Metabolic Modeling Tutorial
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BioCyc websites down
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Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
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Escherichia coli K-12 substr. MG1655 Gene-Ontology-Terms Class: GO:0005515 - protein binding

Synonyms: GO:0045308, protein amino acid binding

Definition: Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

Parent Classes:
GO:0005488 - binding

Child Classes:
GO:0001098 - basal transcription machinery binding (3) ,
GO:0001948 - glycoprotein binding (1) ,
GO:0008092 - cytoskeletal protein binding (2) ,
GO:0008134 - transcription factor binding (18) ,
GO:0019899 - enzyme binding (21) ,
GO:0030674 - protein binding, bridging (2) ,
GO:0031072 - heat shock protein binding (3) ,
GO:0032403 - protein complex binding (2) ,
GO:0032794 - GTPase activating protein binding (1) ,
GO:0032947 - protein complex scaffold (1) ,
GO:0042802 - identical protein binding (390) ,
GO:0043621 - protein self-association (1) ,
GO:0044183 - protein binding involved in protein folding (3) ,
GO:0045152 - antisigma factor binding (1) ,
GO:0046983 - protein dimerization activity (171) ,
GO:0051082 - unfolded protein binding (19) ,
GO:0051087 - chaperone binding (6) ,
GO:0070678 - preprotein binding (1)

Term Members:
Cascade subunit D (casD) ,
Cascade subunit A (casA) ,
RNA polymerase, sigma 32 (sigma H) factor (rpoH) ,
AqpZ ,
cytochrome bd-I terminal oxidase subunit II (cydB) ,
cytochrome bd-I terminal oxidase subunit I (cydA) ,
DLP12 prophage; DNA base-flipping protein (ybcN) ,
fumarate reductase ,
cytochrome bo terminal oxidase subunit III (cyoC) ,
cytochrome bo terminal oxidase subunit IV (cyoD) ,
GTP cyclohydrolase II (ribA) ,
GlpK ,
L-serine deaminase I (sdaA) ,
glutamate decarboxylase A subunit (gadA) ,
serine hydroxymethyltransferase (glyA) ,
50S ribosomal subunit protein L3 (rplC) ,
inner membrane protein associated with the ribosome (yqjD) ,
ribose ABC transporter - putative periplasmic binding protein (rbsB) ,
hyperosmotically inducible periplasmic protein (osmY) ,
elongation factor Tu (tufB) ,
tryptophanase (tnaA) ,
predicted outer membrane lipoprotein (ybaY) ,
osmotically inducible protein OsmE ,
galactose ABC transporter - periplasmic binding protein (mglB) ,
PurA ,
Ppk ,
50S ribosomal subunit protein L4 (rplD) ,
predicted amidotransferase (yafJ) ,
CP4-57 prophage; toxin of the YpjF-YfjZ toxin-antitoxin system ,
MqsA antitoxin of the MqsRA toxin-antitoxin system and DNA-binding transcriptional repressor ,
methionine-oxo-acid transaminase, PLP-dependent (ybdL) ,
outer membrane protein associated with E. coli common pilus formation - cryptic (ecpC) ,
predicted DNA-binding transcriptional regulator (yfaX) ,
predicted DNA-binding transcriptional regulator, LysR-type (yahB) ,
3-phenylpropionate dioxygenase, predicted ferredoxin reductase subunit (hcaD) ,
Qin prophage; predicted protein (flxA) ,
Rac prophage; predicted defective peptidase (rzpR) ,
citrate lyase synthetase (citC) ,
E. coli common pilus chaperone - cryptic (ecpB) ,
conserved protein (ybdM) ,
peptidyl-lysine acetyltransferase (pka) ,
conserved protein (eutQ) ,
aminopeptidase (ypdF) ,
phosphohistidine phosphatase (sixA) ,
acetyl-CoA:acetoacetyl-CoA transferase, β subunit (atoA) ,
lipid kinase (yegS) ,
Ugd ,
predicted sensory kinase in two-component regulatory system with YedW (yedV) ,
predicted protein, C-ter fragment (yedS_3) ,
predicted protein, N-ter fragment (yedS_1) ,
predicted protein, middle fragment (yedS_2) ,
KdgR DNA-binding transcriptional repressor ,
predicted diguanylate cyclase (yeaJ) ,
succinylglutamate desuccinylase (astE) ,
Qin prophage; predicted defective integrase (intQ) ,
predicted peptidase (ydcP) ,
predicted phosphatase, inner membrane protein (ynbD) ,
predicted hydrolase (ynbC) ,
PaaX ,
ring 1,2-phenylacetyl-CoA epoxidase, structural subunit (paaC) ,
Rac prophage; predicted DNA-binding protein (ydaW) ,
protein-lysine deacetylase and desuccinylase (cobB) ,
poly-β-1,6-N-acetyl-D-glucosamine synthase - PgaC subunit ,
fused 23S rRNA m2G2445 methyltransferase and 23S rRNA m7G2069 methyltransferase (rlmL) ,
predicted transferase with NAD(P)-binding Rossmann-fold domain (ybhK) ,
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinone hydroxylase (ubiF) ,
CP4-6 prophage; partial transposase of insertion element IS911A, interrupted by insertion of IS30 element (insO-1) ,
poly-β-1,6-N-acetyl-D-glucosamine synthase - PgaD subunit ,
protein chain initiation factor IF-1 (infA) ,
putative ferredoxin possibly involved in anaerobic carnitine metabolism (fixX) ,
NemR DNA-binding transcriptional repressor ,
CP4-44 prophage; predicted protein (yeeW) ,
predicted protein (yebV) ,
hypothetical protein (ydcY) ,
ClpB chaperone ,
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (ispG) ,
flavodoxin 1 (fldA) ,
50S ribosomal subunit protein L22 (rplV) ,
predicted elecron transfer flavoprotein subunit, ETFP adenine nucleotide-binding domain (fixA) ,
RNA Polymerase (RNAP)-binding ATPase and RNAP recycling factor (hepA) ,
predicted transporter (yggR) ,
biosynthetic peptidoglycan transglycosylase (mtgA) ,
putative protein secretion protein for export (gspE) ,
predicted oxidoreductase (ybdH) ,
RNA chaperone, involved in posttranscriptional control of ProP levels (proQ) ,
fructoselysine 6-kinase (frlD) ,
putative protein secretion protein for export (gspH) ,
predicted pyruvate formate lyase activating enzyme (yjjW) ,
L,D-transpeptidase ErfK ,
predicted fimbrial-like adhesin protein (ybgD) ,
23S rRNA pseudouridine 2605 synthase (rluB) ,
predicted DNA-binding response regulator in two-component regulatory system (yhjB) ,
23S rRNA m2A2503 methyltransferase and tRNA m2A37 methyltransferase (rlmN) ,
CbpA monomer ,
NADH:ubiquinone oxidoreductase, chain G (nuoG) ,
flagellar biosynthesis, hook-filament junction protein 1 (flgK) ,
phosphoribosylglycinamide formyltransferase 2 (purT) ,
conserved protein (yeeD) ,
SdsRQP multidrug efflux transport system - uncharacterised component (mdtO) ,
protein possibly involved in ribosome structure or function (typA) ,
glyoxalase III, Hsp31 molecular chaperone (hchA) ,
predicted electron transfer flavoprotein, NAD/FAD-binding domain and ETFP adenine nucleotide-binding domain-like (fixB) ,
carnitine-CoA ligase (caiC) ,
transcription-repair coupling factor (mfd) ,
ribonuclease II (rnb) ,
LeuD ,
peptidase T ,
[protein-PII] uridylyltransferase (glnD) ,
cobalamin-independent homocysteine transmethylase (metE) ,
meso-diaminopimelic acid-D-alanyl endopeptidase / D-alanyl-D-alanine carboxypeptidase (dacB) ,
flagellar cap protein FliD; filament capping protein; enables filament assembly ,
AccC ,
peptidyl-prolyl cis-trans isomerase B (rotamase B) (ppiB) ,
primosomal replication protein N'' (priC) ,
geranyl diphosphate synthase / farnesyl diphosphate synthase (ispA) ,
pyruvate kinase II monomer (pykA) ,
stationary-phase protein with possible role in p-aminobenzoate or folate biosynthesis (fic) ,
protein involved in processing of HyaA and HyaB proteins (hyaD) ,
MalX PTS permease ,
FhlA transcriptional activator ,
nitrate reductase Z, β subunit (narY) ,
cell division inhibitor of the MinC-MinD-MinE and DicB-MinC systems that regulate septum placement ,
UbiG ,
GlmS ,
NADPH nitroreductase (nfsA) ,
RhsC protein in rhs element ,
PhnG subunit of methylphosphonate degradation complex ,
hydrogenase 3 and formate hydrogenlyase complex, HycG subunit ,
ATP-dependent dsDNA exonuclease (sbcC) ,
RNA polymerase, sigma 24 (sigma E) factor (rpoE) ,
SecG ,
SecD ,
SeqA, negative modulator of initiation of replication ,
regulator of nucleoside diphosphate kinase (rnk) ,
conserved protein (yeiW) ,
YehT ,
SucB ,
subunit of E1(0) component of 2-oxoglutarate dehydrogenase (sucA) ,
NADH:ubiquinone oxidoreductase, chain E (nuoE) ,
NtrC transcriptional dual regulator (glnG) ,
ribonuclease E inhibitor protein B (rraB) ,
Gsk ,
Gss ,
predicted carboxysome structural protein (eutN) ,
DpiA ,
CpxR transcriptional dual regulator ,
CpxA sensory histidine kinase ,
50S ribosomal subunit protein L23 (rplW) ,
branched chain amino acid transporter BrnQ ,
stationary phase translation inhibitor and ribosome stability factor (raiA) ,
predicted protein (yejG) ,
EvgA transcriptional regulator ,
RutR DNA-binding transcriptional dual regulator ,
AcrR DNA-binding transcriptional repressor ,
RbsR DNA-binding transcriptional dual regulator ,
PurR ,
AllR DNA-binding transcriptional repressor ,
GlcC transcriptional dual regulator ,
GlpR DNA-binding transcriptional repressor ,
CRP transcriptional dual regulator ,
Lrp transcriptional dual regulator ,
AsnC ,
H-NS-like DNA-binding protein with RNA chaperone activity (stpA) ,
hydrogenase 1, large subunit (hyaB) ,
glutathione S-transferase B (gstB) ,
stringent starvation protein A (sspA) ,
dihydrofolate reductase ,
cytochrome bo terminal oxidase subunit I (cyoB) ,
citrate synthase monomer (gltA) ,
biotin carboxyl carrier protein (accB) ,
ATP synthase F1 complex - gamma subunit (atpG) ,
predicted oxidoreductase (ybjN) ,
LexA-regulated protein (ybfE) ,
ATP binding protein SapF of predicted ABC transporter ,
putative ATP-binding component of a transport system (ybiT) ,
thioredoxin reductase monomer (trxB) ,
pyruvate formate-lyase activating enzyme (pflA) ,
MntR ,
AraC ,
site-specific tyrosine recombinase (xerC) ,
exonuclease VII, small subunit (xseB) ,
DNA repair; excision nuclease subunit B (uvrB) ,
conserved protein (yacL) ,
conserved protein (ycfP) ,
conserved protein (yaiI) ,
ribosome maturation protein (rimP) ,
triose phosphate isomerase monomer (tpiA) ,
predicted DNA-binding transcriptional regulator of maltose metabolism (sfsA) ,
ribosome recycling factor (frr) ,
30S ribosomal subunit protein S5 (rpsE) ,
30S ribosomal subunit protein S18 (rpsR) ,
30S ribosomal subunit protein S12 (rpsL) ,
50S ribosomal subunit protein L32 (rpmF) ,
50S ribosomal subunit protein L28 (rpmB) ,
50S ribosomal subunit protein L27 (rpmA) ,
NikR DNA-binding transcriptional repressor, Ni-binding ,
Fis ,
ATP synthase F1 complex - epsilon subunit (atpC) ,
ArgG ,
LeuC ,
excision nuclease subunit A (uvrA) ,
PflB ,
e14 prophage; predicted tail fiber assembly protein (tfaE) ,
UDP-glucose 4-epimerase monomer (galE) ,
8-oxo-dGTP diphosphatase (mutT) ,
3-dehydroquinate synthase (aroB) ,
lysophospholipase L(2) (pldB) ,
HisB ,
Ada DNA-binding transcriptional dual regulator ,
L-tartrate dehydratase, α subunit (ttdA) ,
protein used in recombination and DNA repair (recN) ,
Trg ,
exonuclease VII, large subunit (xseA) ,
ribose ABC transporter - putative ATP binding subunit (rbsA) ,
3-deoxy-D-manno-octulosonate cytidylyltransferase (kdsB) ,
50S ribosomal subunit protein L15 (rplO) ,
30S ribosomal subunit protein S6 (rpsF) ,
glycyl-tRNA synthetase, β subunit (glyS) ,
glycyl-tRNA synthetase, α subunit (glyQ) ,
methionyl-tRNA synthetase (metG) ,
mannose-6-phosphate isomerase (manA) ,
AroH ,
LysA ,
ferredoxin-type protein (napF) ,
RalA antitoxin of the RalRA toxin-antitoxin system ,
regulatory protein RecX; inhibitor of RecA ,
chitobiose PTS permease - ChbB subunit ,
chitobiose PTS permease - ChbA subunit ,
O-acetylserine sulfhydrylase A (cysK) ,
ribosome-associated ATPase (rbbA) ,
cell division factor ZapE with ATPase activity ,
ribosomal protein-arginine oxygenase (roxA) ,
peptidyl-prolyl cis-trans isomerase (fkpB) ,
molybdenum cofactor cytidylyltransferase (mocA) ,
molybdenum cofactor insertion chaperone for PaoABC (paoD) ,
RydC small regulatory RNA ,
stimulator of RavA ATPase activity (viaA) ,
flap endonuclease (ygdG) ,
SufC component of SufBCD Fe-S cluster scaffold complex ,
LolE ,
TatB ,
TatC ,
cytochrome c-type biogenesis protein (ccmF) ,
formate dehydrogenase-O, α subunit (fdoG) ,
L-methionine / D-methionine ABC transporter - membrane subunit (metI) ,
L-methionine / D-methionine ABC transporter - ATP binding subunit (metN) ,
ATP-dependent helicase (dinG) ,
glycine betaine / proline ABC transporter - membrane subunit (proW) ,
glycine betaine / proline ABC transporter - ATP binding subunit (proV) ,
BglG transcriptional antiterminator (monomer) ,
ssDNA-binding protein (ssb) ,
transcription termination factor Rho monomer; polarity suppressor ,
modulator of Rho-dependent transcription termination (rof) ,
transcription termination factor NusG ,
octaprenyl diphosphate synthase (ispB) ,
H-NS DNA-binding transcriptional dual regulator (hns) ,
CcmH ,
HPr (ptsH) ,
Lon ,
methionine adenosyltransferase (metK) ,
RNA-binding protein that affects many cellular processes; homolog of mammalian Sm/Sm-like proteins (hfq) ,
protein disulfide oxidoreductase - DsbBreduced ,
PtsI ,
vitamin B12 ABC transporter - ATP binding subunit (btuD) ,
vitamin B12 ABC transporter - membrane subunit (btuC) ,
K+ transporting ATPase - KdpC subunit ,
K+ transporting ATPase - ATP binding subunit (kdpB) ,
toxin of the YoeB-YefM toxin-antitoxin pair ,
nucleoid-associated protein (yejK) ,
regulator of RpoS (rssB) ,
RfaH transcriptional antiterminator ,
Spot 42 small regulatory RNA (spf) ,
fermentation/respiration switch protein (frsA) ,
negative feedback regulator of the PhoQP system (mgrB) ,
anaerobic glycerol-3-phosphate dehydrogenase subunit A (glpA) ,
MlrA DNA binding transcriptional activator ,
diguanylate cyclase (ydaM) ,
cyclic di-GMP phosphodiesterase (gmr) ,
acetohydroxy acid synthase I, small subunit (ilvN) ,
acetohydroxy acid synthase I, large subunit (ilvB) ,
molybdopterin-guanine dinucleotide biosynthesis adaptor protein (mobB) ,
RNA polymerase holoenzyme assembly factor Crl ,
tyrosine lyase (thiH) ,
sulfate adenylyltransferase, CysD subunit ,
sulfate adenylyltransferase, CysN subunit ,
outer membrane lipoprotein - activator of PBP1B activity (lpoB) ,
PriB ,
sulfite reductase, hemoprotein subunit (cysI) ,
ThiG ,
ThiS adenylyltransferase (thiF) ,
OxyS small regulatory RNA ,
mannose PTS permease - ManX subunit ,
DNA polymerase IV (Y-family DNA polymerase; translesion DNA synthesis) (dinB) ,
oxidoreductase subunit (ynfF) ,
oxidoreductase subunit (ynfE) ,
N-acetylmuramic acid 6-phosphate etherase (murQ) ,
2-keto-3-deoxy-L-rhamnonate aldolase (yfaU) ,
MdtABC-TolC multidrug efflux system - membrane subunit (mdtC) ,
MdtABC-TolC multidrug efflux system - membrane subunit (mdtB) ,
Mlc titration factor (mtfA) ,
MacAB-TolC macrolide efflux transport system - membrane subunit (macB) ,
MacAB-TolC macrolide efflux transport system - membrane fusion protein ,
regulator of DnaA that prevents premature reinitiation of DNA replication (hda) ,
murein lipoprotein (lpp) ,
50S ribosomal subunit protein L2 (rplB) ,
inner membrane protein that interacts with cell division proteins (ymgF) ,
RstA transcriptional regulator ,
Mlc DNA-binding transcriptional repressor ,
MzrA ,
TorS monomer ,
BglJ DNA-binding transcriptional regulator ,
chaperone protein for trimethylamine-N-oxide oxidoreductase I (torD) ,
large subunit of periplasmic nitrate reductase, molybdoprotein (napA) ,
TorC trimethylamine N-oxide reductase, cytochrome c-type subunit ,
trimethylamine N-oxide reductase, catalytic subunit (torA) ,
AidB ,
MarR transcriptional repressor ,
GalS DNA-binding transcriptional dual regulator ,
formate dehydrogenase N, α subunit (fdnG) ,
KdpE transcriptional activator ,
KdpD ,
TolA ,
NarW, probable private chaperone for NarZ nitrate reductase subunit ,
primosome factor N' (priA) ,
SecB ,
guanosine 3'-diphosphate 5'-triphosphate 3'-diphosphatase [multifunctional] (spoT) ,
SOS mutagenesis; error-prone repair; processed to UmuD'; forms complex with UmuC ,
SOS cell division inhibitor (sulA) ,
transcription termination/antitermination L factor (nusA) ,
EnvZ ,
chromosome replication; initiation and chain elongation (dnaC) ,
chemotaxis regulator transmitting signal to flagellar motor component (cheY) ,
LptC ,
LptA ,
EntB monomer ,
DnaB ,
cell division protein FtsX ,
tonB energy transducing system - ExbD subunit ,
stationary phase nucleoid protein that sequesters iron and protects DNA from damage (dps) ,
DNA primase (dnaG) ,
pyridine nucleotide transhydrogenase, β subunit (pntB) ,
ArcA transcriptional dual regulator ,
CheZ ,
Outer Membrane Protein Assembly Complex - BamA subunit ,
primosomal protein DnaT ,
RNA polymerase, α subunit (rpoA) ,
DNA strand exchange and recombination protein with protease and nuclease activity (recA) ,
rep ,
DNA mismatch endonuclease of the very short patch (VSP) mismatch repair pathway (vsr) ,
CheA ,
pyridine nucleotide transhydrogenase, α subunit (pntA) ,
OmpC ,
DNA polymerase III, τ subunit (dnaX) ,
essential cell division protein FtsQ ,
ferric enterobactin / colicin B / colicin D outer membrane porin FepA ,
SOS mutagenesis and repair (umuC) ,
GalR DNA-binding transcriptional dual regulator ,
chromosomal replication initiator protein DnaA; DNA-binding transcriptional dual regulator ,
maltose ABC transporter - membrane subunit (malF) ,
glutamate-1-semialdehyde aminotransferase (hemL) ,
HemA ,
iron-sulfur cluster scaffold protein (nfuA) ,
isopentenyl-adenosine A37 tRNA methylthiolase (miaB) ,
NADH:ubiquinone oxidoreductase, chain CD (nuoC) ,
NAD(P)H-dependent FMN reductase (ssuE) ,
flagellar biosynthesis protein FliT ,
flagellar biosynthesis protein FlgN ,
H-NS- and StpA-binding protein (cnu) ,
GlmZ small regulatory RNA ,
GlmY small regulatory RNA ,
RNase adaptor protein (rapZ) ,
predicted 5-keto 4-deoxyuronate isomerase monomer (kduI) ,
cell division protein DamX ,
ribosome maturation protein (rimM) ,
AcrAB-TolC multidrug efflux system - permease subunit (acrB) ,
UDP-N-acetylmuramate-alanine ligase (murC) ,
hydrogenase 3, large subunit (hycE) ,
small membrane protein that interacts with the AcrAB-TolC multidrug efflux pump (acrZ) ,
sulfur transfer protein (tusA) ,
L-cysteine desulfurase (sufS) ,
RNase R (rnr) ,
maturation factor for PanD (panZ) ,
ribosome-binding ATPase, inhibitor of catalase activity (ychF) ,
predicted 2,3-dehydroadipyl-CoA hydratase (paaF) ,
predicted ring 1,2-epoxyphenylacetyl-CoA isomerase (oxepin-CoA forming) (paaG) ,
HypC, protein involved in hydrogenase 3 maturation ,
Ppa ,
Outer Membrane Protein Assembly Complex - BamB subunit ,
acetaldehyde dehydrogenase 2 (mhpF) ,
aldehyde dehydrogenase: molybdenum cofactor-binding subunit (paoC) ,
aldehyde dehydrogenase, FAD-binding subunit (paoB) ,
aldehyde dehydrogenase, Fe-S subunit (paoA) ,
DMS reductase maturation protein (dmsD) ,
4-hydroxy-2-ketovalerate aldolase (mhpE) ,
ribonucleoside hydrolase 1 (pyrimidine-specific) (rihA) ,
dimethyl sulfoxide reductase, chain A (dmsA) ,
MreC ,
NtrB (glnL) ,
Outer Membrane Protein Assembly Complex - BamD subunit ,
MreD ,
MreB ,
Outer Membrane Protein Assembly Complex - BamE subunit ,
small noncoding RNA involved in nucleoid organization (nc1) ,
β-lactam resistance protein (blr) ,
diguanylate cyclase (dosC) ,
c-di-GMP phosphodiesterase, heme-regulated (dosP) ,
50S ribosomal subunit protein L14 (rplN) ,
ribosomal silencing factor (rsfS) ,
bacterioferritin-associated ferredoxin (bfd) ,
RelB-antitoxin and DNA-binding transcriptional repressor ,
essential cell division protein FtsA ,
prophage excisionase and response regulator inhibitor (torI) ,
macrodomain Ter protein (matP) ,
DnaA initiator-associating factor for replication initiation (diaA) ,
Hsc62, Hsp70 family chaperone, binds to RpoD and inhibits transcription (hscC) ,
CP4-44 prophage; antitoxin of the CbtA-CbeA toxin-antitoxin system ,
cell division factor ZapD ,
regulator of iron-sulfur cluster assembly (iscX) ,
hydrogenase 2 accessory protein (hybG) ,
RNA polymerase, ω subunit (rpoZ) ,
haemolysin expression modulating protein (hha) ,
alkyl hydroperoxide reductase, AhpC component ,
HypD, scaffold protein for assembly of the Fe-(CN)2CO cofactor ,
accessory protein for nickel incorporation into hydrogenase 3 (hypA) ,
alkanesulfonate monooxygenase, FMNH2-dependent (ssuD) ,
MicF small regulatory RNA ,
peptidyl-prolyl cis-trans isomerase C (rotamase C) (ppiC) ,
McaS small regulatory RNA ,
toxin of the CptA-CptB toxin-antitoxin system ,
protein chain initiation factor IF2 (infB) ,
regulatory ATPase (ravA) ,
DNA polymerase III, χ subunit (holC) ,
DNA polymerase III, ψ subunit (holD) ,
ecotin monomer; serine protease inhibitor ,
topoisomerase IV subunit A (parC) ,
membrane ATPase of the MinC-MinD-MinE system that regulates septum placement ,
maltose ABC transporter - periplasmic binding protein (malE) ,
cell division topological specificity factor and inhibitory component of the MinC-MinD-MinE system that regulates septum placement ,
polynucleotide phosphorylase monomer (pnp) ,
zinc-binding phosphatase (ycdX) ,
protein involved in maturation of YcdX (ycdY) ,
MazE antitoxin of the MazF-MazE toxin-antitoxin system ,
chaperone modulator protein CbpM ,
molybdenum cofactor guanylyltransferase (mobA) ,
flagellar motor switch protein FliN ,
succinyl-CoA synthetase, α subunit (sucD) ,
DNA gyrase, subunit B (gyrB) ,
DNA gyrase, subunit A ,
RNA polymerase, sigma 28 (sigma F) factor (fliA) ,
anti-sigma factor for FliA (σ28) (flgM) ,
CheW ,
succinyl-CoA synthetase, β subunit ,
aspartate carbamoyltransferase, PyrI subunit ,
peptidase component of the HslVU protease ,
glycerol-3-phosphate acyltransferase (plsB) ,
aspartate carbamoyltransferase, PyrB subunit ,
protein chain initiation factor IF-3 (infC) ,
apo-[acyl carrier protein] (acpP) ,
Tar ,
flagellar motor switch protein FliM ,
peptidoglycan synthetase; penicillin-binding protein 1A (mrcA) ,
CP4-44 prophage; toxin of the CbtA-CbeA toxin-antitoxin system ,
rseB ,
regulator of σ70D), stationary phase protein (rsd) ,
Outer Membrane Protein Assembly Complex - BamC subunit ,
TonB energy transducing system - TonB subunit ,
SspB ,
Cascade subunit B (casB) ,
TonB energy transducing system - ExbB subunit ,
recombinase, DNA renaturation (recT) ,
essential cell division protein FtsB ,
essential cell division protein FtsL ,
sulfur acceptor for SufS cysteine desulfurase (sufE) ,
HflK-HflC complex; regulator of FtsH protease ,
bifunctional β-cystathionase, PLP-dependent and regulator of maltose regulon (malY) ,
dihydroxyacetone kinase subunit L (dhaL) ,
MalT transcriptional activator ,
α-galactosidase monomer (melA) ,
acetyl esterase (aes) ,
RelB Qin prophage; antitoxin of the RelE-RelB toxin-antitoxin system and DNA binding transcriptional repressor ,
Qin prophage; toxin of the RelE-RelB toxin-antitoxin system and cofactor to enhance the repressor activity of RelB ,
cell division inhibitor, nucleoid occlusion (slmA) ,
thioredoxin 1 (trxA) ,
crRNA endonuclease (casE) ,
branch migration of Holliday structures; repair helicase (ruvB) ,
RecB ,
multifunctional nuclease (cas1) ,
cell division factor ZapC, localizes to the cytokinetic ring ,
KefC ,
cell division factor ZapB ,
cell division factor ZapA, localizes to the cytokinetic ring ,
CP4-57 prophage; antitoxin of the RnlA-RnlB toxin-antitoxin system ,
biotin synthase monomer (bioB) ,
peptidyl-prolyl cis-trans isomerase; in protein folding (fkpA) ,
DNA polymerase III, δ prime subunit (holB) ,
transcription antitermination protein NusB ,
MrcB ,
30S ribosomal subunit protein S7 (rpsG) ,
NrdF ,
flavodoxin involved in dimanganese-tyrosyl radical cofactor maintenance for ribonucleotide reductase (nrdI) ,
RybB small regulatory RNA ,
molecular brake that regulates flagellar motility in response to c-di-GMP (ycgR) ,
MicA small regulatory RNA ,
outer membrane lipopolysaccharide transport and assembly complex - LptD subunit ,
essential cell division protein FtsN ,
ATP-dependent DNA helicase (recQ) ,
essential cell division protein FtsI; penicillin-binding protein 3 ,
GlnK ,
essential cell division protein FtsW; lipid II flippase ,
cell division protein FtsE ,
Pal ,
TolB ,
chaperone protein DnaJ ,
RNA polymerase, sigma 70 (sigma D) factor (rpoD) ,
FnrS small regulatory RNA ,
tRNA threonylcarbamoyladenosine dehydratase (tcdA) ,
ArcZ small regulatory RNA ,
MgrR small regulatory RNA ,
lysogenization regulator (hflD) ,
chaperone for [Fe-S] cluster biosynthesis (hscA) ,
Fe-S cluster assembly, scaffold protein (sufA) ,
DeaD, DEAD-box RNA helicase ,
mRNA interferase, toxin of the MqsR-MqsA toxin-antitoxin system ,
GTPase involved in chromosome partitioning and ribosome assembly (obgE) ,
RyhB small regulatory RNA involved in iron homeostasis ,
SecY-interacting protein (syd) ,
ChiX small regulatory RNA ,
protein involved in threonylcarbamoyladenosine biosynthesis (tsaD) ,
protein involved in threonylcarbamoyladenosine biosynthesis (tsaB) ,
protein involved in threonylcarbamoyladenosine biosynthesis (tsaE) ,
NADH-dependent dihydropyrimidine dehydrogenase subunit (preT) ,
NADH-dependent dihydropyrimidine dehydrogenase subunit (preA) ,
DinJ antitoxin of YafQ-DinJ toxin-antitoxin system and DNA-binding transcriptional repressor ,
inner-membrane protein insertion factor (yidC) ,
anti-sigma factor (rseA) ,
GroEL chaperonin (groL) ,
LamB ,
transmembrane component of cytoskeleton (rodZ) ,
RprA small regulatory RNA ,
copper / silver efflux system - membrane subunit (cusA) ,
copper / silver efflux system - periplasmic binding protein and metallochaperone (cusF) ,
copper / silver efflux system - outer membrane porin (cusC) ,
GTPase that interacts with methylmalonyl-CoA mutase (argK) ,
ScpA ,
OmrB small regulatory RNA ,
OmrA small regulatory RNA ,
formate dehydrogenase formation protein (fdhE) ,
adenylate cyclase (cyaA) ,
CyaR small regulatory RNA ,
SgrS small regulatory RNA ,
peptidyl-prolyl cis-trans isomerase (PPIase) (surA) ,
anti-adaptor protein for σS stabilization (iraP) ,
inhibitor of σS proteolysis (iraM) ,
inhibitor of σS proteolysis (iraD) ,
toxin of the YafQ-DinJ toxin-antitoxin system ,
cysteine sulfinate desulfinase (csdA) ,
predicted anti-terminator regulatory protein (ygcP) ,
Cascade subunit C ,
7-cyano-7-deazaguanine synthase (queC) ,
SufD component of SufBCD Fe-S cluster scaffold complex ,
SufB component of SufBCD Fe-S cluster scaffold complex ,
hydrogenase 4, large subunit (hyfG) ,
ABC transporter with a role in iron homeostasis - ATP-binding subunit (fetA) ,
copper / silver efflux system - membrane fusion protein (cusB) ,
essential cell division protein ZipA ,
endonuclease of nucleotide excision repair (cho) ,
dihydroxyacetone kinase subunit K (dhaK) ,
transcriptional coactivator for CRP (sxy) ,
protein involved in base analog detoxification (ycbX) ,
phosphotransferase system enzyme IIA, regulation of potassium transport (ptsN) ,
hydrogenase 2, small subunit (hybO) ,
adenylate kinase (adk) ,
ADP-L-glycero-D-mannoheptose-6-epimerase (rfaD) ,
predicted Nudix hydrolase (yfcD) ,
fused predicted transporter subunits of ABC superfamily: ATP-binding components (yheS) ,
MlaF ,
GuaC ,
Ca2+-binding protein involved in chromosome partitioning (mukF) ,
CP4-57 prophage; RNase LS, toxin of the RnlAB toxin-antitoxin system ,
LdcC ,
essential cell division protein FtsK ,
predicted peptidase (collagenase-like) (yhbU) ,
outer membrane lipoprotein - activator of PBP1A activity (lpoA) ,
ribosome small subunit-dependent GTPase A (rsgA) ,
universal stress protein UP12 (uspG) ,
sulfite reductase, flavoprotein subunit (cysJ) ,
dTDP-4-dehydrorhamnose 3,5-epimerase (rfbC) ,
bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase (acnB) ,
23S rRNA pseudouridine synthase (rluD) ,
CP4-57 prophage; integrase (intA) ,
periplasmic chaperone, required for type 1 fimbriae (fimC) ,
pantothenate synthetase monomer (panC) ,
molybdopterin synthase large subunit (moaE) ,
molybdopterin synthase small subunit (moaD) ,
DNA polymerase III, δ subunit (holA) ,
flagellar M-ring protein FliF; basal-body MS(membrane and supramembrane)-ring and collar protein ,
GTPase, involved in modification of U34 in tRNA (mnmE) ,
serine/threonine kinase HipA ,
MutL ,
protein involved in chromosome partitioning (mukE) ,
cell division protein involved in chromosome partitioning (mukB) ,
RNase E (rne) ,
SrmB, DEAD-box RNA helicase ,
nitrate reductase Z, α subunit (narZ) ,
DNA helicase IV (helD) ,
PepP ,
uracil-DNA glycosylase (ung) ,
molybdopterin molybdenumtransferase (moeA) ,
nitrate reductase A, β subunit (narH) ,
DNA polymerase III, α subunit (dnaE) ,
LpxB ,
SecA ,
DegP ,
small heat shock protein IbpB ,
small heat shock protein IbpA ,
CSD sulfur transfer protein (csdE) ,
SecY ,
ribulose-5-phosphate 3-epimerase (rpe) ,
glycine betaine / proline ABC transporter - periplasmic binding protein (proX) ,
subunit of E1p component of pyruvate dehydrogenase complex (aceE) ,
NADH:ubiquinone oxidoreductase, membrane subunit K (nuoK) ,
molybdenum cofactor assembly chaperone subunit (δ subunit) of nitrate reductase 1 (narJ) ,
nucleoside triphosphate pyrophosphohydrolase (mazG) ,
periplasmic chaperone (skp) ,
protein disulfide oxidoreductase - DsbAreduced ,
DegS serine endoprotease ,
DNA-cytosine methyltransferase (dcm) ,
MazF toxin of the MazF-MazE toxin-antitoxin system that exhibits ribonuclease activity ,
cell division modulator (cedA) ,
Rac prophage; predicted site-specific recombinase (pinR) ,
outer membrane lipopolysaccharide transport and assembly complex - LptE subunit ,
predicted mono-oxygenase (ydhR) ,
CytR ,
heat shock protein Hsp15 involved in ribosome recycling (hslR) ,
transcriptional dual regulator HU-β, NS1 (HU-1) (hupB) ,
transcriptional dual regulator HU-α (HU-2) (hupA) ,
scaffold protein for iron-sulfur cluster assembly (iscU) ,
glyoxalase I (gloA) ,
glutaredoxin 4 (grxD) ,
fumarate reductase iron-sulfur protein (frdB) ,
succinate:quinone oxidoreductase, FAD binding protein (sdhA) ,
AspA ,
5-formyltetrahydrofolate cyclo-ligase (fau) ,
flagellar motor switch protein FliG ,
MenB ,
DNA polymerase III, θ subunit (holE) ,
ClpA ,
BolA DNA-binding transcriptional dual regulator ,
acetyl-CoA carboxyltransferase, α subunit (accA) ,
regulator of FtsH protease (hflK) ,
regulator of FtsH protease (hflC) ,
ATP synthase F1 complex - beta subunit (atpD) ,
ATP synthase F1 complex - alpha subunit (atpA) ,
endonuclease III; specific for apurinic and/or apyrimidinic sites (nth) ,
fructose bisphosphate aldolase monomer (fbaA) ,
accessory protein for nickel incorporation into hydrogenase isoenzymes (hypB) ,
hydrogenase 2-specific chaperone (hybE) ,
FabF ,
iron-sulfur cluster assembly protein (iscA) ,
16S rRNA pseudouridine 516 synthase (rsuA) ,
PII (glnB) ,
UlaR DNA-binding transcriptional repressor ,
YbhF ,
reduced ferredoxin (fdx) ,
acetyl-CoA carboxyltransferase, β subunit (accD) ,
E3 monomer (lpd) ,
Pta ,
FKBP-type peptidyl prolyl cis-trans isomerase (slyD) ,
signal peptide-binding chaperone for NapA (napD) ,
CadA ,
essential cell division protein FtsZ ,
DnaN ,
cold shock protein CspG ,
OmpW, outer membrane protein ,
outer membrane protein A (ompA) ,
esterase/thioesterase (ybgC) ,
proofreading thioesterase in enterobactin biosynthesis (entH) ,
RNA polymerase, β subunit (rpoB) ,
RNA polymerase, β' subunit (rpoC) ,
methyltransferase for 50S ribosomal subunit protein L11 (prmA) ,
specificity factor for ClpA-ClpP chaperone-protease complex (clpS) ,
threonyl-tRNA synthetase (thrS) ,
predicted protein (yciU) ,
RhlB ,
conserved protein (ybeD) ,
GAP-like protein that activates GTPase activity of Der (yihI) ,
nucleotide binding protein (yajQ) ,
PEP synthetase regulatory protein (ppsR) ,
lipid hydroperoxide peroxidase (tpx) ,
chaperone protein Tig; trigger factor ,
Holliday junction nuclease; resolution of structures; repair (ruvC) ,
30S ribosomal subunit protein S4 (rpsD) ,
30S ribosomal subunit protein S2 (rpsB) ,
30S ribosomal subunit protein S10 (rpsJ) ,
50S ribosomal subunit protein L1 (rplA) ,
50S ribosomal subunit protein L11 (rplK) ,
ssDNA and dsDNA binding, ATP binding (recF) ,
Ndk ,
HtpG monomer ,
chaperone protein DnaK ,
molecular chaperone Hsp33 (hslO) ,
protein involved in modification of U34 in tRNA (mnmG) ,
Eno ,
protein chain elongation factor EF-Ts (tsf) ,
elongation factor Tu (tufA) ,
co-chaperone for [Fe-S] cluster biosynthesis (hscB) ,
peptide deformylase ,
ATPase component of the HslVU protease (hslU) ,
GroES cochaperonin (groS) ,
carbamoyl phosphate synthetase, α chain (carA) ,
cysteine desulfurase monomer (iscS) ,
glutamate synthase, small subunit (gltD) ,
glutamate synthase, large subunit (gltB) ,
nitrate reductase A, α subunit (narG) ,
phenylalanyl-tRNA synthetase α-chain (pheS) ,
PyrF ,
minor fimbrial subunit, D-mannose specific adhesin (fimH) ,
RecC ,
phenylalanyl-tRNA synthetase β-chain (pheT) ,
succinate:quinone oxidoreductase, iron-sulfur cluster binding protein (sdhB) ,
AceF ,
MutH ,
UvrD ,
DNA polymerase III, ε subunit (dnaQ) ,
carbamoyl phosphate synthetase, β chain ,
PhoA ,
fumarate reductase flavoprotein (frdA) ,
membrane anchored periplasmic heme chaperone CcmE ,
protoheme IX ABC transporter - membrane subunit CcmD ,
protoheme IX ABC transporter - membrane subunit CcmC ,
protoheme IX ABC transporter - membrane subunit CcmB ,
protoheme IX ABC transporter - ATP binding subunit (ccmA) ,
ribonuclease E inhibitor protein (rraA)

Unification Links: GO:0005515


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Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 18.5 on Sat Dec 20, 2014, BIOCYC13B.