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Escherichia coli K-12 substr. MG1655 All-Genes Class: adaptations

Summary:
The adaptation to stress was meant to cover the classical stress inducers such as osmotic pressure, temperature, starvation. The protection category was meant to cover those related to compound / chemical induced killing or stress. The defense/survival category was meant to cover virulence factors (although K-12 does not have many).

Parent Classes:
cell processes

Child Classes:
dessication (7) ,
Fe aquisition (30) ,
osmotic pressure (29) ,
other (mechanical, nutritional, oxidative stress) (64) ,
pH (32) ,
starvation (27) ,
temperature extremes (26)

Instances:
acrZ (small membrane protein that interacts with the AcrAB-TolC multidrug efflux pump) ,
bhsA (outer membrane protein involved in copper permeability, stress resistance and biofilm formation) ,
blr (β-lactam resistance protein) ,
cspC (stress protein, member of the CspA family) ,
cusF (copper / silver efflux system - periplasmic binding protein and metallochaperone) ,
dosC (diguanylate cyclase) ,
dosP (c-di-GMP phosphodiesterase, heme-regulated) ,
dsbA (protein disulfide oxidoreductase - DsbAoxidised) ,
gmr (cyclic di-GMP phosphodiesterase) ,
hepA (RNA Polymerase (RNAP)-binding ATPase and RNAP recycling factor) ,
hicB (antitoxin of the HicA-HicB toxin-antitoxin system) ,
iraP (anti-adaptor protein for σS stabilization) ,
micF (MicF small regulatory RNA) ,
tabA (toxin-antitoxin biofilm protein) ,
tsaD (protein involved in threonylcarbamoyladenosine biosynthesis) ,
uspA (universal stress global stress response regulator) ,
uspB (predicted universal stress (ethanol tolerance) protein B) ,
uspC (universal stress protein) ,
uspD (stress protein involved in resistance to UV irradiation) ,
uspE (universal stress protein with a role cellular motility) ,
uspG (universal stress protein UP12) ,
ybaB (conserved DNA-binding protein) ,
ybaM (small protein involved in the cell envelope stress response) ,
ybjN (predicted oxidoreductase) ,
yfgF (cyclic di-GMP phosphodiesterase) ,
ykgM (predicted ribosomal protein) ,
yqcG (small protein involved in the cell envelope stress response) ,
zinT (cadmium-induced cadmium binding protein)


Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 18.5 on Wed Nov 26, 2014, biocyc13.