Metabolic Modeling Tutorial
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Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
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for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
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Escherichia coli K-12 substr. MG1655 Gene-Ontology-Terms Class: GO:0006351 - transcription, DNA-templated

Synonyms: GO:0006350, GO:0061018, GO:0061022, cellular transcription, DNA-dependent, DNA-dependent transcription, transcription, DNA-dependent

Definition: The cellular synthesis of RNA on a template of DNA.

Parent Classes:
GO:0032774 - RNA biosynthetic process ,
GO:0034645 - cellular macromolecule biosynthetic process

Child Classes:
GO:0001121 - transcription from bacterial-type RNA polymerase promoter (3)

Parts:
GO:0006354 - DNA-templated transcription, elongation (3) ,
GO:0006352 - DNA-templated transcription, initiation (11) ,
GO:0006353 - DNA-templated transcription, termination (6) ,
GO:0006355 - regulation of transcription, DNA-templated (424)

Term Members:
MraZ DNA-binding transcriptional repressor ,
negative feedback regulator of the PhoQP system (mgrB) ,
rseB ,
anti-sigma factor (rseA) ,
haemolysin expression modulating protein (hha) ,
antitoxin of the YafO-YafN toxin-antitoxin system ,
DinJ antitoxin of YafQ-DinJ toxin-antitoxin system and DNA-binding transcriptional repressor ,
HcaR transcriptional dual regulator ,
FeaR DNA-binding transcriptional activator ,
Nac DNA-binding transcriptional dual regulator ,
MqsA antitoxin of the MqsRA toxin-antitoxin system and DNA-binding transcriptional repressor ,
prophage excisionase and response regulator inhibitor (torI) ,
AtoC transcriptional activator; Az protein inhibitor of ODC ,
PrpR DNA-binding transcriptional dual regulator ,
KdgR DNA-binding transcriptional repressor ,
DmlR DNA-binding transcriptional regulator ,
anti-FlhDC factor (ydiV) ,
McbR DNA-binding transcriptional dual regulator ,
BluR DNA-binding transcriptional repressor ,
ComR DNA-binding transcriptional repressor ,
HyfR DNA-binding transcriptional activator ,
YefM antitoxin of the YoeB-YefM toxin-antitoxin pair and DNA binding transcriptional repressor ,
BaeR transcriptional regulator ,
antitoxin of the HigB-HigA toxin-antitoxin system ,
NemR DNA-binding transcriptional repressor ,
YhaV toxic endonuclease ,
RcnR DNA-binding transcriptional repressor ,
GadE DNA-binding transcriptional activator ,
CsgD DNA-binding transcriptional dual regulator ,
Dan (ttdR) ,
BglJ DNA-binding transcriptional regulator ,
TorR ,
RtcR DNA-binding transcriptional activator ,
YiaJ DNA-binding transcriptional repressor ,
CdaR DNA-binding transcriptional activator ,
TreR transcriptional repressor ,
AlpA DNA-binding transcriptional activator; CP4-57 prophage ,
AdiY DNA-binding transcriptional activator ,
NarP ,
BasR transcriptional regulator ,
transcription elongation factor GreB ,
MarR transcriptional repressor ,
GalS DNA-binding transcriptional dual regulator ,
RNA polymerase holoenzyme assembly factor Crl ,
XapR transcriptional activator ,
KdpE transcriptional activator ,
MalI DNA-binding transcriptional repressor ,
BetI DNA-binding transcriptional repressor ,
ChbR DNA-binding transcriptional dual regulator ,
IclR transcriptional repressor ,
PrlF antitoxin ,
GutR DNA-binding transcriptional repressor (srlR) ,
GutM DNA-binding transcriptional activator ,
MngR ,
RNA polymerase, sigma S (sigma 38) factor (rpoS) ,
TdcR DNA-binding transcriptional activator ,
LeuO DNA-binding transcriptional dual regulator ,
RNA polymerase, sigma 24 (sigma E) factor (rpoE) ,
UhpA transcriptional activator ,
regulator of σ70D), stationary phase protein (rsd) ,
RfaH transcriptional antiterminator ,
YehT ,
PhoB transcriptional dual regulator ,
transcription termination factor NusG ,
transcription termination/antitermination L factor (nusA) ,
NsrR ,
NarL ,
NagC DNA-binding transcriptional dual regulator ,
MtlR DNA-binding transcriptional repressor ,
CpxR transcriptional dual regulator ,
CusR ,
EvgA transcriptional regulator ,
FabR DNA-binding transcriptional repressor ,
RutR DNA-binding transcriptional dual regulator ,
EnvR DNA-binding transcriptional repressor ,
AlsR DNA-binding transcriptional repressor (rpiR) ,
ZntR transcriptional activator ,
AllS transcriptional activator ,
TdcA DNA-binding transcriptional activator ,
OxyR DNA-binding transcriptional dual regulator ,
GntR DNA-binding transcriptional repressor ,
Cra DNA-binding transcriptional dual regulator ,
CytR ,
AllR DNA-binding transcriptional repressor ,
PdhR DNA-binding transcriptional dual regulator ,
LldR transcriptional repressor ,
GlcC transcriptional dual regulator ,
ExuR DNA-binding transcriptional repressor ,
GlpR DNA-binding transcriptional repressor ,
DeoR DNA-binding transcriptional repressor ,
AgaR DNA-binding transcriptional repressor ,
Lrp transcriptional dual regulator ,
AsnC ,
XylR transcriptional activator ,
MelR DNA-binding transcriptional dual regulator ,
MarA DNA-binding transcriptional dual regulator ,
regulator protein (frmR) ,
stress protein, member of the CspA family (cspC) ,
ArcA transcriptional dual regulator ,
NhaR transcriptional activator ,
MetR ,
MntR ,
FNR ,
SoxS DNA-binding transcriptional dual regulator ,
transcription antiterminator and regulator of RNA stability (cspE) ,
ArgP transcriptional activator ,
HdfR DNA-binding transcriptional dual regulator ,
NrdR ,
TrpR ,
30S ribosomal subunit protein S4 (rpsD) ,
NikR DNA-binding transcriptional repressor, Ni-binding ,
transcription elongation factor GreA ,
Fis ,
ArgR ,
RhaS ,
TyrR DNA-binding transcriptional dual regulator ,
SdiA DNA-binding transcriptional dual regulator ,
EbgR DNA-binding transcriptional repressor ,
AppY DNA-binding transcriptional activator ,
chromosomal replication initiator protein DnaA; DNA-binding transcriptional dual regulator ,
predicted protein (ygeL) ,
BglG transcriptional antiterminator (monomer) ,
YgiV DNA-binding transcriptional repressor ,
c-di-GMP phosphodiesterase, heme-regulated (dosP) ,
YqjI DNA-binding transcriptional repressor ,
predicted DNA-binding transcriptional regulator (yjjQ) ,
diguanylate cyclase (dosC) ,
conserved protein (yeeN) ,
conserved protein (yebC) ,
toxin of the YafQ-DinJ toxin-antitoxin system ,
mRNA interferase, toxin of the MqsR-MqsA toxin-antitoxin system ,
toxin of the YoeB-YefM toxin-antitoxin pair ,
ArcB sensory histidine kinase ,
MazE antitoxin of the MazF-MazE toxin-antitoxin system ,
MazF toxin of the MazF-MazE toxin-antitoxin system that exhibits ribonuclease activity ,
ChpS antitoxin of the ChpB-ChpS toxin-antitoxin system ,
BaeR-Phosphorylated DNA-binding transcriptional activator ,
ZraR-Phosphorylated DNA-binding transcriptional activator ,
FlhC ,
bifunctional biotin-[acetyl-CoA-carboxylase] ligase and transcriptional repressor (birA) ,
AscG DNA-binding transcriptional repressor ,
FlhD ,
DNA gyrase, subunit A ,
DNA gyrase, subunit B (gyrB) ,
regulator of the transcriptional regulator FhlA (hycA) ,
Nlp transcriptional regulator (sfsB) ,
transcription antitermination protein NusB ,
aminopeptidase A/I (pepA) ,
PhnF predicted transcriptional regulator ,
stimulates PspC-mediated transcriptional activation of the psp operon; antitoxin of a PspC-PspB toxin-antitoxin pair ,
PspC transcriptional regulator; toxin of a PspC-PspB toxin-antitoxin pair ,
RelB Qin prophage; antitoxin of the RelE-RelB toxin-antitoxin system and DNA binding transcriptional repressor ,
transcription termination factor Rho monomer; polarity suppressor ,
RNA Polymerase (RNAP)-binding ATPase and RNAP recycling factor (hepA) ,
FimZ transcriptional regulator ,
GcvR predicted transcriptional regulator ,
GlrR DNA-binding transcriptional activator ,
predicted DNA-binding transcriptional regulator, LYSR-type (ybeF) ,
predicted DNA-binding transcriptional regulator LYSR-type (yafC) ,
putative ARAC-type regulatory protein (yidL) ,
predicted DNA-binding transcriptional regulator (yidP) ,
putative transcriptional regulator LysR-type (yidZ) ,
predicted DNA-binding transcriptional regulator LYSR-type (yfiE) ,
YihL putative transcriptional regulator ,
FrvR predicted transcriptional regulator ,
predicted DNA-binding transcriptional regulator (yijO) ,
Zur ,
MlrA DNA binding transcriptional activator ,
LYSR-type transcriptional regulator (yeiE) ,
NorR DNA-binding transcriptional dual regulator ,
AcrR DNA-binding transcriptional repressor ,
LrhA DNA-binding transcriptional dual regulator ,
protein with similarity to transcriptional regulators (ydhB) ,
putative ARAC-type regulatory protein (eutR) ,
ArsR ,
GadW DNA-binding transcriptional dual regulator ,
GadX DNA-binding transcriptional dual regulator ,
predicted DNA-binding response regulator in two-component regulatory system (yhjB) ,
predicted DNA-binding transcriptional regulator (yhjC) ,
predicted DNA-binding transcriptional regulator, LysR-type (yiaU) ,
PspF transcriptional dual regulator ,
CsiR DNA-binding transcriptional repressor ,
predicted DNA-binding transcriptional regulator (ybiH) ,
UxuR DNA-binding transcriptional repressor ,
anti-sigma factor for FliA (σ28) (flgM) ,
CaiF ,
CP4-6 prophage; predicted DNA-binding transcriptional regulator (yagI) ,
predicted DNA-binding transcriptional regulator (ykgA) ,
RclR DNA-binding transcriptional activator ,
predicted DNA-binding transcriptional regulator, LysR-type (yahB) ,
MhpR transcriptional activator ,
predicted DNA-binding transcriptional regulator (ybaO) ,
CueR transcriptional dual regulator ,
predicted DNA-binding transcriptional regulator LYSR-type (ybdO) ,
DpiA ,
putative transcriptional regulator LYSR-type (ycaN) ,
DhaR DNA-binding transcriptional dual regulator ,
DNA-binding transcriptional regulator (yciT) ,
predicted DNA-binding transcriptional regulator, LacI type (ycjW) ,
PgrR DNA-binding transcriptional repressor ,
predicted DNA-binding transcriptional regulator, LYSR-type (abgR) ,
YdcI DNA-binding transcriptional repressor ,
YdeO DNA-binding transcriptional dual regulator ,
predicted DNA-binding transcriptional regulator, LysR-type (yneJ) ,
YdfH DNA-binding transcriptional repressor ,
UidR DNA-binding transcriptional repressor ,
SlyA DNA-binding transcriptional activator ,
predicted DNA-binding transcriptional regulator (ydiP) ,
predicted DNA-binding transcriptional regulator (ydjF) ,
predicted DNA-binding transcriptional regulator (yeaM) ,
predicted DNA-binding response regulator in two-component system with YedV (yedW) ,
Cbl DNA-binding transcriptional activator ,
predicted DNA-binding transcriptional regulator (yeeY) ,
predicted DNA-binding transcriptional regulator (yegW) ,
YpdB transcriptional regulator ,
predicted ARAC-type regulatory protein (ypdC) ,
predicted DNA-binding transcriptional regulator, LYSR-type (yfeR) ,
IscR DNA-binding transcriptional dual regulator ,
predicted DNA-binding transcriptional regulator, DEOR-type (ygbI) ,
predicted DNA-binding transcriptional regulator (ygeK) ,
putative transcriptional regulator (ygeV) ,
predicted DNA-binding transcriptional regulator LYSR-type (ygfI) ,
YqhC DNA-binding transcriptional activator ,
predicted DNA-binding transcriptional regulator LYSR-type (yhaJ) ,
NanR DNA-binding transcriptional dual regulator ,
quorum sensing transcriptional regulator of LYSR-type (aaeR) ,
predicted DNA-binding transcriptional regulator (frlR) ,
UlaR DNA-binding transcriptional repressor ,
IdnR transcriptional regulator ,
KpLE2 phage-like element; predicted DNA-binding transcriptional regulator (yjhI) ,
KpLE2 phage-like element; predicted DNA-binding transcriptional regulator (sgcR) ,
HypT transcriptional dual regulator ,
putative regulator (yjiR) ,
ModE ,
OmpR ,
IlvY DNA-binding transcriptional dual regulator ,
LexA ,
PurR ,
RhaR transcriptional activator ,
Ada DNA-binding transcriptional dual regulator ,
CysB ,
AraC ,
CRP transcriptional dual regulator ,
H-NS DNA-binding transcriptional dual regulator (hns) ,
CynR DNA-binding transcriptional repressor ,
DsdC DNA-binding transcriptional dual regulator ,
GcvA DNA-binding transcriptional dual regulator ,
LysR DNA-binding transcriptional dual regulator ,
CadC DNA-binding transcriptional activator ,
FucR transcriptional activator ,
LacI DNA-binding transcriptional repressor ,
EnvY DNA-binding transcriptional activator ,
FadR DNA-binding transcriptional dual regulator ,
Mlc DNA-binding transcriptional repressor ,
positive DNA-binding transcriptional regulator of capsular polysaccharide synthesis, activates its own expression (rcsA) ,
FhlA transcriptional activator ,
GalR DNA-binding transcriptional dual regulator ,
CspA DNA-binding transcriptional activator ,
MetJ transcriptional repressor ,
SoxR DNA-binding transcriptional dual regulator ,
NadR DNA-binding transcriptional repressor and NMN adenylyltransferase ,
NtrC transcriptional dual regulator (glnG) ,
fused PutA transcriptional repressor / proline dehydrogenase / 1-pyrroline-5-carboxylate dehydrogenase ,
RcsB ,
predicted DNA-binding transcriptional regulator (yihW) ,
DNA topoisomerase III (topB) ,
RbsR DNA-binding transcriptional dual regulator ,
RNA polymerase, β' subunit (rpoC) ,
predicted DNA-binding transcriptional regulator (ybaQ) ,
MurR ,
predicted DNA-binding transcriptional regulator (yebK) ,
predicted transcriptional regulator (yjdC) ,
predicted DNA-binding transcriptional regulator (yfaX) ,
predicted DNA-binding transcriptional regulator (ybhD) ,
surface exposed outer membrane lipoprotein (yaiW) ,
predicted DNA-binding transcriptional regulator (yghO) ,
predicted transcriptional regulator (bdcR) ,
predicted DNA-binding transcriptional regulator (yfhH) ,
fused predicted DNA-binding transcriptional regulator and predicted amino transferase (ydcR) ,
predicted DNA-binding transcriptional regulator (yaiV) ,
transcriptional dual regulator HU-α (HU-2) (hupA) ,
BolA DNA-binding transcriptional dual regulator ,
DcuR transcriptional activator ,
LsrR ,
integration host factor (IHF), α subunit (ihfA) ,
integration host factor (IHF), β subunit (ihfB) ,
MprA ,
PaaX ,
QseB transcriptional activator ,
YeiL DNA-binding transcriptional activator ,
DicA DNA-binding transcriptional dual regulator ,
Fur ,
GatR_2 ,
HipB ,
transcriptional dual regulator HU-β, NS1 (HU-1) (hupB) ,
Rac prophage; predicted DNA-binding transcriptional regulator (racR) ,
RNA polymerase, sigma 70 (sigma D) factor (rpoD) ,
Qin prophage; DNA-binding transcriptional regulator for DicB (dicC) ,
MalT transcriptional activator ,
CreB transcriptional regulator ,
Qin prophage; cold shock protein (cspF) ,
cold shock protein CspG ,
stress protein, member of the CspA family (cspH) ,
Qin prophage; cold shock protein (cspI) ,
PuuR DNA-binding transcriptional repressor ,
predicted transcriptional regulator (yiaG) ,
PII (glnB) ,
poly(A) polymerase I (pcnB) ,
GlnK ,
predicted transcriptional regulator (ytfH) ,
regulator for fimA (fimB) ,
regulator for fimA (fimE) ,
predicted cation transport regulator (chaB) ,
BarA sensory histidine kinase ,
UvrY transcriptional regulator ,
RNA polymerase, sigma 28 (sigma F) factor (fliA) ,
RNA polymerase, sigma 32 (sigma H) factor (rpoH) ,
Qin prophage; toxin of the RelE-RelB toxin-antitoxin system and cofactor to enhance the repressor activity of RelB ,
ZraR transcriptional activator ,
bifunctional β-cystathionase, PLP-dependent and regulator of maltose regulon (malY) ,
RNA polymerase, sigma 19 factor (fecI) ,
PhoP ,
predicted DNA-binding transcriptional regulator (dgoR) ,
predicted transcriptional regulator (yieP) ,
SgrR DNA-binding transcriptional dual regulator ,
negative DNA-binding transcriptional regulator of galactitol metabolism (gatR_1) ,
Qin prophage; cold shock protein; predicted DNA-binding transcriptional regulator (cspB) ,
DNA-binding transcriptional regulator, prophage P2 remnant (ogrK) ,
predicted DNA-binding transcriptional regulator (dctR) ,
KpLE2 phage-like element; predicted DNA-binding transcriptional regulator (yjhU) ,
RstA transcriptional regulator ,
CP4-57 prophage; predicted DNA-binding transcriptional regulator (yfjR) ,
50S ribosomal subunit protein L4 (rplD) ,
antitoxin of the HicA-HicB toxin-antitoxin system ,
predicted DNA-binding transcriptional regulator (yddM) ,
MatA DNA-binding transcriptional dual regulator (ecpR) ,
RcdA DNA-binding transcriptional regulator ,
e14 prophage; predicted repressor protein (ymfK) ,
predicted transcriptional regulator (yneL) ,
Qin prophage; predicted antitermination protein Q (ydfT) ,
predicted transcriptional regulator (ygeH) ,
predicted DNA-binding transcriptional regulator (ygaV) ,
predicted DNA-binding transcriptional regulator (ynfL) ,
predicted DNA-binding transcriptional regulator (ydcN) ,
DLP12 prophage; predicted DNA-binding transcriptional regulator (ybcM) ,
predicted transcriptional regulator (yqeI) ,
DLP12 prophage; predicted antitermination protein (ybcQ) ,
PerR transcriptional regulator ,
flagellar biosynthesis protein FliT ,
predicted DNA-binding transcriptional regulator (lgoR) ,
RNA polymerase, β subunit (rpoB) ,
RNA polymerase, ω subunit (rpoZ) ,
RNA polymerase, α subunit (rpoA)

Unification Links: GO:0006351


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Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 18.5 on Mon Dec 22, 2014, biocyc13.