Metabolic Modeling Tutorial
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Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
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Escherichia coli K-12 substr. MG1655 Gene-Ontology-Terms Class: GO:0006351 - transcription, DNA-templated

Synonyms: GO:0006350, GO:0061018, GO:0061022, cellular transcription, DNA-dependent, DNA-dependent transcription, transcription, DNA-dependent

Definition: The cellular synthesis of RNA on a template of DNA.

Parent Classes:
GO:0032774 - RNA biosynthetic process ,
GO:0034645 - cellular macromolecule biosynthetic process

Child Classes:
GO:0001121 - transcription from bacterial-type RNA polymerase promoter (3)

Parts:
GO:0006354 - DNA-templated transcription, elongation (3) ,
GO:0006352 - DNA-templated transcription, initiation (11) ,
GO:0006353 - DNA-templated transcription, termination (6) ,
GO:0006355 - regulation of transcription, DNA-templated (424)

Term Members:
MraZ DNA-binding transcriptional repressor ,
negative feedback regulator of the PhoQP system (mgrB) ,
rseB ,
anti-sigma factor (rseA) ,
haemolysin expression modulating protein (hha) ,
antitoxin of the YafO-YafN toxin-antitoxin system ,
DinJ antitoxin of YafQ-DinJ toxin-antitoxin system and DNA-binding transcriptional repressor ,
HcaR transcriptional dual regulator ,
FeaR DNA-binding transcriptional activator ,
Nac DNA-binding transcriptional dual regulator ,
MqsA antitoxin of the MqsRA toxin-antitoxin system and DNA-binding transcriptional repressor ,
prophage excisionase and response regulator inhibitor (torI) ,
AtoC transcriptional activator; Az protein inhibitor of ODC ,
PrpR DNA-binding transcriptional dual regulator ,
KdgR DNA-binding transcriptional repressor ,
DmlR DNA-binding transcriptional regulator ,
anti-FlhDC factor (ydiV) ,
McbR DNA-binding transcriptional dual regulator ,
BluR DNA-binding transcriptional repressor ,
ComR DNA-binding transcriptional repressor ,
HyfR DNA-binding transcriptional activator ,
YefM antitoxin of the YoeB-YefM toxin-antitoxin pair and DNA binding transcriptional repressor ,
BaeR transcriptional regulator ,
antitoxin of the HigB-HigA toxin-antitoxin system ,
NemR DNA-binding transcriptional repressor ,
YhaV toxic endonuclease ,
RcnR DNA-binding transcriptional repressor ,
GadE DNA-binding transcriptional activator ,
CsgD DNA-binding transcriptional dual regulator ,
Dan (ttdR) ,
BglJ DNA-binding transcriptional regulator ,
TorR ,
RtcR DNA-binding transcriptional activator ,
YiaJ DNA-binding transcriptional repressor ,
CdaR DNA-binding transcriptional activator ,
TreR transcriptional repressor ,
AlpA DNA-binding transcriptional activator; CP4-57 prophage ,
AdiY DNA-binding transcriptional activator ,
NarP ,
BasR transcriptional regulator ,
transcription elongation factor GreB ,
MarR transcriptional repressor ,
GalS DNA-binding transcriptional dual regulator ,
RNA polymerase holoenzyme assembly factor Crl ,
XapR transcriptional activator ,
KdpE transcriptional activator ,
MalI DNA-binding transcriptional repressor ,
BetI DNA-binding transcriptional repressor ,
ChbR DNA-binding transcriptional dual regulator ,
IclR transcriptional repressor ,
PrlF antitoxin ,
GutR DNA-binding transcriptional repressor (srlR) ,
GutM DNA-binding transcriptional activator ,
MngR ,
RNA polymerase, sigma S (sigma 38) factor (rpoS) ,
TdcR DNA-binding transcriptional activator ,
LeuO DNA-binding transcriptional dual regulator ,
RNA polymerase, sigma 24 (sigma E) factor (rpoE) ,
UhpA transcriptional activator ,
regulator of σ70D), stationary phase protein (rsd) ,
RfaH transcriptional antiterminator ,
YehT ,
PhoB transcriptional dual regulator ,
transcription termination factor NusG ,
transcription termination/antitermination L factor (nusA) ,
NsrR ,
NarL ,
NagC DNA-binding transcriptional dual regulator ,
MtlR DNA-binding transcriptional repressor ,
CpxR transcriptional dual regulator ,
CusR ,
EvgA transcriptional regulator ,
FabR DNA-binding transcriptional repressor ,
RutR DNA-binding transcriptional dual regulator ,
EnvR DNA-binding transcriptional repressor ,
AlsR DNA-binding transcriptional repressor (rpiR) ,
ZntR transcriptional activator ,
AllS transcriptional activator ,
TdcA DNA-binding transcriptional activator ,
OxyR DNA-binding transcriptional dual regulator ,
GntR DNA-binding transcriptional repressor ,
Cra DNA-binding transcriptional dual regulator ,
CytR ,
AllR DNA-binding transcriptional repressor ,
PdhR DNA-binding transcriptional dual regulator ,
LldR transcriptional repressor ,
GlcC transcriptional dual regulator ,
ExuR DNA-binding transcriptional repressor ,
GlpR DNA-binding transcriptional repressor ,
DeoR DNA-binding transcriptional repressor ,
AgaR DNA-binding transcriptional repressor ,
Lrp transcriptional dual regulator ,
AsnC ,
XylR transcriptional activator ,
MelR DNA-binding transcriptional dual regulator ,
MarA DNA-binding transcriptional dual regulator ,
regulator protein (frmR) ,
stress protein, member of the CspA family (cspC) ,
ArcA transcriptional dual regulator ,
NhaR transcriptional activator ,
MetR ,
MntR ,
FNR ,
SoxS DNA-binding transcriptional dual regulator ,
transcription antiterminator and regulator of RNA stability (cspE) ,
ArgP transcriptional activator ,
HdfR DNA-binding transcriptional dual regulator ,
NrdR ,
TrpR ,
30S ribosomal subunit protein S4 (rpsD) ,
NikR DNA-binding transcriptional repressor, Ni-binding ,
transcription elongation factor GreA ,
Fis ,
ArgR ,
RhaS ,
TyrR DNA-binding transcriptional dual regulator ,
SdiA DNA-binding transcriptional dual regulator ,
EbgR DNA-binding transcriptional repressor ,
AppY DNA-binding transcriptional activator ,
chromosomal replication initiator protein DnaA; DNA-binding transcriptional dual regulator ,
predicted protein (ygeL) ,
BglG transcriptional antiterminator (monomer) ,
YgiV DNA-binding transcriptional repressor ,
c-di-GMP phosphodiesterase, heme-regulated (dosP) ,
YqjI DNA-binding transcriptional repressor ,
predicted DNA-binding transcriptional regulator (yjjQ) ,
diguanylate cyclase (dosC) ,
conserved protein (yeeN) ,
conserved protein (yebC) ,
toxin of the YafQ-DinJ toxin-antitoxin system ,
mRNA interferase, toxin of the MqsR-MqsA toxin-antitoxin system ,
toxin of the YoeB-YefM toxin-antitoxin pair ,
ArcB sensory histidine kinase ,
MazE antitoxin of the MazF-MazE toxin-antitoxin system ,
MazF toxin of the MazF-MazE toxin-antitoxin system that exhibits ribonuclease activity ,
ChpS antitoxin of the ChpB-ChpS toxin-antitoxin system ,
BaeR-Phosphorylated DNA-binding transcriptional activator ,
ZraR-Phosphorylated DNA-binding transcriptional activator ,
FlhC ,
bifunctional biotin-[acetyl-CoA-carboxylase] ligase and transcriptional repressor (birA) ,
AscG DNA-binding transcriptional repressor ,
FlhD ,
DNA gyrase, subunit A ,
DNA gyrase, subunit B (gyrB) ,
regulator of the transcriptional regulator FhlA (hycA) ,
Nlp transcriptional regulator (sfsB) ,
transcription antitermination protein NusB ,
aminopeptidase A/I (pepA) ,
PhnF predicted transcriptional regulator ,
stimulates PspC-mediated transcriptional activation of the psp operon; antitoxin of a PspC-PspB toxin-antitoxin pair ,
PspC transcriptional regulator; toxin of a PspC-PspB toxin-antitoxin pair ,
RelB Qin prophage; antitoxin of the RelE-RelB toxin-antitoxin system and DNA binding transcriptional repressor ,
transcription termination factor Rho monomer; polarity suppressor ,
RNA Polymerase (RNAP)-binding ATPase and RNAP recycling factor (hepA) ,
FimZ transcriptional regulator ,
GcvR predicted transcriptional regulator ,
GlrR DNA-binding transcriptional activator ,
predicted DNA-binding transcriptional regulator, LYSR-type (ybeF) ,
predicted DNA-binding transcriptional regulator LYSR-type (yafC) ,
putative ARAC-type regulatory protein (yidL) ,
predicted DNA-binding transcriptional regulator (yidP) ,
putative transcriptional regulator LysR-type (yidZ) ,
predicted DNA-binding transcriptional regulator LYSR-type (yfiE) ,
YihL putative transcriptional regulator ,
FrvR predicted transcriptional regulator ,
predicted DNA-binding transcriptional regulator (yijO) ,
Zur ,
MlrA DNA binding transcriptional activator ,
LYSR-type transcriptional regulator (yeiE) ,
NorR DNA-binding transcriptional dual regulator ,
AcrR DNA-binding transcriptional repressor ,
LrhA DNA-binding transcriptional dual regulator ,
protein with similarity to transcriptional regulators (ydhB) ,
putative ARAC-type regulatory protein (eutR) ,
ArsR ,
GadW DNA-binding transcriptional dual regulator ,
GadX DNA-binding transcriptional dual regulator ,
predicted DNA-binding response regulator in two-component regulatory system (yhjB) ,
predicted DNA-binding transcriptional regulator (yhjC) ,
predicted DNA-binding transcriptional regulator, LysR-type (yiaU) ,
PspF transcriptional dual regulator ,
CsiR DNA-binding transcriptional repressor ,
predicted DNA-binding transcriptional regulator (ybiH) ,
UxuR DNA-binding transcriptional repressor ,
anti-sigma factor for FliA (σ28) (flgM) ,
CaiF ,
CP4-6 prophage; predicted DNA-binding transcriptional regulator (yagI) ,
predicted DNA-binding transcriptional regulator (ykgA) ,
RclR DNA-binding transcriptional activator ,
predicted DNA-binding transcriptional regulator, LysR-type (yahB) ,
MhpR transcriptional activator ,
predicted DNA-binding transcriptional regulator (ybaO) ,
CueR transcriptional dual regulator ,
predicted DNA-binding transcriptional regulator LYSR-type (ybdO) ,
DpiA ,
putative transcriptional regulator LYSR-type (ycaN) ,
DhaR DNA-binding transcriptional dual regulator ,
DNA-binding transcriptional regulator (yciT) ,
predicted DNA-binding transcriptional regulator, LacI type (ycjW) ,
PgrR DNA-binding transcriptional repressor ,
predicted DNA-binding transcriptional regulator, LYSR-type (abgR) ,
YdcI DNA-binding transcriptional repressor ,
YdeO DNA-binding transcriptional dual regulator ,
predicted DNA-binding transcriptional regulator, LysR-type (yneJ) ,
YdfH DNA-binding transcriptional repressor ,
UidR DNA-binding transcriptional repressor ,
SlyA DNA-binding transcriptional activator ,
predicted DNA-binding transcriptional regulator (ydiP) ,
predicted DNA-binding transcriptional regulator (ydjF) ,
predicted DNA-binding transcriptional regulator (yeaM) ,
predicted DNA-binding response regulator in two-component system with YedV (yedW) ,
Cbl DNA-binding transcriptional activator ,
predicted DNA-binding transcriptional regulator (yeeY) ,
predicted DNA-binding transcriptional regulator (yegW) ,
YpdB transcriptional regulator ,
predicted ARAC-type regulatory protein (ypdC) ,
predicted DNA-binding transcriptional regulator, LYSR-type (yfeR) ,
IscR DNA-binding transcriptional dual regulator ,
predicted DNA-binding transcriptional regulator, DEOR-type (ygbI) ,
predicted DNA-binding transcriptional regulator (ygeK) ,
putative transcriptional regulator (ygeV) ,
predicted DNA-binding transcriptional regulator LYSR-type (ygfI) ,
YqhC DNA-binding transcriptional activator ,
predicted DNA-binding transcriptional regulator LYSR-type (yhaJ) ,
NanR DNA-binding transcriptional dual regulator ,
quorum sensing transcriptional regulator of LYSR-type (aaeR) ,
predicted DNA-binding transcriptional regulator (frlR) ,
UlaR DNA-binding transcriptional repressor ,
IdnR transcriptional regulator ,
KpLE2 phage-like element; predicted DNA-binding transcriptional regulator (yjhI) ,
KpLE2 phage-like element; predicted DNA-binding transcriptional regulator (sgcR) ,
HypT transcriptional dual regulator ,
putative regulator (yjiR) ,
ModE ,
OmpR ,
IlvY DNA-binding transcriptional dual regulator ,
LexA ,
PurR ,
RhaR transcriptional activator ,
Ada DNA-binding transcriptional dual regulator ,
CysB ,
AraC ,
CRP transcriptional dual regulator ,
H-NS DNA-binding transcriptional dual regulator (hns) ,
CynR DNA-binding transcriptional repressor ,
DsdC DNA-binding transcriptional dual regulator ,
GcvA DNA-binding transcriptional dual regulator ,
LysR DNA-binding transcriptional dual regulator ,
CadC DNA-binding transcriptional activator ,
FucR transcriptional activator ,
LacI DNA-binding transcriptional repressor ,
EnvY DNA-binding transcriptional activator ,
FadR DNA-binding transcriptional dual regulator ,
Mlc DNA-binding transcriptional repressor ,
positive DNA-binding transcriptional regulator of capsular polysaccharide synthesis, activates its own expression (rcsA) ,
FhlA transcriptional activator ,
GalR DNA-binding transcriptional dual regulator ,
CspA DNA-binding transcriptional activator ,
MetJ transcriptional repressor ,
SoxR DNA-binding transcriptional dual regulator ,
NadR DNA-binding transcriptional repressor and NMN adenylyltransferase ,
NtrC transcriptional dual regulator (glnG) ,
fused PutA transcriptional repressor / proline dehydrogenase / 1-pyrroline-5-carboxylate dehydrogenase ,
RcsB ,
predicted DNA-binding transcriptional regulator (yihW) ,
DNA topoisomerase III (topB) ,
RbsR DNA-binding transcriptional dual regulator ,
RNA polymerase, β' subunit (rpoC) ,
predicted DNA-binding transcriptional regulator (ybaQ) ,
MurR ,
predicted DNA-binding transcriptional regulator (yebK) ,
predicted transcriptional regulator (yjdC) ,
predicted DNA-binding transcriptional regulator (yfaX) ,
predicted DNA-binding transcriptional regulator (ybhD) ,
surface exposed outer membrane lipoprotein (yaiW) ,
predicted DNA-binding transcriptional regulator (yghO) ,
predicted transcriptional regulator (bdcR) ,
predicted DNA-binding transcriptional regulator (yfhH) ,
fused predicted DNA-binding transcriptional regulator and predicted amino transferase (ydcR) ,
predicted DNA-binding transcriptional regulator (yaiV) ,
transcriptional dual regulator HU-α (HU-2) (hupA) ,
BolA DNA-binding transcriptional dual regulator ,
DcuR transcriptional activator ,
LsrR ,
integration host factor (IHF), α subunit (ihfA) ,
integration host factor (IHF), β subunit (ihfB) ,
MprA ,
PaaX ,
QseB transcriptional activator ,
YeiL DNA-binding transcriptional activator ,
DicA DNA-binding transcriptional dual regulator ,
Fur ,
GatR_2 ,
HipB ,
transcriptional dual regulator HU-β, NS1 (HU-1) (hupB) ,
Rac prophage; predicted DNA-binding transcriptional regulator (racR) ,
RNA polymerase, sigma 70 (sigma D) factor (rpoD) ,
Qin prophage; DNA-binding transcriptional regulator for DicB (dicC) ,
MalT transcriptional activator ,
CreB transcriptional regulator ,
Qin prophage; cold shock protein (cspF) ,
cold shock protein CspG ,
stress protein, member of the CspA family (cspH) ,
Qin prophage; cold shock protein (cspI) ,
PuuR DNA-binding transcriptional repressor ,
predicted transcriptional regulator (yiaG) ,
PII (glnB) ,
poly(A) polymerase I (pcnB) ,
GlnK ,
predicted transcriptional regulator (ytfH) ,
regulator for fimA (fimB) ,
regulator for fimA (fimE) ,
predicted cation transport regulator (chaB) ,
BarA sensory histidine kinase ,
UvrY transcriptional regulator ,
RNA polymerase, sigma 28 (sigma F) factor (fliA) ,
RNA polymerase, sigma 32 (sigma H) factor (rpoH) ,
Qin prophage; toxin of the RelE-RelB toxin-antitoxin system and cofactor to enhance the repressor activity of RelB ,
ZraR transcriptional activator ,
bifunctional β-cystathionase, PLP-dependent and regulator of maltose regulon (malY) ,
RNA polymerase, sigma 19 factor (fecI) ,
PhoP ,
predicted DNA-binding transcriptional regulator (dgoR) ,
predicted transcriptional regulator (yieP) ,
SgrR DNA-binding transcriptional dual regulator ,
negative DNA-binding transcriptional regulator of galactitol metabolism (gatR_1) ,
Qin prophage; cold shock protein; predicted DNA-binding transcriptional regulator (cspB) ,
DNA-binding transcriptional regulator, prophage P2 remnant (ogrK) ,
predicted DNA-binding transcriptional regulator (dctR) ,
KpLE2 phage-like element; predicted DNA-binding transcriptional regulator (yjhU) ,
RstA transcriptional regulator ,
CP4-57 prophage; predicted DNA-binding transcriptional regulator (yfjR) ,
50S ribosomal subunit protein L4 (rplD) ,
antitoxin of the HicA-HicB toxin-antitoxin system ,
predicted DNA-binding transcriptional regulator (yddM) ,
MatA DNA-binding transcriptional dual regulator (ecpR) ,
RcdA DNA-binding transcriptional regulator ,
e14 prophage; predicted repressor protein (ymfK) ,
predicted transcriptional regulator (yneL) ,
Qin prophage; predicted antitermination protein Q (ydfT) ,
predicted transcriptional regulator (ygeH) ,
predicted DNA-binding transcriptional regulator (ygaV) ,
predicted DNA-binding transcriptional regulator (ynfL) ,
predicted DNA-binding transcriptional regulator (ydcN) ,
DLP12 prophage; predicted DNA-binding transcriptional regulator (ybcM) ,
predicted transcriptional regulator (yqeI) ,
DLP12 prophage; predicted antitermination protein (ybcQ) ,
PerR transcriptional regulator ,
flagellar biosynthesis protein FliT ,
predicted DNA-binding transcriptional regulator (lgoR) ,
RNA polymerase, β subunit (rpoB) ,
RNA polymerase, ω subunit (rpoZ) ,
RNA polymerase, α subunit (rpoA)

Unification Links: GO:0006351


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Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 18.5 on Wed Dec 17, 2014, biocyc13.