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Metabolic Modeling Tutorial
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BioCyc websites down
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Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
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Metabolic Modeling Tutorial
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Escherichia coli K-12 substr. MG1655 Gene-Ontology-Terms Class: GO:0003700 - sequence-specific DNA binding transcription factor activity

Synonyms: GO:0000130

Definition: Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.

Parent Classes:
GO:0001071 - nucleic acid binding transcription factor activity

Child Classes:
GO:0001073 - DNA binding transcription antitermination factor activity (2) ,
GO:0001130 - sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity (9)

Term Members:
MraZ DNA-binding transcriptional repressor ,
KpLE2 phage-like element; predicted DNA-binding transcriptional regulator (yjhU) ,
OxyR DNA-binding transcriptional dual regulator ,
fused PutA transcriptional repressor / proline dehydrogenase / 1-pyrroline-5-carboxylate dehydrogenase ,
predicted protein (ygeL) ,
BetI DNA-binding transcriptional repressor ,
NsrR ,
NikR DNA-binding transcriptional repressor, Ni-binding ,
PerR transcriptional regulator ,
Cbl DNA-binding transcriptional activator ,
conserved protein with bipartite regulator domain (yqeH) ,
YqhC DNA-binding transcriptional activator ,
predicted DNA-binding transcriptional regulator (ygeK) ,
predicted DNA-binding transcriptional regulator LYSR-type (ybdO) ,
fused predicted DNA-binding transcriptional regulator and predicted amino transferase (ydcR) ,
predicted DNA-binding transcriptional regulator (ydjF) ,
predicted DNA-binding transcriptional regulator, LysR-type (yahB) ,
DLP12 prophage; predicted DNA-binding transcriptional regulator (ybcM) ,
predicted DNA-binding transcriptional regulator, LacI type (ycjW) ,
predicted DNA-binding transcriptional regulator (ykgA) ,
predicted DNA-binding transcriptional regulator (ynfL) ,
predicted DNA-binding transcriptional regulator (ydiP) ,
predicted ARAC-type regulatory protein (ypdC) ,
RclR DNA-binding transcriptional activator ,
PgrR DNA-binding transcriptional repressor ,
predicted DNA-binding transcriptional regulator, LysR-type (yneJ) ,
predicted DNA-binding transcriptional regulator (ygaV) ,
YdcI DNA-binding transcriptional repressor ,
predicted DNA-binding transcriptional regulator (yeeY) ,
predicted DNA-binding transcriptional regulator (yeaM) ,
predicted transcriptional regulator (yneL) ,
YdeO DNA-binding transcriptional dual regulator ,
DNA-binding transcriptional regulator (yciT) ,
putative transcriptional regulator LYSR-type (ycaN) ,
MatA DNA-binding transcriptional dual regulator (ecpR) ,
quorum sensing transcriptional regulator of LYSR-type (aaeR) ,
predicted DNA-binding transcriptional regulator LYSR-type (yhaJ) ,
GadE DNA-binding transcriptional activator ,
predicted DNA-binding transcriptional regulator (ybhD) ,
predicted DNA-binding transcriptional regulator, DEOR-type (ygbI) ,
CP4-57 prophage; predicted DNA-binding transcriptional regulator (yfjR) ,
CsgD DNA-binding transcriptional dual regulator ,
predicted DNA-binding transcriptional regulator LYSR-type (ygfI) ,
predicted DNA-binding transcriptional regulator (yebK) ,
DsdC DNA-binding transcriptional dual regulator ,
predicted DNA-binding transcriptional regulator (frlR) ,
predicted DNA-binding transcriptional regulator (lgoR) ,
putative regulator (yjiR) ,
HypT transcriptional dual regulator ,
KpLE2 phage-like element; predicted DNA-binding transcriptional regulator (sgcR) ,
IdnR transcriptional regulator ,
UxuR DNA-binding transcriptional repressor ,
predicted DNA-binding transcriptional regulator (yfhH) ,
predicted DNA-binding transcriptional regulator, LysR-type (yiaU) ,
predicted DNA-binding transcriptional regulator (yhjC) ,
predicted DNA-binding response regulator in two-component regulatory system (yhjB) ,
GadX DNA-binding transcriptional dual regulator ,
CsiR DNA-binding transcriptional repressor ,
ArsR ,
predicted DNA-binding transcriptional regulator (dctR) ,
NorR DNA-binding transcriptional dual regulator ,
negative DNA-binding transcriptional regulator of galactitol metabolism (gatR_1) ,
GatR_2 ,
LrhA DNA-binding transcriptional dual regulator ,
putative ARAC-type regulatory protein (eutR) ,
predicted DNA-binding transcriptional regulator LYSR-type (yfiE) ,
predicted DNA-binding transcriptional regulator (yijO) ,
predicted DNA-binding transcriptional regulator (yihW) ,
NarP ,
predicted transcriptional regulator (yieP) ,
putative transcriptional regulator LysR-type (yidZ) ,
predicted DNA-binding transcriptional regulator (dgoR) ,
predicted DNA-binding transcriptional regulator (yidP) ,
putative ARAC-type regulatory protein (yidL) ,
predicted DNA-binding transcriptional regulator, LYSR-type (ybeF) ,
predicted DNA-binding transcriptional regulator LYSR-type (yafC) ,
MarR transcriptional repressor ,
CynR DNA-binding transcriptional repressor ,
GalS DNA-binding transcriptional dual regulator ,
RNA polymerase, sigma 54 (sigma N) factor (rpoN) ,
RNA polymerase, sigma 19 factor (fecI) ,
phosphodiesterase, c-di-GMP-specific (yahA) ,
MalI DNA-binding transcriptional repressor ,
ChbR DNA-binding transcriptional dual regulator ,
GutR DNA-binding transcriptional repressor (srlR) ,
EnvY DNA-binding transcriptional activator ,
LeuO DNA-binding transcriptional dual regulator ,
IscR DNA-binding transcriptional dual regulator ,
RNA polymerase, sigma 24 (sigma E) factor (rpoE) ,
RNA polymerase, sigma 32 (sigma H) factor (rpoH) ,
UhpA transcriptional activator ,
transcription termination/antitermination L factor (nusA) ,
NarL ,
NagC DNA-binding transcriptional dual regulator ,
RNA polymerase, sigma 28 (sigma F) factor (fliA) ,
FimZ transcriptional regulator ,
UvrY transcriptional regulator ,
predicted DNA-binding transcriptional regulator (yjjQ) ,
EvgA transcriptional regulator ,
AlsR DNA-binding transcriptional repressor (rpiR) ,
MprA ,
predicted DNA-binding transcriptional regulator, LYSR-type (yfeR) ,
LYSR-type transcriptional regulator (yeiE) ,
protein with similarity to transcriptional regulators (ydhB) ,
TdcA DNA-binding transcriptional activator ,
RbsR DNA-binding transcriptional dual regulator ,
PurR ,
GntR DNA-binding transcriptional repressor ,
Cra DNA-binding transcriptional dual regulator ,
CytR ,
YihL putative transcriptional regulator ,
predicted DNA-binding transcriptional regulator (yegW) ,
YdfH DNA-binding transcriptional repressor ,
LldR transcriptional repressor ,
GlcC transcriptional dual regulator ,
ExuR DNA-binding transcriptional repressor ,
GlpR DNA-binding transcriptional repressor ,
FucR transcriptional activator ,
DeoR DNA-binding transcriptional repressor ,
AgaR DNA-binding transcriptional repressor ,
CRP transcriptional dual regulator ,
predicted DNA-binding transcriptional regulator (ybaO) ,
Lrp transcriptional dual regulator ,
Rob DNA-binding transcriptional activator ,
MelR DNA-binding transcriptional dual regulator ,
MarA DNA-binding transcriptional dual regulator ,
Zur ,
UlaR DNA-binding transcriptional repressor ,
ModE ,
CueR transcriptional dual regulator ,
NhaR transcriptional activator ,
MetR ,
GcvA DNA-binding transcriptional dual regulator ,
CysB ,
SoxS DNA-binding transcriptional dual regulator ,
AraC ,
Fur ,
NanR DNA-binding transcriptional dual regulator ,
MetJ transcriptional repressor ,
TrpR ,
Fis ,
ArgR ,
RhaR transcriptional activator ,
SdiA DNA-binding transcriptional dual regulator ,
MalT transcriptional activator ,
EbgR DNA-binding transcriptional repressor ,
Ada DNA-binding transcriptional dual regulator ,
IlvY DNA-binding transcriptional dual regulator ,
LysR DNA-binding transcriptional dual regulator ,
LacI DNA-binding transcriptional repressor ,
RNA polymerase, sigma 70 (sigma D) factor (rpoD) ,
SlyA DNA-binding transcriptional activator ,
Dan-L-tartrate DNA-binding transcriptional activator ,
CaiF ,
YgiV DNA-binding transcriptional repressor ,
TreR DNA-binding transcriptional repressor ,
GlrR DNA-binding transcriptional activator ,
CdaR DNA-binding transcriptional activator ,
KdgR DNA-binding transcriptional repressor ,
CpxR transcriptional dual regulator ,
ArcA transcriptional dual regulator ,
RtcR DNA-binding transcriptional activator ,
AllR DNA-binding transcriptional repressor ,
HcaR transcriptional dual regulator ,
FeaR DNA-binding transcriptional activator ,
Nac DNA-binding transcriptional dual regulator ,
AtoC transcriptional activator; Az protein inhibitor of ODC ,
predicted DNA-binding transcriptional regulator, LYSR-type (abgR) ,
PrpR DNA-binding transcriptional dual regulator ,
MurR ,
DmlR DNA-binding transcriptional regulator ,
McbR DNA-binding transcriptional dual regulator ,
BluR DNA-binding transcriptional repressor ,
NemR DNA-binding transcriptional repressor ,
GadW DNA-binding transcriptional dual regulator ,
Dan (ttdR) ,
BglJ DNA-binding transcriptional regulator ,
TreR transcriptional repressor ,
MlrA DNA binding transcriptional activator ,
AdiY DNA-binding transcriptional activator ,
AscG DNA-binding transcriptional repressor ,
XapR transcriptional activator ,
PhnF predicted transcriptional regulator ,
MngR ,
RNA polymerase, sigma S (sigma 38) factor (rpoS) ,
FabR DNA-binding transcriptional repressor ,
RutR DNA-binding transcriptional dual regulator ,
EnvR DNA-binding transcriptional repressor ,
AcrR DNA-binding transcriptional repressor ,
ZntR transcriptional activator ,
AllS transcriptional activator ,
PdhR DNA-binding transcriptional dual regulator ,
AsnC ,
XylR transcriptional activator ,
MntR ,
FNR ,
FadR DNA-binding transcriptional dual regulator ,
ArgP transcriptional activator ,
HdfR DNA-binding transcriptional dual regulator ,
RhaS ,
AppY DNA-binding transcriptional activator ,
GalR DNA-binding transcriptional dual regulator ,
PrlF antitoxin

Unification Links: GO:0003700


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Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 18.5 on Mon Dec 22, 2014, biocyc11.