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Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
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for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
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for maintenance.
Metabolic Modeling Tutorial
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Escherichia coli K-12 substr. MG1655 Gene-Ontology-Terms Class: GO:0003676 - nucleic acid binding

Definition: Interacting selectively and non-covalently with any nucleic acid.

Parent Classes:
GO:1901363 - heterocyclic compound binding ,
GO:0097159 - organic cyclic compound binding

Child Classes:
GO:0000496 - base pairing (102) ,
GO:0001067 - regulatory region nucleic acid binding (42) ,
GO:0003677 - DNA binding (549) ,
GO:0003723 - RNA binding (273) ,
GO:0071667 - DNA/RNA hybrid binding (4) ,
GO:0090079 - translation regulator activity, nucleic acid binding (6) ,
GO:0097617 - annealing activity (4)

Term Members:
predicted transcriptional accessory protein (yhgF) ,
predicted protein (ychG_2) ,
predicted protein, N-terminal fragment (ychG_1) ,
endonuclease VIII (nei) ,
protein involved in CRISPR R-loop formation and dissociation (cas3) ,
Qin prophage; cold shock protein; predicted DNA-binding transcriptional regulator (cspB) ,
transcription-repair coupling factor (mfd) ,
restriction of DNA at 5-methylcytosine residues (mcrA) ,
ATP-dependent RNA helicase, specific for 23S rRNA (dbpA) ,
SrmB, DEAD-box RNA helicase ,
ATP-dependent DNA helicase (recQ) ,
transposase of IS30 (insI-1) ,
transcription termination factor Rho monomer; polarity suppressor ,
stress protein, member of the CspA family (cspC) ,
CspA DNA-binding transcriptional activator ,
transcription antiterminator and regulator of RNA stability (cspE) ,
DNA replication inhibitor (cspD) ,
formamidopyrimidine DNA glycosylase (mutM) ,
DNA polymerase I, 5' --> 3' polymerase, 5' --> 3' and 3' --> 5' exonuclease (polA) ,
protein involved in cytokinesis (yceG) ,
KpLE2 phage-like element; partial transposase (insO-2) ,
conserved protein (yoaA) ,
e14 prophage; predicted integrase ,
fused 23S rRNA m2G2445 methyltransferase and 23S rRNA m7G2069 methyltransferase (rlmL) ,
CP4-57 prophage; conserved protein; mutations lead to radiation resistance (yfjK) ,
conserved protein (yraN) ,
ATP-dependent helicase (hrpA) ,
23S rRNA m2G1835 methyltransferase (rlmG) ,
16S rRNA m2G1207 methyltransferase (rsmC) ,
protein-glutamine N-methyltransferase (prmB) ,
23S rRNA m6A2030 methyltransferase (rlmJ) ,
predicted ATP-dependent helicase (hrpB) ,
CP4-6 prophage; predicted DNA-binding transcriptional regulator (yagA) ,
tRNA m6A37 methyltransferase (yfiC) ,
ribonuclease II (rnb) ,
member of ATP-dependent helicase superfamily II (lhr) ,
Rnt ,
DNA adenine methyltransferase (yhdJ) ,
ATP-dependent helicase (dinG) ,
ATP-dependent RNA helicase (rhlE) ,
RecG DNA helicase ,
methylated adenine and cytosine restriction protein (mrr) ,
RecJ ,
aspartyl-tRNA synthetase (aspS) ,
RNase R (rnr) ,
DNA polymerase II (polB) ,
IS150 conserved protein InsB (insK) ,
primosome factor N' (priA) ,
DNA polymerase III, α subunit (dnaE) ,
RNAse HII, degrades RNA of DNA-RNA hybrids (rnhB) ,
predicted IS186/IS421 transposase (insL-3) ,
IS186/IS421 transposase (insL-2) ,
IS186/IS421 transposase (insL-1) ,
KpLE2 phage-like element; IS30 transposase (insI-3) ,
transposase of IS30 (insI-2) ,
IS3 element protein InsF (insF-1) ,
Qin prophage; predicted transposase (insD) ,
IS2 element protein (insD-1) ,
exonuclease X (exoX) ,
DNA adenine methyltransferase (dam) ,
16S rRNA m2G966 methyltransferase (rsmD) ,
protein-(glutamine-N5) methyltransferase (prmC) ,
conserved protein (yajD) ,
DeaD, DEAD-box RNA helicase ,
Qin prophage; cold shock protein (cspI) ,
stress protein, member of the CspA family (cspH) ,
cold shock protein CspG ,
Qin prophage; cold shock protein (cspF) ,
lysyl-tRNA synthetase (lysU) ,
lysyl tRNA synthetase (LysRSs), constitutive (lysS) ,
asparaginyl-tRNA synthetase (asnS) ,
RhlB ,
predicted transcription antitermination factor (yqgF) ,
Holliday junction nuclease; resolution of structures; repair (ruvC) ,
30S ribosomal subunit protein S13 (rpsM) ,
oligoribonuclease monomer (orn) ,
RNase D (rnd) ,
host modification; DNA methylase M (hsdM) ,
exonuclease I, 3' --> 5' specific; deoxyribophosphodiesterase (sbcB) ,
exonuclease VII, large subunit (xseA) ,
IS1 predicted transposase (insG) ,
DNA polymerase III, ε subunit (dnaQ) ,
alanyl-tRNA synthetase (alaS) ,
RNase HI, degrades RNA of DNA-RNA hybrids, participates in DNA replication (rnhA) ,
predicted structural protein, ethanolamine utilization microcompartment (eutK) ,
RNA Polymerase (RNAP)-binding ATPase and RNAP recycling factor (hepA)

Unification Links: GO:0003676


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Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 18.5 on Sun Dec 21, 2014, biocyc14.