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Metabolic Modeling Tutorial
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Escherichia coli K-12 substr. MG1655 All-Genes Class: RNA modification

Parent Classes:
RNA related

Instances:
cca (fused tRNA nucleotidyltransferase / 2',3'-cyclic phosphodiesterase / 2' nucleotidase and phosphatase) ,
cmoA (carboxy-S-adenosyl-L-methionine synthase) ,
cmoB (tRNA U34 carboxymethyltransferase) ,
dusA (tRNA-dihydrouridine synthase A) ,
dusB (tRNA-dihydrouridine synthase B) ,
dusC (tRNA-dihydrouridine synthase C) ,
gluQ (glutamyl-Q tRNAAsp synthetase) ,
hrpA (ATP-dependent helicase) ,
iscS (cysteine desulfurase monomer) ,
ligT (2'-5' RNA ligase) ,
miaA (tRNA(i6A37) synthase) ,
miaB (isopentenyl-adenosine A37 tRNA methylthiolase) ,
mnmA (tRNA-specific 2-thiouridylase) ,
mnmC (fused 5-methylaminomethyl-2-thiouridine-forming methyltransferase and FAD-dependent demodification enzyme) ,
mnmE (GTPase, involved in modification of U34 in tRNA) ,
mnmG (protein involved in modification of U34 in tRNA) ,
pcnB (poly(A) polymerase I) ,
queA (S-adenosylmethionine:tRNA ribosyltransferase-isomerase) ,
queC (7-cyano-7-deazaguanine synthase) ,
queD (6-carboxy-5,6,7,8-tetrahydropterin synthase) ,
queF (7-cyano-7-deazaguanine reductase) ,
queG (epoxyqueuosine reductase) ,
rbn ,
rlmA (23S rRNA m1G745 methyltransferase) ,
rlmB (23S rRNA 2'-O-ribose G2251 methyltransferase monomer) ,
rlmC (23S rRNA m5U747 methyltransferase) ,
rlmD (23S rRNA m5U1939 methyltransferase) ,
rlmE (23S rRNA 2'-O-ribose U2552 methyltransferase) ,
rlmF (23S rRNA m6A1618 methyltransferase) ,
rlmG (23S rRNA m2G1835 methyltransferase) ,
rlmH (23S rRNA m3Ψ1915 methyltransferase) ,
rlmI (23S rRNA m5C1962 methyltransferase monomer) ,
rlmJ (23S rRNA m6A2030 methyltransferase) ,
rlmL (fused 23S rRNA m2G2445 methyltransferase and 23S rRNA m7G2069 methyltransferase) ,
rlmM (23S rRNA 2'-O-ribose C2498 methyltransferase) ,
rlmN (23S rRNA m2A2503 methyltransferase and tRNA m2A37 methyltransferase) ,
rluA (23S rRNA and tRNA pseudouridine synthase) ,
rluB (23S rRNA pseudouridine 2605 synthase) ,
rluC (23S rRNA pseudouridine synthase) ,
rluD (23S rRNA pseudouridine synthase) ,
rluE (23S rRNA pseudouridine 2457 synthase) ,
rluF (23S rRNA pseudouridine 2604 synthase) ,
rnd (RNase D) ,
rng (ribonuclease G (RNAse G) monomer) ,
rnpA (RNase P protein component; processes tRNA, 4.5S RNA) ,
rnpB (RnpB RNA; catalytic subunit of RNAse P) ,
rsmA (16S rRNA m62A1518,m62A1519 dimethyltransferase) ,
rsmB (16S rRNA m5C967 methyltransferase) ,
rsmC (16S rRNA m2G1207 methyltransferase) ,
rsmD (16S rRNA m2G966 methyltransferase) ,
rsmE (16S rRNA m3U1498 methyltransferase monomer) ,
rsmF (16S rRNA m5C1407 methyltransferase) ,
rsmG (16S rRNA m7G527 methyltransferase) ,
rsmH (16S rRNA m4C1402 methyltransferase) ,
rsmI (16S rRNA 2'-O-ribose C1402 methyltransferase) ,
rsmJ (16S rRNA m2G1516 methyltransferase) ,
rsuA (16S rRNA pseudouridine 516 synthase) ,
rtcA (RNA 3'-terminal phosphate cyclase) ,
selD (selenide, water dikinase) ,
tadA (tRNA-specific adenosine deaminase monomer) ,
tcdA (tRNA threonylcarbamoyladenosine dehydratase) ,
tgt (tRNA-guanine transglycosylase monomer) ,
thiI ,
tilS (tRNAIle-lysidine synthetase) ,
tmcA (tRNAMet cytidine acetyltransferase) ,
trmA (tRNA m5U54 methyltransferase) ,
trmD (tRNA m1G37 methyltransferase) ,
trmH (tRNA (Gm18) 2'-O-methyltransferase) ,
trmI (tRNA m7G46 methyltransferase) ,
trmJ (tRNA Cm32/Um32 methyltransferase) ,
trmL (tRNA (cytidine/uridine-2'-O)-ribose methyltransferase) ,
trmO (tRNA m6t6A37 methyltransferase) ,
truA (tRNA pseudouridine synthase I) ,
truB (tRNA pseudouridine 55 synthase) ,
truC (tRNA pseudouridine 65 synthase) ,
truD (tRNA pseudouridine 13 synthase) ,
tsaC (protein involved in synthesis of threonylcarbamoyladenosine-modified tRNA) ,
ttcA (tRNA C32 thiolase) ,
tusA (sulfur transfer protein) ,
tusB (sulfur transfer protein complex, TusB subunit) ,
tusC (sulfur transfer protein complex, TusC subunit) ,
tusD (sulfur transfer protein complex, TusD subunit) ,
tusE (sulfur transfer protein) ,
ybbB (tRNA 2-selenouridine synthase) ,
yfiC (tRNA m6A37 methyltransferase)


Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 18.5 on Mon Nov 24, 2014, biocyc13.