Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
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Escherichia coli K-12 substr. MG1655 Gene-Ontology-Terms Class: GO:0005515 - protein binding

Synonyms: GO:0045308, protein amino acid binding

Definition: Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

Parent Classes:
GO:0005488 - binding

Child Classes:
GO:0001098 - basal transcription machinery binding (3) ,
GO:0001948 - glycoprotein binding (1) ,
GO:0008092 - cytoskeletal protein binding (2) ,
GO:0008134 - transcription factor binding (18) ,
GO:0019899 - enzyme binding (21) ,
GO:0030674 - protein binding, bridging (2) ,
GO:0031072 - heat shock protein binding (3) ,
GO:0032403 - protein complex binding (2) ,
GO:0032794 - GTPase activating protein binding (1) ,
GO:0032947 - protein complex scaffold (1) ,
GO:0042802 - identical protein binding (390) ,
GO:0043621 - protein self-association (1) ,
GO:0044183 - protein binding involved in protein folding (3) ,
GO:0045152 - antisigma factor binding (1) ,
GO:0046983 - protein dimerization activity (171) ,
GO:0051082 - unfolded protein binding (19) ,
GO:0051087 - chaperone binding (6) ,
GO:0070678 - preprotein binding (1)

Term Members:
Cascade subunit D (casD) ,
Cascade subunit A (casA) ,
RNA polymerase, sigma 32 (sigma H) factor (rpoH) ,
AqpZ ,
cytochrome bd-I terminal oxidase subunit II (cydB) ,
cytochrome bd-I terminal oxidase subunit I (cydA) ,
DLP12 prophage; DNA base-flipping protein (ybcN) ,
fumarate reductase ,
cytochrome bo terminal oxidase subunit III (cyoC) ,
cytochrome bo terminal oxidase subunit IV (cyoD) ,
GTP cyclohydrolase II (ribA) ,
GlpK ,
L-serine deaminase I (sdaA) ,
glutamate decarboxylase A subunit (gadA) ,
serine hydroxymethyltransferase (glyA) ,
50S ribosomal subunit protein L3 (rplC) ,
inner membrane protein associated with the ribosome (yqjD) ,
ribose ABC transporter - putative periplasmic binding protein (rbsB) ,
hyperosmotically inducible periplasmic protein (osmY) ,
elongation factor Tu (tufB) ,
tryptophanase (tnaA) ,
predicted outer membrane lipoprotein (ybaY) ,
osmotically inducible protein OsmE ,
galactose ABC transporter - periplasmic binding protein (mglB) ,
PurA ,
Ppk ,
50S ribosomal subunit protein L4 (rplD) ,
predicted amidotransferase (yafJ) ,
CP4-57 prophage; toxin of the YpjF-YfjZ toxin-antitoxin system ,
MqsA antitoxin of the MqsRA toxin-antitoxin system and DNA-binding transcriptional repressor ,
methionine-oxo-acid transaminase, PLP-dependent (ybdL) ,
outer membrane protein associated with E. coli common pilus formation - cryptic (ecpC) ,
predicted DNA-binding transcriptional regulator (yfaX) ,
predicted DNA-binding transcriptional regulator, LysR-type (yahB) ,
3-phenylpropionate dioxygenase, predicted ferredoxin reductase subunit (hcaD) ,
Qin prophage; predicted protein (flxA) ,
Rac prophage; predicted defective peptidase (rzpR) ,
citrate lyase synthetase (citC) ,
E. coli common pilus chaperone - cryptic (ecpB) ,
conserved protein (ybdM) ,
peptidyl-lysine acetyltransferase (pka) ,
conserved protein (eutQ) ,
aminopeptidase (ypdF) ,
phosphohistidine phosphatase (sixA) ,
acetyl-CoA:acetoacetyl-CoA transferase, β subunit (atoA) ,
lipid kinase (yegS) ,
Ugd ,
predicted sensory kinase in two-component regulatory system with YedW (yedV) ,
predicted protein, C-ter fragment (yedS_3) ,
predicted protein, N-ter fragment (yedS_1) ,
predicted protein, middle fragment (yedS_2) ,
KdgR DNA-binding transcriptional repressor ,
predicted diguanylate cyclase (yeaJ) ,
succinylglutamate desuccinylase (astE) ,
Qin prophage; predicted defective integrase (intQ) ,
predicted peptidase (ydcP) ,
predicted phosphatase, inner membrane protein (ynbD) ,
predicted hydrolase (ynbC) ,
PaaX ,
ring 1,2-phenylacetyl-CoA epoxidase, structural subunit (paaC) ,
Rac prophage; predicted DNA-binding protein (ydaW) ,
protein-lysine deacetylase and desuccinylase (cobB) ,
poly-β-1,6-N-acetyl-D-glucosamine synthase - PgaC subunit ,
fused 23S rRNA m2G2445 methyltransferase and 23S rRNA m7G2069 methyltransferase (rlmL) ,
predicted transferase with NAD(P)-binding Rossmann-fold domain (ybhK) ,
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinone hydroxylase (ubiF) ,
CP4-6 prophage; partial transposase of insertion element IS911A, interrupted by insertion of IS30 element (insO-1) ,
poly-β-1,6-N-acetyl-D-glucosamine synthase - PgaD subunit ,
protein chain initiation factor IF-1 (infA) ,
putative ferredoxin possibly involved in anaerobic carnitine metabolism (fixX) ,
NemR DNA-binding transcriptional repressor ,
CP4-44 prophage; predicted protein (yeeW) ,
predicted protein (yebV) ,
hypothetical protein (ydcY) ,
ClpB chaperone ,
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (ispG) ,
flavodoxin 1 (fldA) ,
50S ribosomal subunit protein L22 (rplV) ,
predicted elecron transfer flavoprotein subunit, ETFP adenine nucleotide-binding domain (fixA) ,
RNA Polymerase (RNAP)-binding ATPase and RNAP recycling factor (hepA) ,
predicted transporter (yggR) ,
biosynthetic peptidoglycan transglycosylase (mtgA) ,
putative protein secretion protein for export (gspE) ,
predicted oxidoreductase (ybdH) ,
RNA chaperone, involved in posttranscriptional control of ProP levels (proQ) ,
fructoselysine 6-kinase (frlD) ,
putative protein secretion protein for export (gspH) ,
predicted pyruvate formate lyase activating enzyme (yjjW) ,
L,D-transpeptidase ErfK ,
predicted fimbrial-like adhesin protein (ybgD) ,
23S rRNA pseudouridine 2605 synthase (rluB) ,
predicted DNA-binding response regulator in two-component regulatory system (yhjB) ,
23S rRNA m2A2503 methyltransferase and tRNA m2A37 methyltransferase (rlmN) ,
CbpA monomer ,
NADH:ubiquinone oxidoreductase, chain G (nuoG) ,
flagellar biosynthesis, hook-filament junction protein 1 (flgK) ,
phosphoribosylglycinamide formyltransferase 2 (purT) ,
conserved protein (yeeD) ,
SdsRQP multidrug efflux transport system - uncharacterised component (mdtO) ,
protein possibly involved in ribosome structure or function (typA) ,
glyoxalase III, Hsp31 molecular chaperone (hchA) ,
predicted electron transfer flavoprotein, NAD/FAD-binding domain and ETFP adenine nucleotide-binding domain-like (fixB) ,
carnitine-CoA ligase (caiC) ,
transcription-repair coupling factor (mfd) ,
ribonuclease II (rnb) ,
LeuD ,
peptidase T ,
[protein-PII] uridylyltransferase (glnD) ,
cobalamin-independent homocysteine transmethylase (metE) ,
meso-diaminopimelic acid-D-alanyl endopeptidase / D-alanyl-D-alanine carboxypeptidase (dacB) ,
flagellar cap protein FliD; filament capping protein; enables filament assembly ,
AccC ,
peptidyl-prolyl cis-trans isomerase B (rotamase B) (ppiB) ,
primosomal replication protein N'' (priC) ,
geranyl diphosphate synthase / farnesyl diphosphate synthase (ispA) ,
pyruvate kinase II monomer (pykA) ,
stationary-phase protein with possible role in p-aminobenzoate or folate biosynthesis (fic) ,
protein involved in processing of HyaA and HyaB proteins (hyaD) ,
MalX PTS permease ,
FhlA transcriptional activator ,
nitrate reductase Z, β subunit (narY) ,
cell division inhibitor of the MinC-MinD-MinE and DicB-MinC systems that regulate septum placement ,
UbiG ,
GlmS ,
NADPH nitroreductase (nfsA) ,
RhsC protein in rhs element ,
PhnG subunit of methylphosphonate degradation complex ,
hydrogenase 3 and formate hydrogenlyase complex, HycG subunit ,
ATP-dependent dsDNA exonuclease (sbcC) ,
RNA polymerase, sigma 24 (sigma E) factor (rpoE) ,
SecG ,
SecD ,
SeqA, negative modulator of initiation of replication ,
regulator of nucleoside diphosphate kinase (rnk) ,
conserved protein (yeiW) ,
YehT ,
SucB ,
subunit of E1(0) component of 2-oxoglutarate dehydrogenase (sucA) ,
NADH:ubiquinone oxidoreductase, chain E (nuoE) ,
NtrC transcriptional dual regulator (glnG) ,
ribonuclease E inhibitor protein B (rraB) ,
Gsk ,
Gss ,
predicted carboxysome structural protein (eutN) ,
DpiA ,
CpxR transcriptional dual regulator ,
CpxA sensory histidine kinase ,
50S ribosomal subunit protein L23 (rplW) ,
branched chain amino acid transporter BrnQ ,
stationary phase translation inhibitor and ribosome stability factor (raiA) ,
predicted protein (yejG) ,
EvgA transcriptional regulator ,
RutR DNA-binding transcriptional dual regulator ,
AcrR DNA-binding transcriptional repressor ,
RbsR DNA-binding transcriptional dual regulator ,
PurR ,
AllR DNA-binding transcriptional repressor ,
GlcC transcriptional dual regulator ,
GlpR DNA-binding transcriptional repressor ,
CRP transcriptional dual regulator ,
Lrp transcriptional dual regulator ,
AsnC ,
H-NS-like DNA-binding protein with RNA chaperone activity (stpA) ,
hydrogenase 1, large subunit (hyaB) ,
glutathione S-transferase B (gstB) ,
stringent starvation protein A (sspA) ,
dihydrofolate reductase ,
cytochrome bo terminal oxidase subunit I (cyoB) ,
citrate synthase monomer (gltA) ,
biotin carboxyl carrier protein (accB) ,
ATP synthase F1 complex - gamma subunit (atpG) ,
predicted oxidoreductase (ybjN) ,
LexA-regulated protein (ybfE) ,
ATP binding protein SapF of predicted ABC transporter ,
putative ATP-binding component of a transport system (ybiT) ,
thioredoxin reductase monomer (trxB) ,
pyruvate formate-lyase activating enzyme (pflA) ,
MntR ,
AraC ,
site-specific tyrosine recombinase (xerC) ,
exonuclease VII, small subunit (xseB) ,
DNA repair; excision nuclease subunit B (uvrB) ,
conserved protein (yacL) ,
conserved protein (ycfP) ,
conserved protein (yaiI) ,
ribosome maturation protein (rimP) ,
triose phosphate isomerase monomer (tpiA) ,
predicted DNA-binding transcriptional regulator of maltose metabolism (sfsA) ,
ribosome recycling factor (frr) ,
30S ribosomal subunit protein S5 (rpsE) ,
30S ribosomal subunit protein S18 (rpsR) ,
30S ribosomal subunit protein S12 (rpsL) ,
50S ribosomal subunit protein L32 (rpmF) ,
50S ribosomal subunit protein L28 (rpmB) ,
50S ribosomal subunit protein L27 (rpmA) ,
NikR DNA-binding transcriptional repressor, Ni-binding ,
Fis ,
ATP synthase F1 complex - epsilon subunit (atpC) ,
ArgG ,
LeuC ,
excision nuclease subunit A (uvrA) ,
PflB ,
e14 prophage; predicted tail fiber assembly protein (tfaE) ,
UDP-glucose 4-epimerase monomer (galE) ,
8-oxo-dGTP diphosphatase (mutT) ,
3-dehydroquinate synthase (aroB) ,
lysophospholipase L(2) (pldB) ,
HisB ,
Ada DNA-binding transcriptional dual regulator ,
L-tartrate dehydratase, α subunit (ttdA) ,
protein used in recombination and DNA repair (recN) ,
Trg ,
exonuclease VII, large subunit (xseA) ,
ribose ABC transporter - putative ATP binding subunit (rbsA) ,
3-deoxy-D-manno-octulosonate cytidylyltransferase (kdsB) ,
50S ribosomal subunit protein L15 (rplO) ,
30S ribosomal subunit protein S6 (rpsF) ,
glycyl-tRNA synthetase, β subunit (glyS) ,
glycyl-tRNA synthetase, α subunit (glyQ) ,
methionyl-tRNA synthetase (metG) ,
mannose-6-phosphate isomerase (manA) ,
AroH ,
LysA ,
ferredoxin-type protein (napF) ,
RalA antitoxin of the RalRA toxin-antitoxin system ,
regulatory protein RecX; inhibitor of RecA ,
chitobiose PTS permease - ChbB subunit ,
chitobiose PTS permease - ChbA subunit ,
O-acetylserine sulfhydrylase A (cysK) ,
ribosome-associated ATPase (rbbA) ,
cell division factor ZapE with ATPase activity ,
ribosomal protein-arginine oxygenase (roxA) ,
peptidyl-prolyl cis-trans isomerase (fkpB) ,
molybdenum cofactor cytidylyltransferase (mocA) ,
molybdenum cofactor insertion chaperone for PaoABC (paoD) ,
RydC small regulatory RNA ,
stimulator of RavA ATPase activity (viaA) ,
flap endonuclease (ygdG) ,
SufC component of SufBCD Fe-S cluster scaffold complex ,
LolE ,
TatB ,
TatC ,
cytochrome c-type biogenesis protein (ccmF) ,
formate dehydrogenase-O, α subunit (fdoG) ,
L-methionine / D-methionine ABC transporter - membrane subunit (metI) ,
L-methionine / D-methionine ABC transporter - ATP binding subunit (metN) ,
ATP-dependent helicase (dinG) ,
glycine betaine / proline ABC transporter - membrane subunit (proW) ,
glycine betaine / proline ABC transporter - ATP binding subunit (proV) ,
BglG transcriptional antiterminator (monomer) ,
ssDNA-binding protein (ssb) ,
transcription termination factor Rho monomer; polarity suppressor ,
modulator of Rho-dependent transcription termination (rof) ,
transcription termination factor NusG ,
octaprenyl diphosphate synthase (ispB) ,
H-NS DNA-binding transcriptional dual regulator (hns) ,
CcmH ,
HPr (ptsH) ,
Lon ,
methionine adenosyltransferase (metK) ,
RNA-binding protein that affects many cellular processes; homolog of mammalian Sm/Sm-like proteins (hfq) ,
protein disulfide oxidoreductase - DsbBreduced ,
PtsI ,
vitamin B12 ABC transporter - ATP binding subunit (btuD) ,
vitamin B12 ABC transporter - membrane subunit (btuC) ,
K+ transporting ATPase - KdpC subunit ,
K+ transporting ATPase - ATP binding subunit (kdpB) ,
toxin of the YoeB-YefM toxin-antitoxin pair ,
nucleoid-associated protein (yejK) ,
regulator of RpoS (rssB) ,
RfaH transcriptional antiterminator ,
Spot 42 small regulatory RNA (spf) ,
fermentation/respiration switch protein (frsA) ,
negative feedback regulator of the PhoQP system (mgrB) ,
anaerobic glycerol-3-phosphate dehydrogenase subunit A (glpA) ,
MlrA DNA binding transcriptional activator ,
diguanylate cyclase (ydaM) ,
cyclic di-GMP phosphodiesterase (gmr) ,
acetohydroxy acid synthase I, small subunit (ilvN) ,
acetohydroxy acid synthase I, large subunit (ilvB) ,
molybdopterin-guanine dinucleotide biosynthesis adaptor protein (mobB) ,
RNA polymerase holoenzyme assembly factor Crl ,
tyrosine lyase (thiH) ,
sulfate adenylyltransferase, CysD subunit ,
sulfate adenylyltransferase, CysN subunit ,
outer membrane lipoprotein - activator of PBP1B activity (lpoB) ,
PriB ,
sulfite reductase, hemoprotein subunit (cysI) ,
ThiG ,
ThiS adenylyltransferase (thiF) ,
OxyS small regulatory RNA ,
mannose PTS permease - ManX subunit ,
DNA polymerase IV (Y-family DNA polymerase; translesion DNA synthesis) (dinB) ,
oxidoreductase subunit (ynfF) ,
oxidoreductase subunit (ynfE) ,
N-acetylmuramic acid 6-phosphate etherase (murQ) ,
2-keto-3-deoxy-L-rhamnonate aldolase (yfaU) ,
MdtABC-TolC multidrug efflux system - membrane subunit (mdtC) ,
MdtABC-TolC multidrug efflux system - membrane subunit (mdtB) ,
Mlc titration factor (mtfA) ,
MacAB-TolC macrolide efflux transport system - membrane subunit (macB) ,
MacAB-TolC macrolide efflux transport system - membrane fusion protein ,
regulator of DnaA that prevents premature reinitiation of DNA replication (hda) ,
murein lipoprotein (lpp) ,
50S ribosomal subunit protein L2 (rplB) ,
inner membrane protein that interacts with cell division proteins (ymgF) ,
RstA transcriptional regulator ,
Mlc DNA-binding transcriptional repressor ,
MzrA ,
TorS monomer ,
BglJ DNA-binding transcriptional regulator ,
chaperone protein for trimethylamine-N-oxide oxidoreductase I (torD) ,
large subunit of periplasmic nitrate reductase, molybdoprotein (napA) ,
TorC trimethylamine N-oxide reductase, cytochrome c-type subunit ,
trimethylamine N-oxide reductase, catalytic subunit (torA) ,
AidB ,
MarR transcriptional repressor ,
GalS DNA-binding transcriptional dual regulator ,
formate dehydrogenase N, α subunit (fdnG) ,
KdpE transcriptional activator ,
KdpD ,
TolA ,
NarW, probable private chaperone for NarZ nitrate reductase subunit ,
primosome factor N' (priA) ,
SecB ,
guanosine 3'-diphosphate 5'-triphosphate 3'-diphosphatase [multifunctional] (spoT) ,
SOS mutagenesis; error-prone repair; processed to UmuD'; forms complex with UmuC ,
SOS cell division inhibitor (sulA) ,
transcription termination/antitermination L factor (nusA) ,
EnvZ ,
chromosome replication; initiation and chain elongation (dnaC) ,
chemotaxis regulator transmitting signal to flagellar motor component (cheY) ,
LptC ,
LptA ,
EntB monomer ,
DnaB ,
cell division protein FtsX ,
tonB energy transducing system - ExbD subunit ,
stationary phase nucleoid protein that sequesters iron and protects DNA from damage (dps) ,
DNA primase (dnaG) ,
pyridine nucleotide transhydrogenase, β subunit (pntB) ,
ArcA transcriptional dual regulator ,
CheZ ,
Outer Membrane Protein Assembly Complex - BamA subunit ,
primosomal protein DnaT ,
RNA polymerase, α subunit (rpoA) ,
DNA strand exchange and recombination protein with protease and nuclease activity (recA) ,
rep ,
DNA mismatch endonuclease of the very short patch (VSP) mismatch repair pathway (vsr) ,
CheA ,
pyridine nucleotide transhydrogenase, α subunit (pntA) ,
OmpC ,
DNA polymerase III, τ subunit (dnaX) ,
essential cell division protein FtsQ ,
ferric enterobactin / colicin B / colicin D outer membrane porin FepA ,
SOS mutagenesis and repair (umuC) ,
GalR DNA-binding transcriptional dual regulator ,
chromosomal replication initiator protein DnaA; DNA-binding transcriptional dual regulator ,
maltose ABC transporter - membrane subunit (malF) ,
glutamate-1-semialdehyde aminotransferase (hemL) ,
HemA ,
iron-sulfur cluster scaffold protein (nfuA) ,
isopentenyl-adenosine A37 tRNA methylthiolase (miaB) ,
NADH:ubiquinone oxidoreductase, chain CD (nuoC) ,
NAD(P)H-dependent FMN reductase (ssuE) ,
flagellar biosynthesis protein FliT ,
flagellar biosynthesis protein FlgN ,
H-NS- and StpA-binding protein (cnu) ,
GlmZ small regulatory RNA ,
GlmY small regulatory RNA ,
RNase adaptor protein (rapZ) ,
predicted 5-keto 4-deoxyuronate isomerase monomer (kduI) ,
cell division protein DamX ,
ribosome maturation protein (rimM) ,
AcrAB-TolC multidrug efflux system - permease subunit (acrB) ,
UDP-N-acetylmuramate-alanine ligase (murC) ,
hydrogenase 3, large subunit (hycE) ,
small membrane protein that interacts with the AcrAB-TolC multidrug efflux pump (acrZ) ,
sulfur transfer protein (tusA) ,
L-cysteine desulfurase (sufS) ,
RNase R (rnr) ,
maturation factor for PanD (panZ) ,
ribosome-binding ATPase, inhibitor of catalase activity (ychF) ,
predicted 2,3-dehydroadipyl-CoA hydratase (paaF) ,
predicted ring 1,2-epoxyphenylacetyl-CoA isomerase (oxepin-CoA forming) (paaG) ,
HypC, protein involved in hydrogenase 3 maturation ,
Ppa ,
Outer Membrane Protein Assembly Complex - BamB subunit ,
acetaldehyde dehydrogenase 2 (mhpF) ,
aldehyde dehydrogenase: molybdenum cofactor-binding subunit (paoC) ,
aldehyde dehydrogenase, FAD-binding subunit (paoB) ,
aldehyde dehydrogenase, Fe-S subunit (paoA) ,
DMS reductase maturation protein (dmsD) ,
4-hydroxy-2-ketovalerate aldolase (mhpE) ,
ribonucleoside hydrolase 1 (pyrimidine-specific) (rihA) ,
dimethyl sulfoxide reductase, chain A (dmsA) ,
MreC ,
NtrB (glnL) ,
Outer Membrane Protein Assembly Complex - BamD subunit ,
MreD ,
MreB ,
Outer Membrane Protein Assembly Complex - BamE subunit ,
small noncoding RNA involved in nucleoid organization (nc1) ,
β-lactam resistance protein (blr) ,
diguanylate cyclase (dosC) ,
c-di-GMP phosphodiesterase, heme-regulated (dosP) ,
50S ribosomal subunit protein L14 (rplN) ,
ribosomal silencing factor (rsfS) ,
bacterioferritin-associated ferredoxin (bfd) ,
RelB-antitoxin and DNA-binding transcriptional repressor ,
essential cell division protein FtsA ,
prophage excisionase and response regulator inhibitor (torI) ,
macrodomain Ter protein (matP) ,
DnaA initiator-associating factor for replication initiation (diaA) ,
Hsc62, Hsp70 family chaperone, binds to RpoD and inhibits transcription (hscC) ,
CP4-44 prophage; antitoxin of the CbtA-CbeA toxin-antitoxin system ,
cell division factor ZapD ,
regulator of iron-sulfur cluster assembly (iscX) ,
hydrogenase 2 accessory protein (hybG) ,
RNA polymerase, ω subunit (rpoZ) ,
haemolysin expression modulating protein (hha) ,
alkyl hydroperoxide reductase, AhpC component ,
HypD, scaffold protein for assembly of the Fe-(CN)2CO cofactor ,
accessory protein for nickel incorporation into hydrogenase 3 (hypA) ,
alkanesulfonate monooxygenase, FMNH2-dependent (ssuD) ,
MicF small regulatory RNA ,
peptidyl-prolyl cis-trans isomerase C (rotamase C) (ppiC) ,
McaS small regulatory RNA ,
toxin of the CptA-CptB toxin-antitoxin system ,
protein chain initiation factor IF2 (infB) ,
regulatory ATPase (ravA) ,
DNA polymerase III, χ subunit (holC) ,
DNA polymerase III, ψ subunit (holD) ,
ecotin monomer; serine protease inhibitor ,
topoisomerase IV subunit A (parC) ,
membrane ATPase of the MinC-MinD-MinE system that regulates septum placement ,
maltose ABC transporter - periplasmic binding protein (malE) ,
cell division topological specificity factor and inhibitory component of the MinC-MinD-MinE system that regulates septum placement ,
polynucleotide phosphorylase monomer (pnp) ,
zinc-binding phosphatase (ycdX) ,
protein involved in maturation of YcdX (ycdY) ,
MazE antitoxin of the MazF-MazE toxin-antitoxin system ,
chaperone modulator protein CbpM ,
molybdenum cofactor guanylyltransferase (mobA) ,
flagellar motor switch protein FliN ,
succinyl-CoA synthetase, α subunit (sucD) ,
DNA gyrase, subunit B (gyrB) ,
DNA gyrase, subunit A ,
RNA polymerase, sigma 28 (sigma F) factor (fliA) ,
anti-sigma factor for FliA (σ28) (flgM) ,
CheW ,
succinyl-CoA synthetase, β subunit ,
aspartate carbamoyltransferase, PyrI subunit ,
peptidase component of the HslVU protease ,
glycerol-3-phosphate acyltransferase (plsB) ,
aspartate carbamoyltransferase, PyrB subunit ,
protein chain initiation factor IF-3 (infC) ,
apo-[acyl carrier protein] (acpP) ,
Tar ,
flagellar motor switch protein FliM ,
peptidoglycan synthetase; penicillin-binding protein 1A (mrcA) ,
CP4-44 prophage; toxin of the CbtA-CbeA toxin-antitoxin system ,
rseB ,
regulator of σ70D), stationary phase protein (rsd) ,
Outer Membrane Protein Assembly Complex - BamC subunit ,
TonB energy transducing system - TonB subunit ,
SspB ,
Cascade subunit B (casB) ,
TonB energy transducing system - ExbB subunit ,
recombinase, DNA renaturation (recT) ,
essential cell division protein FtsB ,
essential cell division protein FtsL ,
sulfur acceptor for SufS cysteine desulfurase (sufE) ,
HflK-HflC complex; regulator of FtsH protease ,
bifunctional β-cystathionase, PLP-dependent and regulator of maltose regulon (malY) ,
dihydroxyacetone kinase subunit L (dhaL) ,
MalT transcriptional activator ,
α-galactosidase monomer (melA) ,
acetyl esterase (aes) ,
RelB Qin prophage; antitoxin of the RelE-RelB toxin-antitoxin system and DNA binding transcriptional repressor ,
Qin prophage; toxin of the RelE-RelB toxin-antitoxin system and cofactor to enhance the repressor activity of RelB ,
cell division inhibitor, nucleoid occlusion (slmA) ,
thioredoxin 1 (trxA) ,
crRNA endonuclease (casE) ,
branch migration of Holliday structures; repair helicase (ruvB) ,
RecB ,
multifunctional nuclease (cas1) ,
cell division factor ZapC, localizes to the cytokinetic ring ,
KefC ,
cell division factor ZapB ,
cell division factor ZapA, localizes to the cytokinetic ring ,
CP4-57 prophage; antitoxin of the RnlA-RnlB toxin-antitoxin system ,
biotin synthase monomer (bioB) ,
peptidyl-prolyl cis-trans isomerase; in protein folding (fkpA) ,
DNA polymerase III, δ prime subunit (holB) ,
transcription antitermination protein NusB ,
MrcB ,
30S ribosomal subunit protein S7 (rpsG) ,
NrdF ,
flavodoxin involved in dimanganese-tyrosyl radical cofactor maintenance for ribonucleotide reductase (nrdI) ,
RybB small regulatory RNA ,
molecular brake that regulates flagellar motility in response to c-di-GMP (ycgR) ,
MicA small regulatory RNA ,
outer membrane lipopolysaccharide transport and assembly complex - LptD subunit ,
essential cell division protein FtsN ,
ATP-dependent DNA helicase (recQ) ,
essential cell division protein FtsI; penicillin-binding protein 3 ,
GlnK ,
essential cell division protein FtsW; lipid II flippase ,
cell division protein FtsE ,
Pal ,
TolB ,
chaperone protein DnaJ ,
RNA polymerase, sigma 70 (sigma D) factor (rpoD) ,
FnrS small regulatory RNA ,
tRNA threonylcarbamoyladenosine dehydratase (tcdA) ,
ArcZ small regulatory RNA ,
MgrR small regulatory RNA ,
lysogenization regulator (hflD) ,
chaperone for [Fe-S] cluster biosynthesis (hscA) ,
Fe-S cluster assembly, scaffold protein (sufA) ,
DeaD, DEAD-box RNA helicase ,
mRNA interferase, toxin of the MqsR-MqsA toxin-antitoxin system ,
GTPase involved in chromosome partitioning and ribosome assembly (obgE) ,
RyhB small regulatory RNA involved in iron homeostasis ,
SecY-interacting protein (syd) ,
ChiX small regulatory RNA ,
protein involved in threonylcarbamoyladenosine biosynthesis (tsaD) ,
protein involved in threonylcarbamoyladenosine biosynthesis (tsaB) ,
protein involved in threonylcarbamoyladenosine biosynthesis (tsaE) ,
NADH-dependent dihydropyrimidine dehydrogenase subunit (preT) ,
NADH-dependent dihydropyrimidine dehydrogenase subunit (preA) ,
DinJ antitoxin of YafQ-DinJ toxin-antitoxin system and DNA-binding transcriptional repressor ,
inner-membrane protein insertion factor (yidC) ,
anti-sigma factor (rseA) ,
GroEL chaperonin (groL) ,
LamB ,
transmembrane component of cytoskeleton (rodZ) ,
RprA small regulatory RNA ,
copper / silver efflux system - membrane subunit (cusA) ,
copper / silver efflux system - periplasmic binding protein and metallochaperone (cusF) ,
copper / silver efflux system - outer membrane porin (cusC) ,
GTPase that interacts with methylmalonyl-CoA mutase (argK) ,
ScpA ,
OmrB small regulatory RNA ,
OmrA small regulatory RNA ,
formate dehydrogenase formation protein (fdhE) ,
adenylate cyclase (cyaA) ,
CyaR small regulatory RNA ,
SgrS small regulatory RNA ,
peptidyl-prolyl cis-trans isomerase (PPIase) (surA) ,
anti-adaptor protein for σS stabilization (iraP) ,
inhibitor of σS proteolysis (iraM) ,
inhibitor of σS proteolysis (iraD) ,
toxin of the YafQ-DinJ toxin-antitoxin system ,
cysteine sulfinate desulfinase (csdA) ,
predicted anti-terminator regulatory protein (ygcP) ,
Cascade subunit C ,
7-cyano-7-deazaguanine synthase (queC) ,
SufD component of SufBCD Fe-S cluster scaffold complex ,
SufB component of SufBCD Fe-S cluster scaffold complex ,
hydrogenase 4, large subunit (hyfG) ,
ABC transporter with a role in iron homeostasis - ATP-binding subunit (fetA) ,
copper / silver efflux system - membrane fusion protein (cusB) ,
essential cell division protein ZipA ,
endonuclease of nucleotide excision repair (cho) ,
dihydroxyacetone kinase subunit K (dhaK) ,
transcriptional coactivator for CRP (sxy) ,
protein involved in base analog detoxification (ycbX) ,
phosphotransferase system enzyme IIA, regulation of potassium transport (ptsN) ,
hydrogenase 2, small subunit (hybO) ,
adenylate kinase (adk) ,
ADP-L-glycero-D-mannoheptose-6-epimerase (rfaD) ,
predicted Nudix hydrolase (yfcD) ,
fused predicted transporter subunits of ABC superfamily: ATP-binding components (yheS) ,
MlaF ,
GuaC ,
Ca2+-binding protein involved in chromosome partitioning (mukF) ,
CP4-57 prophage; RNase LS, toxin of the RnlAB toxin-antitoxin system ,
LdcC ,
essential cell division protein FtsK ,
predicted peptidase (collagenase-like) (yhbU) ,
outer membrane lipoprotein - activator of PBP1A activity (lpoA) ,
ribosome small subunit-dependent GTPase A (rsgA) ,
universal stress protein UP12 (uspG) ,
sulfite reductase, flavoprotein subunit (cysJ) ,
dTDP-4-dehydrorhamnose 3,5-epimerase (rfbC) ,
bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase (acnB) ,
23S rRNA pseudouridine synthase (rluD) ,
CP4-57 prophage; integrase (intA) ,
periplasmic chaperone, required for type 1 fimbriae (fimC) ,
pantothenate synthetase monomer (panC) ,
molybdopterin synthase large subunit (moaE) ,
molybdopterin synthase small subunit (moaD) ,
DNA polymerase III, δ subunit (holA) ,
flagellar M-ring protein FliF; basal-body MS(membrane and supramembrane)-ring and collar protein ,
GTPase, involved in modification of U34 in tRNA (mnmE) ,
serine/threonine kinase HipA ,
MutL ,
protein involved in chromosome partitioning (mukE) ,
cell division protein involved in chromosome partitioning (mukB) ,
RNase E (rne) ,
SrmB, DEAD-box RNA helicase ,
nitrate reductase Z, α subunit (narZ) ,
DNA helicase IV (helD) ,
PepP ,
uracil-DNA glycosylase (ung) ,
molybdopterin molybdenumtransferase (moeA) ,
nitrate reductase A, β subunit (narH) ,
DNA polymerase III, α subunit (dnaE) ,
LpxB ,
SecA ,
DegP ,
small heat shock protein IbpB ,
small heat shock protein IbpA ,
CSD sulfur transfer protein (csdE) ,
SecY ,
ribulose-5-phosphate 3-epimerase (rpe) ,
glycine betaine / proline ABC transporter - periplasmic binding protein (proX) ,
subunit of E1p component of pyruvate dehydrogenase complex (aceE) ,
NADH:ubiquinone oxidoreductase, membrane subunit K (nuoK) ,
molybdenum cofactor assembly chaperone subunit (δ subunit) of nitrate reductase 1 (narJ) ,
nucleoside triphosphate pyrophosphohydrolase (mazG) ,
periplasmic chaperone (skp) ,
protein disulfide oxidoreductase - DsbAreduced ,
DegS serine endoprotease ,
DNA-cytosine methyltransferase (dcm) ,
MazF toxin of the MazF-MazE toxin-antitoxin system that exhibits ribonuclease activity ,
cell division modulator (cedA) ,
Rac prophage; predicted site-specific recombinase (pinR) ,
outer membrane lipopolysaccharide transport and assembly complex - LptE subunit ,
predicted mono-oxygenase (ydhR) ,
CytR ,
heat shock protein Hsp15 involved in ribosome recycling (hslR) ,
transcriptional dual regulator HU-β, NS1 (HU-1) (hupB) ,
transcriptional dual regulator HU-α (HU-2) (hupA) ,
scaffold protein for iron-sulfur cluster assembly (iscU) ,
glyoxalase I (gloA) ,
glutaredoxin 4 (grxD) ,
fumarate reductase iron-sulfur protein (frdB) ,
succinate:quinone oxidoreductase, FAD binding protein (sdhA) ,
AspA ,
5-formyltetrahydrofolate cyclo-ligase (fau) ,
flagellar motor switch protein FliG ,
MenB ,
DNA polymerase III, θ subunit (holE) ,
ClpA ,
BolA DNA-binding transcriptional dual regulator ,
acetyl-CoA carboxyltransferase, α subunit (accA) ,
regulator of FtsH protease (hflK) ,
regulator of FtsH protease (hflC) ,
ATP synthase F1 complex - beta subunit (atpD) ,
ATP synthase F1 complex - alpha subunit (atpA) ,
endonuclease III; specific for apurinic and/or apyrimidinic sites (nth) ,
fructose bisphosphate aldolase monomer (fbaA) ,
accessory protein for nickel incorporation into hydrogenase isoenzymes (hypB) ,
hydrogenase 2-specific chaperone (hybE) ,
FabF ,
iron-sulfur cluster assembly protein (iscA) ,
16S rRNA pseudouridine 516 synthase (rsuA) ,
PII (glnB) ,
UlaR DNA-binding transcriptional repressor ,
YbhF ,
reduced ferredoxin (fdx) ,
acetyl-CoA carboxyltransferase, β subunit (accD) ,
E3 monomer (lpd) ,
Pta ,
FKBP-type peptidyl prolyl cis-trans isomerase (slyD) ,
signal peptide-binding chaperone for NapA (napD) ,
CadA ,
essential cell division protein FtsZ ,
DnaN ,
cold shock protein CspG ,
OmpW, outer membrane protein ,
outer membrane protein A (ompA) ,
esterase/thioesterase (ybgC) ,
proofreading thioesterase in enterobactin biosynthesis (entH) ,
RNA polymerase, β subunit (rpoB) ,
RNA polymerase, β' subunit (rpoC) ,
methyltransferase for 50S ribosomal subunit protein L11 (prmA) ,
specificity factor for ClpA-ClpP chaperone-protease complex (clpS) ,
threonyl-tRNA synthetase (thrS) ,
predicted protein (yciU) ,
RhlB ,
conserved protein (ybeD) ,
GAP-like protein that activates GTPase activity of Der (yihI) ,
nucleotide binding protein (yajQ) ,
PEP synthetase regulatory protein (ppsR) ,
lipid hydroperoxide peroxidase (tpx) ,
chaperone protein Tig; trigger factor ,
Holliday junction nuclease; resolution of structures; repair (ruvC) ,
30S ribosomal subunit protein S4 (rpsD) ,
30S ribosomal subunit protein S2 (rpsB) ,
30S ribosomal subunit protein S10 (rpsJ) ,
50S ribosomal subunit protein L1 (rplA) ,
50S ribosomal subunit protein L11 (rplK) ,
ssDNA and dsDNA binding, ATP binding (recF) ,
Ndk ,
HtpG monomer ,
chaperone protein DnaK ,
molecular chaperone Hsp33 (hslO) ,
protein involved in modification of U34 in tRNA (mnmG) ,
Eno ,
protein chain elongation factor EF-Ts (tsf) ,
elongation factor Tu (tufA) ,
co-chaperone for [Fe-S] cluster biosynthesis (hscB) ,
peptide deformylase ,
ATPase component of the HslVU protease (hslU) ,
GroES cochaperonin (groS) ,
carbamoyl phosphate synthetase, α chain (carA) ,
cysteine desulfurase monomer (iscS) ,
glutamate synthase, small subunit (gltD) ,
glutamate synthase, large subunit (gltB) ,
nitrate reductase A, α subunit (narG) ,
phenylalanyl-tRNA synthetase α-chain (pheS) ,
PyrF ,
minor fimbrial subunit, D-mannose specific adhesin (fimH) ,
RecC ,
phenylalanyl-tRNA synthetase β-chain (pheT) ,
succinate:quinone oxidoreductase, iron-sulfur cluster binding protein (sdhB) ,
AceF ,
MutH ,
UvrD ,
DNA polymerase III, ε subunit (dnaQ) ,
carbamoyl phosphate synthetase, β chain ,
PhoA ,
fumarate reductase flavoprotein (frdA) ,
membrane anchored periplasmic heme chaperone CcmE ,
protoheme IX ABC transporter - membrane subunit CcmD ,
protoheme IX ABC transporter - membrane subunit CcmC ,
protoheme IX ABC transporter - membrane subunit CcmB ,
protoheme IX ABC transporter - ATP binding subunit (ccmA) ,
ribonuclease E inhibitor protein (rraA)

Unification Links: GO:0005515


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Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 18.5 on Mon Nov 24, 2014, biocyc13.