Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
twitter

Escherichia coli K-12 substr. MG1655 Gene-Ontology-Terms Class: GO:0006355 - regulation of transcription, DNA-templated

Synonyms: GO:0032583, GO:0045449, GO:0061019, regulation of cellular transcription, DNA-dependent, regulation of transcription, DNA-dependent

Definition: Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.

Parent Classes:
GO:0010468 - regulation of gene expression ,
GO:2000112 - regulation of cellular macromolecule biosynthetic process ,
GO:2001141 - regulation of RNA biosynthetic process

Part Of:
GO:0006351 - transcription, DNA-templated

Child Classes:
GO:0031554 - regulation of DNA-templated transcription, termination (21) ,
GO:0032784 - regulation of DNA-templated transcription, elongation (4) ,
GO:0034401 - regulation of transcription by chromatin organization (1) ,
GO:0045892 - negative regulation of transcription, DNA-templated (92) ,
GO:0045893 - positive regulation of transcription, DNA-templated (66) ,
GO:0045990 - carbon catabolite regulation of transcription (2) ,
GO:0051090 - regulation of sequence-specific DNA binding transcription factor activity (6) ,
GO:2000142 - regulation of DNA-templated transcription, initiation (20)

Term Members:
MraZ DNA-binding transcriptional repressor ,
negative feedback regulator of the PhoQP system (mgrB) ,
rseB ,
anti-sigma factor (rseA) ,
haemolysin expression modulating protein (hha) ,
DinJ antitoxin of YafQ-DinJ toxin-antitoxin system and DNA-binding transcriptional repressor ,
HcaR transcriptional dual regulator ,
FeaR DNA-binding transcriptional activator ,
Nac DNA-binding transcriptional dual regulator ,
prophage excisionase and response regulator inhibitor (torI) ,
AtoC transcriptional activator; Az protein inhibitor of ODC ,
PrpR DNA-binding transcriptional dual regulator ,
MurR ,
KdgR DNA-binding transcriptional repressor ,
DmlR DNA-binding transcriptional regulator ,
anti-FlhDC factor (ydiV) ,
McbR DNA-binding transcriptional dual regulator ,
BluR DNA-binding transcriptional repressor ,
ComR DNA-binding transcriptional repressor ,
HyfR DNA-binding transcriptional activator ,
YefM antitoxin of the YoeB-YefM toxin-antitoxin pair and DNA binding transcriptional repressor ,
BaeR transcriptional regulator ,
NemR DNA-binding transcriptional repressor ,
YhaV toxic endonuclease ,
RcnR DNA-binding transcriptional repressor ,
RNA Polymerase (RNAP)-binding ATPase and RNAP recycling factor (hepA) ,
CsgD DNA-binding transcriptional dual regulator ,
Dan (ttdR) ,
BglJ DNA-binding transcriptional regulator ,
RtcR DNA-binding transcriptional activator ,
YiaJ DNA-binding transcriptional repressor ,
CdaR DNA-binding transcriptional activator ,
TreR transcriptional repressor ,
AlpA DNA-binding transcriptional activator; CP4-57 prophage ,
AdiY DNA-binding transcriptional activator ,
transcription elongation factor GreB ,
MarR transcriptional repressor ,
RNA polymerase holoenzyme assembly factor Crl ,
AscG DNA-binding transcriptional repressor ,
XapR transcriptional activator ,
MalI DNA-binding transcriptional repressor ,
BetI DNA-binding transcriptional repressor ,
ChbR DNA-binding transcriptional dual regulator ,
PrlF antitoxin ,
GutR DNA-binding transcriptional repressor (srlR) ,
MngR ,
TdcR DNA-binding transcriptional activator ,
RfaH transcriptional antiterminator ,
PhoB transcriptional dual regulator ,
transcription termination factor NusG ,
transcription termination/antitermination L factor (nusA) ,
MtlR DNA-binding transcriptional repressor ,
CpxR transcriptional dual regulator ,
FabR DNA-binding transcriptional repressor ,
RutR DNA-binding transcriptional dual regulator ,
EnvR DNA-binding transcriptional repressor ,
AcrR DNA-binding transcriptional repressor ,
AlsR DNA-binding transcriptional repressor (rpiR) ,
ZntR transcriptional activator ,
MprA ,
AllS transcriptional activator ,
TdcA DNA-binding transcriptional activator ,
OxyR DNA-binding transcriptional dual regulator ,
GntR DNA-binding transcriptional repressor ,
CytR ,
AllR DNA-binding transcriptional repressor ,
PdhR DNA-binding transcriptional dual regulator ,
LldR transcriptional repressor ,
ExuR DNA-binding transcriptional repressor ,
GlpR DNA-binding transcriptional repressor ,
DeoR DNA-binding transcriptional repressor ,
CRP transcriptional dual regulator ,
AsnC ,
MarA DNA-binding transcriptional dual regulator ,
regulator protein (frmR) ,
stress protein, member of the CspA family (cspC) ,
CspA DNA-binding transcriptional activator ,
CysB ,
MntR ,
transcription antiterminator and regulator of RNA stability (cspE) ,
ArgP transcriptional activator ,
HdfR DNA-binding transcriptional dual regulator ,
NrdR ,
30S ribosomal subunit protein S4 (rpsD) ,
transcription elongation factor GreA ,
ArgR ,
SdiA DNA-binding transcriptional dual regulator ,
EbgR DNA-binding transcriptional repressor ,
AppY DNA-binding transcriptional activator ,
chromosomal replication initiator protein DnaA; DNA-binding transcriptional dual regulator ,
predicted protein (ygeL) ,
BglG transcriptional antiterminator (monomer) ,
HypT-[Met-oxidized] DNA-binding transcriptional dual regulator ,
RcsB-phosphorylated DNA-binding transcriptional activator ,
phenylalanyl-tRNA synthetase (pheST) operon leader peptide (pheM) ,
YpdB-phosphorylated DNA binding transcriptional activator ,
conserved protein with bipartite regulator domain (yqeH) ,
predicted anti-terminator regulatory protein (ygcP) ,
AtoS ,
stationary phase inducible protein (csiE) ,
conserved protein (yhfY) ,
16S rRNA m5C967 methyltransferase (rsmB) ,
phosphodiesterase, c-di-GMP-specific (yahA) ,
SOS mutagenesis; error-prone repair; processed to UmuD'; forms complex with UmuC ,
SeqA, negative modulator of initiation of replication ,
stimulates PspC-mediated transcriptional activation of the psp operon; antitoxin of a PspC-PspB toxin-antitoxin pair ,
NtrB (glnL) ,
predicted transcriptional regulator (yiiE) ,
Rob DNA-binding transcriptional activator ,
H-NS-like DNA-binding protein with RNA chaperone activity (stpA) ,
LexA-regulated protein (ybfE) ,
DNA replication inhibitor (cspD) ,
DNA gyrase inhibitor YacG ,
RNA-binding protein that affects many cellular processes; homolog of mammalian Sm/Sm-like proteins (hfq) ,
PhoR ,
PerR transcriptional regulator ,
Cbl DNA-binding transcriptional activator ,
predicted transcriptional regulator (yqeI) ,
YqhC DNA-binding transcriptional activator ,
putative transcriptional regulator (ygeV) ,
predicted DNA-binding transcriptional regulator (ygeK) ,
predicted DNA-binding transcriptional regulator LYSR-type (ybdO) ,
predicted DNA-binding transcriptional regulator (yfaX) ,
fused predicted DNA-binding transcriptional regulator and predicted amino transferase (ydcR) ,
predicted DNA-binding transcriptional regulator (ydjF) ,
predicted DNA-binding transcriptional regulator, LysR-type (yahB) ,
predicted DNA-binding transcriptional regulator (ydcN) ,
predicted DNA-binding transcriptional regulator, LacI type (ycjW) ,
MhpR transcriptional activator ,
PgrR DNA-binding transcriptional repressor ,
predicted DNA-binding transcriptional regulator, LysR-type (yneJ) ,
CP4-6 prophage; predicted DNA-binding transcriptional regulator (yagI) ,
predicted DNA-binding transcriptional regulator (ygaV) ,
YdcI DNA-binding transcriptional repressor ,
predicted transcriptional regulator (ygeH) ,
predicted DNA-binding transcriptional regulator (yeeY) ,
predicted DNA-binding response regulator in two-component system with YedV (yedW) ,
predicted DNA-binding transcriptional regulator (yeaM) ,
Qin prophage; predicted antitermination protein Q (ydfT) ,
LsrR ,
predicted transcriptional regulator (yneL) ,
c-di-GMP phosphodiesterase, heme-regulated (dosP) ,
PaaX ,
Rac prophage; predicted DNA-binding transcriptional regulator (racR) ,
DNA-binding transcriptional regulator (yciT) ,
DhaR DNA-binding transcriptional dual regulator ,
e14 prophage; predicted repressor protein (ymfK) ,
putative transcriptional regulator LYSR-type (ycaN) ,
RcdA DNA-binding transcriptional regulator ,
MatA DNA-binding transcriptional dual regulator (ecpR) ,
antitoxin of the HicA-HicB toxin-antitoxin system ,
predicted DNA-binding transcriptional regulator LYSR-type (yhaJ) ,
YqjI DNA-binding transcriptional repressor ,
50S ribosomal subunit protein L4 (rplD) ,
predicted DNA-binding transcriptional regulator (ybhD) ,
predicted DNA-binding transcriptional regulator, DEOR-type (ygbI) ,
CP4-57 prophage; predicted DNA-binding transcriptional regulator (yfjR) ,
RstA transcriptional regulator ,
QseB transcriptional activator ,
predicted DNA-binding transcriptional regulator LYSR-type (ygfI) ,
Mlc DNA-binding transcriptional repressor ,
predicted DNA-binding transcriptional regulator (yebK) ,
DsdC DNA-binding transcriptional dual regulator ,
putative regulator (yjiR) ,
HypT transcriptional dual regulator ,
KpLE2 phage-like element; predicted DNA-binding transcriptional regulator (sgcR) ,
KpLE2 phage-like element; predicted DNA-binding transcriptional regulator (yjhI) ,
IdnR transcriptional regulator ,
predicted transcriptional regulator (bdcR) ,
UxuR DNA-binding transcriptional repressor ,
predicted DNA-binding transcriptional regulator (yfhH) ,
predicted DNA-binding transcriptional regulator, LysR-type (yiaU) ,
predicted DNA-binding transcriptional regulator (yhjC) ,
predicted DNA-binding response regulator in two-component regulatory system (yhjB) ,
PspF transcriptional dual regulator ,
CsiR DNA-binding transcriptional repressor ,
NorR DNA-binding transcriptional dual regulator ,
Qin prophage; cold shock protein; predicted DNA-binding transcriptional regulator (cspB) ,
negative DNA-binding transcriptional regulator of galactitol metabolism (gatR_1) ,
GatR_2 ,
LrhA DNA-binding transcriptional dual regulator ,
putative ARAC-type regulatory protein (eutR) ,
predicted DNA-binding transcriptional regulator LYSR-type (yfiE) ,
FrvR predicted transcriptional regulator ,
predicted DNA-binding transcriptional regulator (yihW) ,
predicted transcriptional regulator (yieP) ,
predicted DNA-binding transcriptional regulator, LYSR-type (ybeF) ,
predicted DNA-binding transcriptional regulator LYSR-type (yafC) ,
CynR DNA-binding transcriptional repressor ,
CadC DNA-binding transcriptional activator ,
HipB ,
PhoP ,
bifunctional β-cystathionase, PLP-dependent and regulator of maltose regulon (malY) ,
FhlA transcriptional activator ,
ZraR transcriptional activator ,
RelB Qin prophage; antitoxin of the RelE-RelB toxin-antitoxin system and DNA binding transcriptional repressor ,
Qin prophage; toxin of the RelE-RelB toxin-antitoxin system and cofactor to enhance the repressor activity of RelB ,
IscR DNA-binding transcriptional dual regulator ,
transcription termination factor Rho monomer; polarity suppressor ,
PspC transcriptional regulator; toxin of a PspC-PspB toxin-antitoxin pair ,
NtrC transcriptional dual regulator (glnG) ,
regulator of the transcriptional regulator FhlA (hycA) ,
anti-sigma factor for FliA (σ28) (flgM) ,
FimZ transcriptional regulator ,
UvrY transcriptional regulator ,
DcuS sensory histidine kinase ,
BarA sensory histidine kinase ,
ArcB sensory histidine kinase ,
predicted cation transport regulator (chaB) ,
YpdB transcriptional regulator ,
regulator for fimA (fimE) ,
regulator for fimA (fimB) ,
DcuR transcriptional activator ,
predicted transcriptional regulator (yjdC) ,
predicted DNA-binding transcriptional regulator (ybiH) ,
UidR DNA-binding transcriptional repressor ,
SoxR DNA-binding transcriptional dual regulator ,
predicted DNA-binding transcriptional regulator, LYSR-type (yfeR) ,
LYSR-type transcriptional regulator (yeiE) ,
protein with similarity to transcriptional regulators (ydhB) ,
RbsR DNA-binding transcriptional dual regulator ,
PurR ,
predicted transcriptional regulator (ytfH) ,
YdfH DNA-binding transcriptional repressor ,
FucR transcriptional activator ,
predicted DNA-binding transcriptional regulator (ybaO) ,
Nlp transcriptional regulator (sfsB) ,
H-NS DNA-binding transcriptional dual regulator (hns) ,
GlnK ,
Zur ,
flagellar biosynthesis protein FliT ,
BolA DNA-binding transcriptional dual regulator ,
diguanylate cyclase (dosC) ,
OmpR ,
PII (glnB) ,
UlaR DNA-binding transcriptional repressor ,
predicted transcriptional regulator (yiaG) ,
PuuR DNA-binding transcriptional repressor ,
predicted DNA-binding transcriptional regulator (ybaQ) ,
GcvR predicted transcriptional regulator ,
ModE ,
CueR transcriptional dual regulator ,
Fur ,
Qin prophage; cold shock protein (cspI) ,
stress protein, member of the CspA family (cspH) ,
cold shock protein CspG ,
Qin prophage; cold shock protein (cspF) ,
SlyA DNA-binding transcriptional activator ,
FlhD ,
conserved protein (yeeN) ,
conserved protein (yebC) ,
transcription antitermination protein NusB ,
integration host factor (IHF), β subunit (ihfB) ,
integration host factor (IHF), α subunit (ihfA) ,
fused PutA transcriptional repressor / proline dehydrogenase / 1-pyrroline-5-carboxylate dehydrogenase ,
RhaR transcriptional activator ,
CreB transcriptional regulator ,
ChpS antitoxin of the ChpB-ChpS toxin-antitoxin system ,
MalT transcriptional activator ,
DicA DNA-binding transcriptional dual regulator ,
Qin prophage; DNA-binding transcriptional regulator for DicB (dicC) ,
bifunctional biotin-[acetyl-CoA-carboxylase] ligase and transcriptional repressor (birA) ,
Ada DNA-binding transcriptional dual regulator ,
IlvY DNA-binding transcriptional dual regulator ,
LysR DNA-binding transcriptional dual regulator ,
LacI DNA-binding transcriptional repressor ,
IHF DNA-binding transcriptional dual regulator ,
GadE-RcsB DNA binding transcriptional activator ,
KdpE-Phosphorylated DNA-binding transcriptional activator ,
CpxR-Pasp DNA-binding transcriptional dual regulator ,
PaaX DNA-binding transcriptional repressor ,
DcuR-Phosphorylated DNA-binding transcriptional activator ,
CueR-Cu+ DNA-binding transcriptional dual regulator ,
CaiF ,
FlhDC DNA-binding transcriptional dual regulator ,
GutM DNA-binding transcriptional activator ,
IlvY-2-acetolactate DNA binding transcriptional dual regulator ,
toxin of the YafQ-DinJ toxin-antitoxin system ,
mRNA interferase, toxin of the MqsR-MqsA toxin-antitoxin system ,
toxin of the YoeB-YefM toxin-antitoxin pair ,
MazE antitoxin of the MazF-MazE toxin-antitoxin system ,
MazF toxin of the MazF-MazE toxin-antitoxin system that exhibits ribonuclease activity ,
predicted DNA-binding transcriptional regulator (yghO) ,
NsrR ,
predicted DNA-binding transcriptional regulator (yfeD) ,
LexA ,
YeiL DNA-binding transcriptional activator ,
regulator of σ70D), stationary phase protein (rsd) ,
NadR DNA-binding transcriptional repressor and NMN adenylyltransferase ,
DNA-binding transcriptional regulator, prophage P2 remnant (ogrK) ,
DLP12 prophage; predicted DNA-binding transcriptional regulator (ybcM) ,
DLP12 prophage; predicted antitermination protein (ybcQ) ,
SgrR DNA-binding transcriptional dual regulator ,
YgiV DNA-binding transcriptional repressor ,
antitoxin of the YafO-YafN toxin-antitoxin system ,
ArcA-Phosphorylated DNA-binding transcriptional dual regulator ,
DpiA-Pasp DNA-binding transcriptional dual regulator ,
MqsA antitoxin of the MqsRA toxin-antitoxin system and DNA-binding transcriptional repressor ,
predicted DNA-binding transcriptional regulator, LYSR-type (abgR) ,
predicted DNA-binding transcriptional regulator (ykgA) ,
predicted ARAC-type regulatory protein (ypdC) ,
RclR DNA-binding transcriptional activator ,
YdeO DNA-binding transcriptional dual regulator ,
quorum sensing transcriptional regulator of LYSR-type (aaeR) ,
GadW DNA-binding transcriptional dual regulator ,
predicted DNA-binding transcriptional regulator (frlR) ,
TorR ,
GadX DNA-binding transcriptional dual regulator ,
ArsR ,
predicted DNA-binding transcriptional regulator (dctR) ,
predicted DNA-binding transcriptional regulator (yijO) ,
NarP ,
putative transcriptional regulator LysR-type (yidZ) ,
predicted DNA-binding transcriptional regulator (yidP) ,
putative ARAC-type regulatory protein (yidL) ,
transcription-repair coupling factor (mfd) ,
BasR transcriptional regulator ,
GalS DNA-binding transcriptional dual regulator ,
RNA polymerase, sigma 54 (sigma N) factor (rpoN) ,
RNA polymerase, sigma 19 factor (fecI) ,
KdpE transcriptional activator ,
PhnF predicted transcriptional regulator ,
IclR transcriptional repressor ,
RNA polymerase, sigma S (sigma 38) factor (rpoS) ,
EnvY DNA-binding transcriptional activator ,
LeuO DNA-binding transcriptional dual regulator ,
RNA polymerase, sigma 24 (sigma E) factor (rpoE) ,
RNA polymerase, sigma 32 (sigma H) factor (rpoH) ,
UhpA transcriptional activator ,
GlrR DNA-binding transcriptional activator ,
NarL ,
NagC DNA-binding transcriptional dual regulator ,
RNA polymerase, sigma 28 (sigma F) factor (fliA) ,
DpiA ,
predicted DNA-binding transcriptional regulator (yjjQ) ,
EvgA transcriptional regulator ,
Cra DNA-binding transcriptional dual regulator ,
YihL putative transcriptional regulator ,
predicted DNA-binding transcriptional regulator (yegW) ,
GlcC transcriptional dual regulator ,
AgaR DNA-binding transcriptional repressor ,
Lrp transcriptional dual regulator ,
XylR transcriptional activator ,
MelR DNA-binding transcriptional dual regulator ,
FlhC ,
ArcA transcriptional dual regulator ,
NhaR transcriptional activator ,
MetR ,
GcvA DNA-binding transcriptional dual regulator ,
FNR ,
SoxS DNA-binding transcriptional dual regulator ,
AraC ,
NanR DNA-binding transcriptional dual regulator ,
FadR DNA-binding transcriptional dual regulator ,
MetJ transcriptional repressor ,
TrpR ,
NikR DNA-binding transcriptional repressor, Ni-binding ,
Fis ,
RhaS ,
TyrR DNA-binding transcriptional dual regulator ,
GalR DNA-binding transcriptional dual regulator ,
RNA polymerase, sigma 70 (sigma D) factor (rpoD) ,
predicted DNA-binding transcriptional regulator (dgoR) ,
GadE DNA-binding transcriptional activator ,
predicted DNA-binding transcriptional regulator (lgoR) ,
KpLE2 phage-like element; predicted DNA-binding transcriptional regulator (yjhU) ,
predicted transcriptional regulator (yhcF) ,
antitoxin of the HigB-HigA toxin-antitoxin system ,
predicted DNA-binding transcriptional regulator (ydiP) ,
predicted DNA-binding transcriptional regulator (ynfL) ,
predicted DNA-binding transcriptional regulator (yddM) ,
CusR ,
MlrA DNA binding transcriptional activator ,
YehT

Unification Links: GO:0006355


Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 18.5 on Mon Dec 22, 2014, biocyc12.