin prophage; antitoxin of the RelE-RelB toxin-antitoxin system and DNA binding transcriptional repressor) ,
rfaH (RfaH transcriptional antiterminator) ,
rhaR (RhaR transcriptional activator) ,
rhaS ,
rho (transcription termination factor Rho monomer; polarity suppressor) ,
rhoL (rho operon leader peptide) ,
rob (Rob DNA-binding transcriptional activator) ,
rof (modulator of Rho-dependent transcription termination) ,
rpiR (AlsR DNA-binding transcriptional repressor) ,
rpoA (RNA polymerase, α subunit) ,
rpoB (RNA polymerase, β subunit) ,
rpoC (RNA polymerase, β' subunit) ,
rpoD (RNA polymerase, sigma 70 (sigma D) factor) ,
rpoE (RNA polymerase, sigma 24 (sigma E) factor) ,
rpoH (RNA polymerase, sigma 32 (sigma H) factor) ,
rpoN (RNA polymerase, sigma 54 (sigma N) factor) ,
rpoZ (RNA polymerase, ω subunit) ,
rsd (regulator of σ70D), stationary phase protein) ,
rseA (anti-sigma factor) ,
rseB ,
rseC (SoxR and σE factor regulatory protein RseC) ,
rstA (RstA-Phosphorylated DNA-binding transcriptional regulator) ,
rtcR (RtcR DNA-binding transcriptional activator) ,
rutR (RutR DNA-binding transcriptional dual regulator) ,
sdiA (SdiA DNA-binding transcriptional dual regulator) ,
sfsB (Nlp transcriptional regulator) ,
sgcR (KpLE2 phage-like element; predicted DNA-binding transcriptional regulator) ,
slyA (SlyA DNA-binding transcriptional activator) ,
soxR (SoxR DNA-binding transcriptional dual regulator) ,
soxS (SoxS DNA-binding transcriptional dual regulator) ,
srlR (GutR DNA-binding transcriptional repressor) ,
sspA (stringent starvation protein A) ,
tdcA (TdcA DNA-binding transcriptional activator) ,
tdcR (TdcR DNA-binding transcriptional activator) ,
topA (DNA topoisomerase I) ,
topB (DNA topoisomerase III) ,
torR ,
treR (TreR transcriptional repressor) ,
trpR ,
ttdR (Dan) ,
tyrR (TyrR DNA-binding transcriptional dual regulator) ,
uhpA (UhpA-Phosphorylated) ,
uidR (UidR DNA-binding transcriptional repressor) ,
ulaR (UlaR DNA-binding transcriptional repressor) ,
umuD (SOS mutagenesis; error-prone repair; processed to UmuD'; forms complex with UmuC) ,
uvrY (UvrY- Phosphorylated transcriptional regulator) ,
uxuR (UxuR DNA-binding transcriptional repressor) ,
xapR (XapR transcriptional activator) ,
xylR (XylR transcriptional activator) ,
yafC (predicted DNA-binding transcriptional regulator LYSR-type) ,
yagI (CP4-6 prophage; predicted DNA-binding transcriptional regulator) ,
yahB (predicted DNA-binding transcriptional regulator, LysR-type) ,
yahD (predicted transcriptional regulator with ankyrin domain) ,
yaiV (predicted DNA-binding transcriptional regulator) ,
yaiW (surface exposed outer membrane lipoprotein) ,
ybaO (predicted DNA-binding transcriptional regulator) ,
ybaQ (predicted DNA-binding transcriptional regulator) ,
ybdO (predicted DNA-binding transcriptional regulator LYSR-type) ,
ybeF (predicted DNA-binding transcriptional regulator, LYSR-type) ,
ybhD (predicted DNA-binding transcriptional regulator) ,
ybiH (predicted DNA-binding transcriptional regulator) ,
ycaN (putative transcriptional regulator LYSR-type) ,
yciT (DNA-binding transcriptional regulator) ,
ycjW (predicted DNA-binding transcriptional regulator, LacI type) ,
ydaM (diguanylate cyclase) ,
ydcI (YdcI DNA-binding transcriptional repressor) ,
ydcR (fused predicted DNA-binding transcriptional regulator and predicted amino transferase) ,
ydeO (YdeO DNA-binding transcriptional dual regulator) ,
ydfH (YdfH DNA-binding transcriptional repressor) ,
ydhB (protein with similarity to transcriptional regulators) ,
ydiP (predicted DNA-binding transcriptional regulator) ,
ydjF (predicted DNA-binding transcriptional regulator) ,
yeaM (predicted DNA-binding transcriptional regulator) ,
yebK (predicted DNA-binding transcriptional regulator) ,
yedW (predicted DNA-binding response regulator in two-component system with YedV) ,
yeeY (predicted DNA-binding transcriptional regulator) ,
yegW (predicted DNA-binding transcriptional regulator) ,
yeiE (LYSR-type transcriptional regulator) ,
yeiL (YeiL DNA-binding transcriptional activator) ,
yfaX (predicted DNA-binding transcriptional regulator) ,
yfeR (predicted DNA-binding transcriptional regulator, LYSR-type) ,
yfhH (predicted DNA-binding transcriptional regulator) ,
yfiE (predicted DNA-binding transcriptional regulator LYSR-type) ,
ygbI (predicted DNA-binding transcriptional regulator, DEOR-type) ,
ygeK (predicted DNA-binding transcriptional regulator) ,
ygeV (putative transcriptional regulator) ,
ygfI (predicted DNA-binding transcriptional regulator LYSR-type) ,
yghO (predicted DNA-binding transcriptional regulator) ,
ygiV (YgiV DNA-binding transcriptional repressor) ,
yhaJ (predicted DNA-binding transcriptional regulator LYSR-type) ,
yhcF (predicted transcriptional regulator) ,
yhjB (predicted DNA-binding response regulator in two-component regulatory system) ,
yhjC (predicted DNA-binding transcriptional regulator) ,
yiaJ (YiaJ DNA-binding transcriptional repressor) ,
yiaU (predicted DNA-binding transcriptional regulator, LysR-type) ,
yidF (predicted DNA-binding transcriptional regulator) ,
yidL (putative ARAC-type regulatory protein) ,
yidP (predicted DNA-binding transcriptional regulator) ,
yidZ (putative transcriptional regulator LysR-type) ,
yihL (YihL putative transcriptional regulator) ,
yihW (predicted DNA-binding transcriptional regulator) ,
yiiE (predicted transcriptional regulator) ,
yijO (predicted DNA-binding transcriptional regulator) ,
yjdC (predicted transcriptional regulator) ,
yjhI (KpLE2 phage-like element; predicted DNA-binding transcriptional regulator) ,
yjiR (putative regulator) ,
ykgA (predicted DNA-binding transcriptional regulator) ,
yneJ (predicted DNA-binding transcriptional regulator, LysR-type) ,
ypdB (YpdB-phosphorylated DNA binding transcriptional activator) ,
ypdC (predicted ARAC-type regulatory protein) ,
yqgF (predicted transcription antitermination factor) ,
yqhC (YqhC DNA-binding transcriptional activator) ,
yqjI (YqjI DNA-binding transcriptional repressor) ,
ytfA (predicted transcriptional regulator) ,
zntR (ZntR transcriptional activator) ,
zraR (ZraR-Phosphorylated DNA-binding transcriptional activator) ,
zur


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Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 18.5 on Sat Dec 20, 2014, biocyc13.