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discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
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Escherichia coli K-12 substr. MG1655 Gene-Ontology-Terms Class: GO:0043565 - sequence-specific DNA binding

Synonyms: sequence specific DNA binding

Definition: Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.

Parent Classes:
GO:0003677 - DNA binding

Child Classes:
GO:0000976 - transcription regulatory region sequence-specific DNA binding (35) ,
GO:0003688 - DNA replication origin binding (2) ,
GO:0008327 - methyl-CpG binding (2) ,
GO:0044374 - sequence-specific DNA binding, bending (2)

Term Members:
YdcI DNA-binding transcriptional repressor ,
MraZ DNA-binding transcriptional repressor ,
CPS-53 (KpLE1) prophage; prophage CPS-53 integrase (intS) ,
IS150 protein InsA (insJ) ,
PgrR DNA-binding transcriptional repressor ,
NadR DNA-binding transcriptional repressor and NMN adenylyltransferase ,
ChbR DNA-binding transcriptional dual regulator ,
putative transcriptional regulator (ygeV) ,
AtoC transcriptional activator; Az protein inhibitor of ODC ,
PrpR DNA-binding transcriptional dual regulator ,
DhaR DNA-binding transcriptional dual regulator ,
HyfR DNA-binding transcriptional activator ,
PspF transcriptional dual regulator ,
FhlA transcriptional activator ,
ZraR transcriptional activator ,
NtrC transcriptional dual regulator (glnG) ,
fused PutA transcriptional repressor / proline dehydrogenase / 1-pyrroline-5-carboxylate dehydrogenase ,
FeaR DNA-binding transcriptional activator ,
YqhC DNA-binding transcriptional activator ,
DLP12 prophage; predicted DNA-binding transcriptional regulator (ybcM) ,
predicted DNA-binding transcriptional regulator (ydcN) ,
predicted DNA-binding transcriptional regulator (ykgA) ,
predicted DNA-binding transcriptional regulator (ydiP) ,
predicted ARAC-type regulatory protein (ypdC) ,
RclR DNA-binding transcriptional activator ,
predicted DNA-binding transcriptional regulator (yeaM) ,
predicted transcriptional regulator (yneL) ,
YdeO DNA-binding transcriptional dual regulator ,
antitoxin of the HigB-HigA toxin-antitoxin system ,
predicted DNA-binding transcriptional regulator (yddM) ,
antitoxin of the HicA-HicB toxin-antitoxin system ,
GadW DNA-binding transcriptional dual regulator ,
GadX DNA-binding transcriptional dual regulator ,
putative ARAC-type regulatory protein (eutR) ,
AdiY DNA-binding transcriptional activator ,
predicted DNA-binding transcriptional regulator (yijO) ,
putative ARAC-type regulatory protein (yidL) ,
transmembrane component of cytoskeleton (rodZ) ,
EnvY DNA-binding transcriptional activator ,
predicted DNA-binding transcriptional regulator (ybaO) ,
XylR transcriptional activator ,
MelR DNA-binding transcriptional dual regulator ,
MarA DNA-binding transcriptional dual regulator ,
predicted transcriptional regulator (yiaG) ,
PuuR DNA-binding transcriptional repressor ,
predicted DNA-binding transcriptional regulator (ybaQ) ,
SoxS DNA-binding transcriptional dual regulator ,
AraC ,
RhaS ,
DicA DNA-binding transcriptional dual regulator ,
Ada DNA-binding transcriptional dual regulator ,
AppY DNA-binding transcriptional activator ,
Rob DNA-binding transcriptional activator ,
REP-associated tyrosine transposase (rayT) ,
CRP-cAMP DNA-binding transcriptional dual regulator ,
LldR transcriptional repressor ,
Lon ,
transposase of IS30 (insI-1) ,
DNA-binding protein; inhibition of replication at Ter sites (tus) ,
cell division inhibitor, nucleoid occlusion (slmA) ,
YefM antitoxin of the YoeB-YefM toxin-antitoxin pair and DNA binding transcriptional repressor ,
isovaleryl-CoA dehydrogenase and DNA-binding transcriptional repressor ,
AidB ,
Fis ,
essential cell division protein FtsK ,
AscG DNA-binding transcriptional repressor ,
AllS transcriptional activator ,
AcrR DNA-binding transcriptional repressor ,
macrodomain Ter protein (matP) ,
DinJ-YafQ antitoxin/toxin complex and DNA-binding transcriptional repressor ,
HipAB toxin/antitoxin complex and DNA-binding transcriptional repressor ,
LrhA DNA-binding transcriptional dual regulator ,
ArgP transcriptional activator ,
MqsA antitoxin of the MqsRA toxin-antitoxin system and DNA-binding transcriptional repressor ,
HipB ,
EvgA transcriptional regulator ,
Lrp transcriptional dual regulator ,
AsnC ,
TrpR ,
RhaR transcriptional activator ,
chromosomal replication initiator protein DnaA; DNA-binding transcriptional dual regulator

Unification Links: GO:0043565


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Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 18.5 on Thu Dec 18, 2014, BIOCYC13A.