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discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
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Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
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Escherichia coli K-12 substr. MG1655 Gene-Ontology-Terms Class: GO:0003723 - RNA binding

Definition: Interacting selectively and non-covalently with an RNA molecule or a portion thereof.

Parent Classes:
GO:0003676 - nucleic acid binding

Child Classes:
GO:0000049 - tRNA binding (30) ,
GO:0000498 - base pairing with RNA (102) ,
GO:0003725 - double-stranded RNA binding (6) ,
GO:0003727 - single-stranded RNA binding (7) ,
GO:0008135 - translation factor activity, nucleic acid binding (17) ,
GO:0008312 - 7S RNA binding (1) ,
GO:0019843 - rRNA binding (47) ,
GO:0034336 - misfolded RNA binding (1) ,
GO:0044822 - poly(A) RNA binding (31)

Term Members:
RNA chaperone, involved in posttranscriptional control of ProP levels (proQ) ,
tRNAMet cytidine acetyltransferase (tmcA) ,
carbon storage regulator; pleiotropic regulatory protein for carbon source metabolism (csrA) ,
protein involved in synthesis of threonylcarbamoyladenosine-modified tRNA (tsaC) ,
ATP-dependent RNA helicase, specific for 23S rRNA (dbpA) ,
SrmB, DEAD-box RNA helicase ,
Qin prophage; toxin of the RelE-RelB toxin-antitoxin system and cofactor to enhance the repressor activity of RelB ,
30S ribosomal subunit protein S17 (rpsQ) ,
30S ribosomal subunit protein S15 (rpsO) ,
50S ribosomal subunit protein L14 (rplN) ,
heat shock protein Hsp15 involved in ribosome recycling (hslR) ,
CspA DNA-binding transcriptional activator ,
acetyl-CoA carboxyltransferase, β subunit (accD) ,
30S ribosomal subunit protein S8 (rpsH) ,
30S ribosomal subunit protein S4 (rpsD) ,
30S ribosomal subunit protein S20 (rpsT) ,
30S ribosomal subunit protein S12 (rpsL) ,
30S ribosomal subunit protein S11 (rpsK) ,
50S ribosomal subunit protein L11 (rplK) ,
protein chain initiation factor IF-3 (infC) ,
tRNA pseudouridine synthase I (truA) ,
16S rRNA m62A1518,m62A1519 dimethyltransferase (rsmA) ,
GTP-binding protein (era) ,
30S ribosomal subunit protein S7 (rpsG) ,
RNase adaptor protein (rapZ) ,
tRNA pseudouridine 13 synthase (truD) ,
23S rRNA pseudouridine 2457 synthase (rluE) ,
protein chain initiation factor IF-1 (infA) ,
23S rRNA 2'-O-ribose G2251 methyltransferase monomer (rlmB) ,
tRNA pseudouridine 55 synthase (truB) ,
23S rRNA m5U1939 methyltransferase (rlmD) ,
23S rRNA m6A2030 methyltransferase (rlmJ) ,
predicted rRNA methyltransferase (yjtD) ,
RNase I, cleaves phosphodiester bond between any two nucleotides ,
RNAse HII, degrades RNA of DNA-RNA hybrids (rnhB) ,
tRNA (cytidine/uridine-2'-O)-ribose methyltransferase (trmL) ,
predicted methyltransferase (yfiF) ,
tRNA (Gm18) 2'-O-methyltransferase (trmH) ,
tRNA Cm32/Um32 methyltransferase (trmJ) ,
tRNA pseudouridine 65 synthase (truC) ,
23S rRNA and tRNA pseudouridine synthase (rluA) ,
ribonuclease G (RNAse G) monomer (rng) ,
30S ribosomal subunit protein S3 (rpsC) ,
30S ribosomal subunit protein S10 (rpsJ) ,
ProB ,
Cascade subunit C ,
crRNA endonuclease (casE) ,
Cascade subunit B (casB) ,
stress protein, member of the CspA family (cspC) ,
transcription antiterminator and regulator of RNA stability (cspE) ,
Qin prophage; cold shock protein; predicted DNA-binding transcriptional regulator (cspB) ,
ribosome-dependent mRNA interferase, toxin of the YafO-YafN toxin-antitoxin system ,
toxin of the YafQ-DinJ toxin-antitoxin system ,
toxin of the HicA-HicB toxin-antitoxin system ,
toxin of the YoeB-YefM toxin-antitoxin pair ,
translation-dependent mRNA interferase, toxin of the HigB-HigA toxin-antitoxin system ,
ChpB toxin of the ChpB-ChpS toxin-antitoxin system ,
MazF toxin of the MazF-MazE toxin-antitoxin system that exhibits ribonuclease activity ,
Cascade subunit A (casA) ,
Cascade subunit D (casD) ,
NusB-NusE complex ,
fused 23S rRNA m2G2445 methyltransferase and 23S rRNA m7G2069 methyltransferase (rlmL) ,
GTPase involved in chromosome partitioning and ribosome assembly (obgE) ,
alanyl-tRNA synthetase (alaS) ,
tRNA-specific 2-thiouridylase (mnmA) ,
CRISPR-associated complex for antiviral defense ,
ThiI ,
16S rRNA m5C1407 methyltransferase (rsmF) ,
23S rRNA m5C1962 methyltransferase monomer (rlmI) ,
50S ribosomal subunit protein L25 (rplY) ,
50S ribosomal subunit protein L5 (rplE) ,
50S ribosomal subunit protein L22 (rplV) ,
50S ribosomal subunit protein L4 (rplD) ,
50S ribosomal subunit protein L24 (rplX) ,
50S ribosomal subunit protein L3 (rplC) ,
50S ribosomal subunit protein L2 (rplB) ,
predicted transcriptional accessory protein (yhgF) ,
putative tRNA synthetase (ygjH) ,
toxin-like protein of the SOS response (symE) ,
23S rRNA pseudouridine 2605 synthase (rluB) ,
16S rRNA m5C967 methyltransferase (rsmB) ,
23S rRNA pseudouridine synthase (rluD) ,
23S rRNA pseudouridine 2604 synthase (rluF) ,
ribonuclease II (rnb) ,
ATP-dependent RNA helicase (rhlE) ,
RNase E (rne) ,
RNase R (rnr) ,
BglG transcriptional antiterminator (monomer) ,
50S ribosomal subunit protein L18 (rplR) ,
predicted RNA-binding protein (yhbY) ,
tyrosyl-tRNA synthetase (tyrS) ,
protein component of the signal recognition particle (SRP) (ffh) ,
30S ribosomal subunit protein S1 (rpsA) ,
50S ribosomal subunit protein L6 (rplF) ,
50S ribosomal subunit protein L21 (rplU) ,
transcription termination factor Rho monomer; polarity suppressor ,
transcription termination/antitermination L factor (nusA) ,
50S ribosomal subunit protein L23 (rplW) ,
50S ribosomal subunit protein L16 (rplP) ,
poly(A) polymerase I (pcnB) ,
16S rRNA pseudouridine 516 synthase (rsuA) ,
23S rRNA pseudouridine synthase (rluC) ,
DeaD, DEAD-box RNA helicase ,
DNA replication inhibitor (cspD) ,
threonyl-tRNA synthetase (thrS) ,
RhlB ,
thymidylate synthase (thyA) ,
small protein B (smpB) ,
RNase P protein component; processes tRNA, 4.5S RNA (rnpA) ,
RNase III (rnc) ,
30S ribosomal subunit protein S9 (rpsI) ,
30S ribosomal subunit protein S5 (rpsE) ,
30S ribosomal subunit protein S19 (rpsS) ,
30S ribosomal subunit protein S18 (rpsR) ,
30S ribosomal subunit protein S13 (rpsM) ,
50S ribosomal subunit protein L9 (rplI) ,
50S ribosomal subunit protein L33 (rpmG) ,
50S ribosomal subunit protein L31 (rpmE) ,
50S ribosomal subunit protein L29 (rpmC) ,
50S ribosomal subunit protein L27 (rpmA) ,
50S ribosomal subunit protein L20 (rplT) ,
50S ribosomal subunit protein L1 (rplA) ,
50S ribosomal subunit protein L19 (rplS) ,
50S ribosomal subunit protein L10 (rplJ) ,
transcription antitermination protein NusB ,
RNA-binding protein that affects many cellular processes; homolog of mammalian Sm/Sm-like proteins (hfq) ,
phenylalanyl-tRNA synthetase β-chain (pheT) ,
fused tRNA nucleotidyltransferase / 2',3'-cyclic phosphodiesterase / 2' nucleotidase and phosphatase (cca) ,
polynucleotide phosphorylase monomer (pnp) ,
50S ribosomal subunit protein L15 (rplO) ,
30S ribosomal subunit protein S6 (rpsF) ,
methionyl-tRNA synthetase (metG) ,
predicted RNA-binding protein (ybcJ)

Unification Links: GO:0003723


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Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 18.5 on Sat Dec 20, 2014, BIOCYC14B.