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Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
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Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
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Metabolic Modeling Tutorial
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Escherichia coli K-12 substr. MG1655 Gene-Ontology-Terms Class: GO:0003677 - DNA binding

Definition: Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).

Parent Classes:
GO:0003676 - nucleic acid binding

Child Classes:
GO:0000975 - regulatory region DNA binding (42) ,
GO:0003684 - damaged DNA binding (9) ,
GO:0008301 - DNA binding, bending (3) ,
GO:0010844 - recombination hotspot binding (1) ,
GO:0043565 - sequence-specific DNA binding (115) ,
GO:0043566 - structure-specific DNA binding (30)

Term Members:
Cascade subunit B (casB) ,
multifunctional nuclease (cas1) ,
CPS-53 (KpLE1) prophage; prophage CPS-53 integrase (intS) ,
MraZ DNA-binding transcriptional repressor ,
RecC ,
RecD ,
DNA adenine methyltransferase (dam) ,
serine/threonine kinase HipA ,
recombination factor (rarA) ,
REP-associated tyrosine transposase (rayT) ,
DinJ antitoxin of YafQ-DinJ toxin-antitoxin system and DNA-binding transcriptional repressor ,
MqsA antitoxin of the MqsRA toxin-antitoxin system and DNA-binding transcriptional repressor ,
YefM antitoxin of the YoeB-YefM toxin-antitoxin pair and DNA binding transcriptional repressor ,
BaeR transcriptional regulator ,
FliZ DNA-binding transcriptional regulator ,
CsgD DNA-binding transcriptional dual regulator ,
endonuclease VIII (nei) ,
protein involved in CRISPR R-loop formation and dissociation (cas3) ,
LrhA DNA-binding transcriptional dual regulator ,
CbpA monomer ,
NadR DNA-binding transcriptional repressor and NMN adenylyltransferase ,
AscG DNA-binding transcriptional repressor ,
MutS ,
HipB ,
KdpE transcriptional activator ,
ChbR DNA-binding transcriptional dual regulator ,
transposase of IS30 (insI-1) ,
ssDNA-binding protein (ssb) ,
EvgA transcriptional regulator ,
AcrR DNA-binding transcriptional repressor ,
AllS transcriptional activator ,
TdcA DNA-binding transcriptional activator ,
OxyR DNA-binding transcriptional dual regulator ,
RbsR DNA-binding transcriptional dual regulator ,
CytR ,
LldR transcriptional repressor ,
GlpR DNA-binding transcriptional repressor ,
DeoR DNA-binding transcriptional repressor ,
Lrp transcriptional dual regulator ,
H-NS DNA-binding transcriptional dual regulator (hns) ,
SoxS DNA-binding transcriptional dual regulator ,
transcription antiterminator and regulator of RNA stability (cspE) ,
DNA replication inhibitor (cspD) ,
ArgP transcriptional activator ,
macrodomain Ter protein (matP) ,
NrdR ,
DNA strand exchange and recombination protein with protease and nuclease activity (recA) ,
RNA-binding protein that affects many cellular processes; homolog of mammalian Sm/Sm-like proteins (hfq) ,
ArgR ,
RhaR transcriptional activator ,
PriB ,
formamidopyrimidine DNA glycosylase (mutM) ,
predicted DNA topoisomerase (yrdD) ,
DNA topoisomerase III (topB) ,
DNA topoisomerase I (topA) ,
predicted protein (ygeL) ,
predicted protein (yncM) ,
topoisomerase IV subunit B (parE) ,
IS150 protein InsA (insJ) ,
YpdB-phosphorylated DNA binding transcriptional activator ,
conserved protein with bipartite regulator domain (yqeH) ,
conserved protein (yciV) ,
DLP12 prophage; predicted recombinase (ybcK) ,
predicted DNA-binding transcriptional regulator (ylbG) ,
CP4-6 prophage; DNA-binding protein (yagL) ,
CPZ-55 prophage; predicted protein (yffS) ,
CPZ-55 prophage; predicted protein (yffO) ,
CPZ-55 prophage; predicted integrase (intZ) ,
CPS-53 (KpLE1) prophage; predicted methyltransferase (yfdM) ,
conserved protein (yegI) ,
conserved protein (ydiL) ,
Qin prophage; predicted defective integrase (intQ) ,
Rac prophage; predicted DNA-binding transcriptional regulator (ydaS) ,
Rac prophage; predicted integrase (intR) ,
e14 prophage; predicted DNA-binding transcriptional regulator (ymfT) ,
e14 prophage; predicted integrase ,
zinc-binding phosphatase (ycdX) ,
predicted transposase; receptor protein (ybfL) ,
DLP12 prophage; predicted exonuclease (ybcC) ,
CP4-6 prophage; predicted phage integrase (intF) ,
IS1 protein InsB (insB-4) ,
conserved protein (yifN) ,
conserved protein (yifO) ,
KpLE2 phage-like element; predicted integrase (intB) ,
predicted transcriptional regulator (ytfA) ,
flap endonuclease (ygdG) ,
CP4-6 prophage; predicted DNA-binding transcriptional regulator (yagA) ,
predicted ATP-dependent helicase (yejH) ,
CP4-57 prophage; integrase (intA) ,
conserved protein (ydcC) ,
putative DNA ligase (ybfD) ,
predicted transposase (yhhI) ,
DNA polymerase III, χ subunit (holC) ,
DNA adenine methyltransferase (yhdJ) ,
DNA polymerase III, δ subunit (holA) ,
DLP12 prophage; predicted integrase (intD) ,
methylated adenine and cytosine restriction protein (mrr) ,
adenine glycosylase; G.C --> T.A transversions (mutY) ,
DNA ligase ,
DNA polymerase III, α subunit (dnaE) ,
predicted IS186/IS421 transposase (insL-3) ,
IS186/IS421 transposase (insL-1) ,
IS2 element protein InsA (insC-1) ,
IS1 protein InsB (insB-2) ,
IS1 protein InsB (insB-1) ,
CP4-6 prophage; IS5 transposase and trans-activator (insH-1) ,
SOS mutagenesis; error-prone repair; processed to UmuD'; forms complex with UmuC ,
regulator of nucleoside diphosphate kinase (rnk) ,
transcription termination/antitermination L factor (nusA) ,
DNA-cytosine methyltransferase (dcm) ,
regulator for fimA (fimE) ,
regulator for fimA (fimB) ,
DNA polymerase III, θ subunit (holE) ,
DNA primase (dnaG) ,
endonuclease III; specific for apurinic and/or apyrimidinic sites (nth) ,
heat shock protein, hemimethylated DNA-binding protein (hspQ) ,
DnaN ,
RNA polymerase, β subunit (rpoB) ,
RNA polymerase, β' subunit (rpoC) ,
excinuclease ABC, subunit C; repair of UV damage to DNA (uvrC) ,
DNA repair; excision nuclease subunit B (uvrB) ,
conserved protein (yeeN) ,
conserved protein (yebC) ,
branch migration of Holliday structures; repair helicase (ruvB) ,
RNA polymerase, ω subunit (rpoZ) ,
RNA polymerase, α subunit (rpoA) ,
recombination and repair (recR) ,
endonuclease IV (nfo) ,
exonuclease III (xthA) ,
host modification; DNA methylase M (hsdM) ,
RecB ,
DNA polymerase III, τ subunit (dnaX) ,
DNA polymerase III, ε subunit (dnaQ) ,
cyanase monomer (cynS) ,
HcaR transcriptional dual regulator ,
FeaR DNA-binding transcriptional activator ,
Nac DNA-binding transcriptional dual regulator ,
Cascade subunit A (casA) ,
AtoC transcriptional activator; Az protein inhibitor of ODC ,
PrpR DNA-binding transcriptional dual regulator ,
MurR ,
KdgR DNA-binding transcriptional repressor ,
McbR DNA-binding transcriptional dual regulator ,
BluR DNA-binding transcriptional repressor ,
NemR DNA-binding transcriptional repressor ,
YqjI DNA-binding transcriptional repressor ,
Dan (ttdR) ,
BglJ DNA-binding transcriptional regulator ,
RtcR DNA-binding transcriptional activator ,
TreR transcriptional repressor ,
AdiY DNA-binding transcriptional activator ,
transmembrane component of cytoskeleton (rodZ) ,
XapR transcriptional activator ,
MutL ,
MngR ,
IS186/IS421 transposase (insL-2) ,
KpLE2 phage-like element; IS30 transposase (insI-3) ,
transposase of IS30 (insI-2) ,
IS3 element protein InsF (insF-1) ,
IS3 element protein InsE (insE-5) ,
IS3 element protein InsE (insE-4) ,
DLP12 prophage; IS3 element protein InsE (insE-3) ,
IS3 element protein InsE (insE-2) ,
IS3 element protein InsE (insE-1) ,
IS2 element protein (insD-1) ,
KpLE2 phage-like element; IS2 insertion element repressor InsA (insC-6) ,
IS2 insertion element repressor InsA (insC-5) ,
IS2 insertion element repressor InsA (insC-4) ,
CP4-44 prophage; IS2 insertion element repressor InsA (insC-3) ,
IS2 insertion element repressor InsA (insC-2) ,
IS5 transposase and trans-activator (insH-11) ,
IS5 transposase and trans-activator (insH-10) ,
IS5 transposase and trans-activator (insH-9) ,
IS5 transposase and trans-activator (insH-8) ,
IS5 transposase and trans-activator (insH-7) ,
IS5 transposase and trans-activator (insH-4) ,
IS5 transposase and trans-activator (insH-3) ,
DLP12 prophage; IS5 transposase and trans-activator (insH-2) ,
GlrR DNA-binding transcriptional activator ,
CpxR transcriptional dual regulator ,
FabR DNA-binding transcriptional repressor ,
RutR DNA-binding transcriptional dual regulator ,
EnvR DNA-binding transcriptional repressor ,
ZntR transcriptional activator ,
AllR DNA-binding transcriptional repressor ,
PdhR DNA-binding transcriptional dual regulator ,
AsnC ,
periplasmic protein associated with repression of competance (ybaV) ,
ArcA transcriptional dual regulator ,
MntR ,
HdfR DNA-binding transcriptional dual regulator ,
MutH ,
AppY DNA-binding transcriptional activator ,
IHF DNA-binding transcriptional dual regulator ,
protein used in recombination and DNA repair (recN) ,
conserved protein (yncE) ,
conserved protein with endonuclease activity (smrA) ,
CRISPR-associated complex for antiviral defense ,
antitoxin of the YafO-YafN toxin-antitoxin system ,
toxin of the YafQ-DinJ toxin-antitoxin system ,
PrlF antitoxin ,
Qin prophage; predicted transposase (insD) ,
RelB Qin prophage; antitoxin of the RelE-RelB toxin-antitoxin system and DNA binding transcriptional repressor ,
predicted DNA-binding transcriptional regulator (yghO) ,
predicted DNA-binding transcriptional regulator (lgoR) ,
YgiV DNA-binding transcriptional repressor ,
TreR DNA-binding transcriptional repressor ,
predicted transposase (ydcM) ,
protein involved in utilization of DNA as a carbon source (hofQ) ,
SodA ,
aminopeptidase A/I (pepA) ,
GTPase involved in chromosome partitioning and ribosome assembly (obgE) ,
acetyl-CoA carboxyltransferase, β subunit (accD) ,
acetyl-CoA carboxyltransferase ,
ATP-binding protein with possible role in replication (uup) ,
DpiA-Pasp DNA-binding transcriptional dual regulator ,
conserved DNA-binding protein (ybaB) ,
RcnR DNA-binding transcriptional repressor ,
regulator protein (frmR) ,
phosphodiesterase, c-di-GMP-specific (yahA) ,
predicted DNA-binding transcriptional regulator (yjjQ) ,
DNA gyrase, subunit B (gyrB) ,
protein that modulates Hha toxicity (tomB) ,
AidB ,
PerR transcriptional regulator ,
KpLE2 phage-like element; partial transposase (insO-2) ,
DLP12 prophage; predicted antitermination protein (ybcQ) ,
DNA polymerase IV (Y-family DNA polymerase; translesion DNA synthesis) (dinB) ,
Cbl DNA-binding transcriptional activator ,
predicted transcriptional regulator (yqeI) ,
YqhC DNA-binding transcriptional activator ,
putative transcriptional regulator (ygeV) ,
predicted DNA-binding transcriptional regulator (ygeK) ,
prophage excisionase and response regulator inhibitor (torI) ,
predicted DNA-binding transcriptional regulator LYSR-type (ybdO) ,
predicted DNA-binding transcriptional regulator, LYSR-type (abgR) ,
predicted DNA-binding transcriptional regulator (yfaX) ,
fused predicted DNA-binding transcriptional regulator and predicted amino transferase (ydcR) ,
predicted DNA-binding transcriptional regulator (ydjF) ,
predicted DNA-binding transcriptional regulator, LysR-type (yahB) ,
DLP12 prophage; predicted DNA-binding transcriptional regulator (ybcM) ,
predicted DNA-binding transcriptional regulator (ydcN) ,
predicted DNA-binding transcriptional regulator, LacI type (ycjW) ,
predicted DNA-binding transcriptional regulator (ykgA) ,
MhpR transcriptional activator ,
predicted DNA-binding transcriptional regulator (ynfL) ,
predicted DNA-binding transcriptional regulator (ydiP) ,
predicted ARAC-type regulatory protein (ypdC) ,
RclR DNA-binding transcriptional activator ,
PgrR DNA-binding transcriptional repressor ,
predicted DNA-binding transcriptional regulator, LysR-type (yneJ) ,
CP4-6 prophage; predicted DNA-binding transcriptional regulator (yagI) ,
predicted DNA-binding transcriptional regulator (ygaV) ,
YdcI DNA-binding transcriptional repressor ,
Qin prophage; predicted site-specific recombinase (pinQ) ,
predicted transcriptional regulator (ygeH) ,
predicted invertase fragment (pinH) ,
predicted DNA-binding transcriptional regulator (yeeY) ,
predicted DNA-binding response regulator in two-component system with YedV (yedW) ,
conserved protein (yoaA) ,
DmlR DNA-binding transcriptional regulator ,
predicted DNA-binding transcriptional regulator (yeaM) ,
Qin prophage; predicted antitermination protein Q (ydfT) ,
LsrR ,
predicted transcriptional regulator (yneL) ,
YdeO DNA-binding transcriptional dual regulator ,
predicted protein (yncI) ,
PaaX ,
Rac prophage; IS5 transposase and trans-activator (insH-5) ,
Rac prophage; predicted DNA-binding transcriptional regulator (racR) ,
DNA-binding transcriptional regulator (yciT) ,
DhaR DNA-binding transcriptional dual regulator ,
e14 prophage; predicted repressor protein (ymfK) ,
e14 prophage; predicted excisionase (xisE) ,
ComR DNA-binding transcriptional repressor ,
putative transcriptional regulator LYSR-type (ycaN) ,
RcdA DNA-binding transcriptional regulator ,
CP4-6 prophage; partial regulator of insertion element IS911A (insN-1) ,
MatA DNA-binding transcriptional dual regulator (ecpR) ,
HyfR DNA-binding transcriptional activator ,
antitoxin of the HigB-HigA toxin-antitoxin system ,
predicted DNA-binding transcriptional regulator (yddM) ,
antitoxin of the HicA-HicB toxin-antitoxin system ,
quorum sensing transcriptional regulator of LYSR-type (aaeR) ,
predicted DNA-binding transcriptional regulator LYSR-type (yhaJ) ,
H-NS- and StpA-binding protein (cnu) ,
GadE DNA-binding transcriptional activator ,
GadW DNA-binding transcriptional dual regulator ,
RNA Polymerase (RNAP)-binding ATPase and RNAP recycling factor (hepA) ,
predicted DNA-binding transcriptional regulator (ybhD) ,
predicted DNA-binding transcriptional regulator, DEOR-type (ygbI) ,
CP4-57 prophage; predicted DNA-binding transcriptional regulator (yfjR) ,
RstA transcriptional regulator ,
QseB transcriptional activator ,
predicted DNA-binding transcriptional regulator LYSR-type (ygfI) ,
Mlc DNA-binding transcriptional repressor ,
essential cell division protein FtsK ,
predicted DNA-binding transcriptional regulator (yebK) ,
DsdC DNA-binding transcriptional dual regulator ,
predicted DNA-binding transcriptional regulator (frlR) ,
putative regulator (yjiR) ,
HypT transcriptional dual regulator ,
KpLE2 phage-like element; predicted DNA-binding transcriptional regulator (sgcR) ,
KpLE2 phage-like element; predicted DNA-binding transcriptional regulator (yjhI) ,
KpLE2 phage-like element; predicted DNA-binding transcriptional regulator (yjhU) ,
IdnR transcriptional regulator ,
predicted transcriptional regulator (bdcR) ,
KpLE2 phage-like element; partial regulator of insertion element IS911B (interrupted) (insN-2) ,
UxuR DNA-binding transcriptional repressor ,
TorR ,
predicted DNA-binding transcriptional regulator (yfhH) ,
predicted DNA-binding transcriptional regulator, LysR-type (yiaU) ,
YiaJ DNA-binding transcriptional repressor ,
predicted DNA-binding transcriptional regulator (yhjC) ,
predicted DNA-binding response regulator in two-component regulatory system (yhjB) ,
GadX DNA-binding transcriptional dual regulator ,
PspF transcriptional dual regulator ,
CsiR DNA-binding transcriptional repressor ,
ArsR ,
predicted DNA-binding transcriptional regulator (dctR) ,
NorR DNA-binding transcriptional dual regulator ,
Qin prophage; cold shock protein; predicted DNA-binding transcriptional regulator (cspB) ,
negative DNA-binding transcriptional regulator of galactitol metabolism (gatR_1) ,
GatR_2 ,
putative ARAC-type regulatory protein (eutR) ,
AlpA DNA-binding transcriptional activator; CP4-57 prophage ,
ChpB toxin of the ChpB-ChpS toxin-antitoxin system ,
predicted DNA-binding transcriptional regulator LYSR-type (yfiE) ,
SgrR DNA-binding transcriptional dual regulator ,
MlrA DNA binding transcriptional activator ,
recombinase, DNA renaturation (recT) ,
predicted DNA-binding transcriptional regulator (yijO) ,
FrvR predicted transcriptional regulator ,
predicted DNA-binding transcriptional regulator (yihW) ,
NarP ,
predicted transcriptional regulator (yieP) ,
putative transcriptional regulator LysR-type (yidZ) ,
predicted DNA-binding transcriptional regulator (dgoR) ,
predicted DNA-binding transcriptional regulator (yidP) ,
putative ARAC-type regulatory protein (yidL) ,
predicted DNA-binding transcriptional regulator, LYSR-type (ybeF) ,
transcription-repair coupling factor (mfd) ,
predicted DNA-binding transcriptional regulator LYSR-type (yafC) ,
BasR transcriptional regulator ,
transcription elongation factor GreB ,
DNA polymerase III, δ prime subunit (holB) ,
ATP-dependent helicase (dinG) ,
MarR transcriptional repressor ,
CynR DNA-binding transcriptional repressor ,
GalS DNA-binding transcriptional dual regulator ,
DNA recombination protein (radA) ,
RNA polymerase, sigma 54 (sigma N) factor (rpoN) ,
RecG DNA helicase ,
CadC DNA-binding transcriptional activator ,
PhoP ,
RNA polymerase, sigma 19 factor (fecI) ,
cell division protein involved in chromosome partitioning (mukB) ,
DNA polymerase II (polB) ,
IS150 conserved protein InsB (insK) ,
FhlA transcriptional activator ,
MalI DNA-binding transcriptional repressor ,
primosome factor N' (priA) ,
BetI DNA-binding transcriptional repressor ,
PhnF predicted transcriptional regulator ,
IclR transcriptional repressor ,
DNA-binding protein; inhibition of replication at Ter sites (tus) ,
GutR DNA-binding transcriptional repressor (srlR) ,
GutM DNA-binding transcriptional activator ,
ATP-dependent DNA helicase (recQ) ,
DNA helicase IV (helD) ,
MrcB subunit of 5-methylcytosine restriction system (mcrB) ,
ZraR transcriptional activator ,
RNA polymerase, sigma S (sigma 38) factor (rpoS) ,
TdcR DNA-binding transcriptional activator ,
EnvY DNA-binding transcriptional activator ,
LeuO DNA-binding transcriptional dual regulator ,
cell division inhibitor, nucleoid occlusion (slmA) ,
IscR DNA-binding transcriptional dual regulator ,
RNA polymerase, sigma 24 (sigma E) factor (rpoE) ,
RNA polymerase, sigma 32 (sigma H) factor (rpoH) ,
UhpA transcriptional activator ,
SeqA, negative modulator of initiation of replication ,
RfaH transcriptional antiterminator ,
YehT ,
PhoB transcriptional dual regulator ,
topoisomerase IV subunit A (parC) ,
NtrC transcriptional dual regulator (glnG) ,
NsrR ,
NarL ,
NagC DNA-binding transcriptional dual regulator ,
MtlR DNA-binding transcriptional repressor ,
DNA gyrase, subunit A ,
RNA polymerase, sigma 28 (sigma F) factor (fliA) ,
FimZ transcriptional regulator ,
DpiA ,
UvrY transcriptional regulator ,
MazE antitoxin of the MazF-MazE toxin-antitoxin system ,
MazF toxin of the MazF-MazE toxin-antitoxin system that exhibits ribonuclease activity ,
cell division modulator (cedA) ,
YpdB transcriptional regulator ,
Rac prophage; predicted site-specific recombinase (pinR) ,
DcuR transcriptional activator ,
CusR ,
predicted transcriptional regulator (yjdC) ,
predicted DNA-binding transcriptional regulator (ybiH) ,
UidR DNA-binding transcriptional repressor ,
AlsR DNA-binding transcriptional repressor (rpiR) ,
SoxR DNA-binding transcriptional dual regulator ,
MprA ,
predicted DNA-binding transcriptional regulator, LYSR-type (yfeR) ,
LYSR-type transcriptional regulator (yeiE) ,
protein with similarity to transcriptional regulators (ydhB) ,
PurR ,
GntR DNA-binding transcriptional repressor ,
Cra DNA-binding transcriptional dual regulator ,
predicted transcriptional regulator (ytfH) ,
YihL putative transcriptional regulator ,
predicted DNA-binding transcriptional regulator (yegW) ,
YdfH DNA-binding transcriptional repressor ,
GlcC transcriptional dual regulator ,
ExuR DNA-binding transcriptional repressor ,
FucR transcriptional activator ,
AgaR DNA-binding transcriptional repressor ,
CRP transcriptional dual regulator ,
predicted DNA-binding transcriptional regulator (ybaO) ,
XylR transcriptional activator ,
Rob DNA-binding transcriptional activator ,
MelR DNA-binding transcriptional dual regulator ,
MarA DNA-binding transcriptional dual regulator ,
Nlp transcriptional regulator (sfsB) ,
heat shock protein Hsp15 involved in ribosome recycling (hslR) ,
H-NS-like DNA-binding protein with RNA chaperone activity (stpA) ,
transcriptional dual regulator HU-β, NS1 (HU-1) (hupB) ,
transcriptional dual regulator HU-α (HU-2) (hupA) ,
haemolysin expression modulating protein (hha) ,
DnaB ,
Zur ,
FlhC ,
stationary phase nucleoid protein that sequesters iron and protects DNA from damage (dps) ,
BolA DNA-binding transcriptional dual regulator ,
OmpR ,
stress protein, member of the CspA family (cspC) ,
CspA DNA-binding transcriptional activator ,
UlaR DNA-binding transcriptional repressor ,
predicted transcriptional regulator (yiaG) ,
PuuR DNA-binding transcriptional repressor ,
predicted DNA-binding transcriptional regulator (ybaQ) ,
Lon ,
stationary phase mismatch/uracil DNA glycosylase (mug) ,
ModE ,
CueR transcriptional dual regulator ,
NhaR transcriptional activator ,
MetR ,
GcvA DNA-binding transcriptional dual regulator ,
CysB ,
YeiL DNA-binding transcriptional activator ,
FNR ,
AraC ,
Fur ,
Qin prophage; cold shock protein (cspI) ,
stress protein, member of the CspA family (cspH) ,
cold shock protein CspG ,
Qin prophage; cold shock protein (cspF) ,
SlyA DNA-binding transcriptional activator ,
NanR DNA-binding transcriptional dual regulator ,
FadR DNA-binding transcriptional dual regulator ,
MetJ transcriptional repressor ,
FlhD ,
site-specific recombinase (xerD) ,
site-specific tyrosine recombinase (xerC) ,
TrpR ,
predicted DNA-binding transcriptional regulator of maltose metabolism (sfsA) ,
branch migration of Holliday structures; repair (ruvA) ,
ssDNA and dsDNA binding, ATP binding (recF) ,
LexA ,
NikR DNA-binding transcriptional repressor, Ni-binding ,
integration host factor (IHF), β subunit (ihfB) ,
integration host factor (IHF), α subunit (ihfA) ,
transcription elongation factor GreA ,
Fis ,
excision nuclease subunit A (uvrA) ,
rep ,
fused PutA transcriptional repressor / proline dehydrogenase / 1-pyrroline-5-carboxylate dehydrogenase ,
RhaS ,
DNA mismatch endonuclease of the very short patch (VSP) mismatch repair pathway (vsr) ,
host restriction; endonuclease R (hsdR) ,
CreB transcriptional regulator ,
ChpS antitoxin of the ChpB-ChpS toxin-antitoxin system ,
TyrR DNA-binding transcriptional dual regulator ,
SdiA DNA-binding transcriptional dual regulator ,
MalT transcriptional activator ,
DicA DNA-binding transcriptional dual regulator ,
Qin prophage; DNA-binding transcriptional regulator for DicB (dicC) ,
EbgR DNA-binding transcriptional repressor ,
bifunctional biotin-[acetyl-CoA-carboxylase] ligase and transcriptional repressor (birA) ,
Ada DNA-binding transcriptional dual regulator ,
IlvY DNA-binding transcriptional dual regulator ,
specificity determinant for hsdM and hsdR (hsdS) ,
CP4-44 prophage; IS5 transposase and trans-activator (insH-6) ,
IS1 predicted transposase (insG) ,
LysR DNA-binding transcriptional dual regulator ,
GalR DNA-binding transcriptional dual regulator ,
LacI DNA-binding transcriptional repressor ,
UvrD ,
e14 prophage; site-specific DNA recombinase (pinE) ,
chromosomal replication initiator protein DnaA; DNA-binding transcriptional dual regulator ,
deoxyribodipyrimidine photolyase (photoreactivation) (phr) ,
DNA polymerase I, 5' --> 3' polymerase, 5' --> 3' and 3' --> 5' exonuclease (polA) ,
RNA polymerase, sigma 70 (sigma D) factor (rpoD) ,
regulator of acid resistance, influenced by indole (ariR) ,
primosomal replication protein N'' (priC)

Unification Links: GO:0003677


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Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 18.5 on Sat Dec 20, 2014, biocyc14.