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Escherichia coli K-12 substr. MG1655 Gene-Ontology-Terms Class: GO:0003723 - RNA binding

Definition: Interacting selectively and non-covalently with an RNA molecule or a portion thereof.

Parent Classes:
GO:0003676 - nucleic acid binding

Child Classes:
GO:0000049 - tRNA binding (34),
GO:0000498 - base pairing with RNA (103),
GO:0001069 - regulatory region RNA binding (1),
GO:0003725 - double-stranded RNA binding (7),
GO:0003727 - single-stranded RNA binding (7),
GO:0008135 - translation factor activity, RNA binding (17),
GO:0008312 - 7S RNA binding (1),
GO:0019843 - rRNA binding (49),
GO:0034336 - misfolded RNA binding (1),
GO:0044822 - poly(A) RNA binding (35)

Term Members:
tRNA-dihydrouridine synthase C (dusC),
tRNA-dihydrouridine synthase A (dusA),
elongation factor Tu (tufB),
elongation factor Tu (tufA),
tRNA-dihydrouridine synthase B (dusB),
nonspecific DNA binding protein (ybiB),
bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase (acnB),
aconitate hydratase 1 (acnA),
RNA 3'-terminal phosphate cyclase (rtcA),
energy-dependent translational throttle protein (ettA),
RNA chaperone, involved in posttranscriptional control of ProP levels (proQ),
tRNAMet cytidine acetyltransferase (tmcA),
carbon storage regulator; pleiotropic regulatory protein for carbon source metabolism (csrA),
threonylcarbamoyl-AMP synthase (tsaC),
ATP-dependent RNA helicase, specific for 23S rRNA (dbpA),
SrmB, DEAD-box RNA helicase,
Qin prophage; toxin of the RelE-RelB toxin-antitoxin system and cofactor to enhance the repressor activity of RelB,
30S ribosomal subunit protein S17 (rpsQ),
30S ribosomal subunit protein S15 (rpsO),
50S ribosomal subunit protein L14 (rplN),
heat shock protein Hsp15 involved in ribosome recycling (hslR),
CspA DNA-binding transcriptional activator,
acetyl-CoA carboxyltransferase, β subunit (accD),
30S ribosomal subunit protein S8 (rpsH),
30S ribosomal subunit protein S4 (rpsD),
30S ribosomal subunit protein S20 (rpsT),
30S ribosomal subunit protein S12 (rpsL),
30S ribosomal subunit protein S11 (rpsK),
50S ribosomal subunit protein L11 (rplK),
protein chain initiation factor IF-3 (infC),
tRNA pseudouridine synthase I (truA),
16S rRNA m62A1518,m62A1519 dimethyltransferase (rsmA),
GTP-binding protein (era),
30S ribosomal subunit protein S7 (rpsG),
RNase adaptor protein (rapZ),
tRNA pseudouridine 13 synthase (truD),
23S rRNA pseudouridine 2457 synthase (rluE),
protein chain initiation factor IF-1 (infA),
23S rRNA 2'-O-ribose G2251 methyltransferase monomer (rlmB),
tRNA pseudouridine 55 synthase (truB),
23S rRNA m5U1939 methyltransferase (rlmD),
23S rRNA m6A2030 methyltransferase (rlmJ),
predicted rRNA methyltransferase (yjtD),
RNase I, cleaves phosphodiester bond between any two nucleotides,
RNAse HII, degrades RNA of DNA-RNA hybrids (rnhB),
tRNA (cytidine/uridine-2'-O)-ribose methyltransferase (trmL),
predicted methyltransferase (yfiF),
tRNA (Gm18) 2'-O-methyltransferase (trmH),
tRNA Cm32/Um32 methyltransferase (trmJ),
tRNA pseudouridine 65 synthase (truC),
23S rRNA and tRNA pseudouridine synthase (rluA),
ribonuclease G (RNAse G) monomer (rng),
30S ribosomal subunit protein S3 (rpsC),
30S ribosomal subunit protein S10 (rpsJ),
Cascade subunit C,
crRNA endonuclease (casE),
Cascade subunit B (casB),
stress protein, member of the CspA family (cspC),
transcription antiterminator and regulator of RNA stability (cspE),
Qin prophage; cold shock protein; predicted DNA-binding transcriptional regulator (cspB),
ribosome-dependent mRNA interferase, toxin of the YafO-YafN toxin-antitoxin system,
toxin of the YafQ-DinJ toxin-antitoxin system,
toxin of the HicA-HicB toxin-antitoxin system,
toxin of the YoeB-YefM toxin-antitoxin pair,
translation-dependent mRNA interferase, toxin of the HigB-HigA toxin-antitoxin system,
ChpB toxin of the ChpB-ChpS toxin-antitoxin system,
MazF toxin of the MazF-MazE toxin-antitoxin system that exhibits ribonuclease activity,
Cascade subunit A (casA),
Cascade subunit D (casD),
NusB-S10 complex,
fused 23S rRNA m2G2445 methyltransferase and 23S rRNA m7G2069 methyltransferase (rlmL),
GTPase involved in chromosome partitioning and ribosome assembly (obgE),
alanyl-tRNA synthetase (alaS),
tRNA-specific 2-thiouridylase (mnmA),
CRISPR-associated complex for antiviral defense,
16S rRNA m5C1407 methyltransferase (rsmF),
23S rRNA m5C1962 methyltransferase monomer (rlmI),
50S ribosomal subunit protein L25 (rplY),
50S ribosomal subunit protein L5 (rplE),
50S ribosomal subunit protein L22 (rplV),
50S ribosomal subunit protein L4 (rplD),
50S ribosomal subunit protein L24 (rplX),
50S ribosomal subunit protein L3 (rplC),
50S ribosomal subunit protein L2 (rplB),
predicted transcriptional accessory protein (yhgF),
putative tRNA synthetase (ygjH),
toxin-like protein of the SOS response (symE),
23S rRNA pseudouridine 2605 synthase (rluB),
16S rRNA m5C967 methyltransferase (rsmB),
23S rRNA pseudouridine synthase (rluD),
23S rRNA pseudouridine 2604 synthase (rluF),
ribonuclease II (rnb),
ATP-dependent RNA helicase (rhlE),
RNase E (rne),
RNase R (rnr),
BglG transcriptional antiterminator (monomer),
50S ribosomal subunit protein L18 (rplR),
predicted RNA-binding protein (yhbY),
tyrosyl-tRNA synthetase (tyrS),
protein component of the signal recognition particle (SRP) (ffh),
30S ribosomal subunit protein S1 (rpsA),
50S ribosomal subunit protein L6 (rplF),
50S ribosomal subunit protein L21 (rplU),
transcription termination factor Rho monomer; polarity suppressor,
transcription termination/antitermination L factor (nusA),
50S ribosomal subunit protein L23 (rplW),
50S ribosomal subunit protein L16 (rplP),
poly(A) polymerase I (pcnB),
16S rRNA pseudouridine 516 synthase (rsuA),
23S rRNA pseudouridine synthase (rluC),
DeaD, DEAD-box RNA helicase,
DNA replication inhibitor (cspD),
threonyl-tRNA synthetase (thrS),
thymidylate synthase (thyA),
small protein B (smpB),
RNase P protein component; processes tRNA, 4.5S RNA (rnpA),
RNase III (rnc),
30S ribosomal subunit protein S9 (rpsI),
30S ribosomal subunit protein S5 (rpsE),
30S ribosomal subunit protein S19 (rpsS),
30S ribosomal subunit protein S18 (rpsR),
30S ribosomal subunit protein S13 (rpsM),
50S ribosomal subunit protein L9 (rplI),
50S ribosomal subunit protein L33 (rpmG),
50S ribosomal subunit protein L31 (rpmE),
50S ribosomal subunit protein L29 (rpmC),
50S ribosomal subunit protein L27 (rpmA),
50S ribosomal subunit protein L20 (rplT),
50S ribosomal subunit protein L1 (rplA),
50S ribosomal subunit protein L19 (rplS),
50S ribosomal subunit protein L10 (rplJ),
transcription antitermination protein NusB,
RNA-binding protein that affects many cellular processes; homolog of mammalian Sm/Sm-like proteins (hfq),
phenylalanyl-tRNA synthetase β-chain (pheT),
fused tRNA nucleotidyltransferase / 2',3'-cyclic phosphodiesterase / 2' nucleotidase and phosphatase (cca),
polynucleotide phosphorylase monomer (pnp),
50S ribosomal subunit protein L15 (rplO),
30S ribosomal subunit protein S6 (rpsF),
methionyl-tRNA synthetase (metG),
predicted RNA-binding protein (ybcJ)

Unification Links: GO:0003723

Relationship Links: Reactome:RELATED-TO:REACT_12458, Reactome:RELATED-TO:REACT_29965, Reactome:RELATED-TO:REACT_77167, Reactome:RELATED-TO:REACT_78197, Reactome:RELATED-TO:REACT_87164, Reactome:RELATED-TO:REACT_89329, Reactome:RELATED-TO:REACT_90531, Reactome:RELATED-TO:REACT_98683, Reactome:RELATED-TO:REACT_101703, Reactome:RELATED-TO:REACT_103323, Reactome:RELATED-TO:REACT_106430, Reactome:RELATED-TO:REACT_107757, Reactome:RELATED-TO:REACT_108232, Reactome:RELATED-TO:REACT_108368, Reactome:RELATED-TO:REACT_109723

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Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by Pathway Tools version 19.5 (software by SRI International) on Fri Apr 29, 2016, biocyc11.