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Metabolic Modeling Tutorial
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Metabolic Modeling Tutorial
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Escherichia coli K-12 substr. MG1655 Reactions Class: Protein-Ligand-Binding-Reactions

Summary:
This class describes the noncovalent binding of a protein to a ligand (either a small molecule or another macromolecule) to form an instance of Protein-Small-Molecule-Complexes, or the reverse process in which a complex dissociates into its protein and ligand constituent parts.

Parent Classes:
Binding Reactions ,
Protein-Reactions

Instances:
ArgR + L-arginine = ArgR-arg ,
Dan + L-tartrate = Dan-L-tartrate DNA-binding transcriptional activator ,
LldR + (S)-lactate = LldR transcriptional repressor ,
N-acetylneuraminate + NanR = NanR-NANA ,
DnaA + ATP = DnaA-ATP ,
XylR + α-D-xylopyranose = XylR-xylose ,
DksA + ppGpp = DksA-ppGpp ,
NsrR + nitric oxide = NsrR-nitric oxide ,
ZntR + Zn2+ = ZntR transcriptional activator ,
AllR + glyoxylate = AllR-glyox ,
IclR + phosphoenolpyruvate = IclR-PEP ,
Cbl + adenosine 5'-phosphosulfate = Cbl-APS ,
NrdR + Zn2+ = NrdR-Zn2+ DNA-binding transcriptional repressor ,
MprA + 2,4-dinitrophenol = MprA-2,4-dinitrophenol ,
RutR + uracil = RutR-uracil ,
D-fructuronate + UxuR = UxuR-fructuronate ,
RhaS + α-L-rhamnopyranose = RhaS-rhamnose ,
MalT + maltotriose + ATP = MalT-maltotriose-ATP ,
RutR + thymine = RutR-thymine ,
AsnC + L-asparagine = AsnC-L-asparagine ,
RcnR + Co2+ = RcnR-Co2+ ,
NikR + Ni2+ = NikR-Ni transcriptional repressor ,
PurR + hypoxanthine = PurR-hypoxanthine ,
GlpR + sn-glycerol 3-phosphate = GlpR-glycerol-3-phosphate ,
MetJ + adenine = MetJ-adenine ,
AcrR + ethidium = AcrR-ethidium ,
IlvY + (S)-2-acetolactate = IlvY DNA-binding transcriptional dual regulator ,
IclR + pyruvate = IclR transcriptional repressor ,
CynR + cyanate = CynR-Cyanate ,
GutR + D-sorbitol = GutR-sorbitol ,
Cra + fructose 1,6-bisphosphate = Cra-fructose-1,6-bisphosphate ,
ModE + molybdate = ModE-MoO42- ,
CytR + cytidine = CytR-cytidine ,
MntR + Mn2+ = MntR-Mn2+ ,
PrpR + (2S,3S)-2-methylcitrate = PrpR DNA-binding transcriptional dual regulator ,
MelR + melibiose = MelR-melibiose ,
Crp + cyclic-AMP = CRP-cAMP DNA-binding transcriptional dual regulator ,
BirA + biotinyl-5'-adenylate = BirA-bio-5'-AMP ,
allantoin + AllR = AllR-allantoin ,
MetR + L-homocysteine = MetR-L-homocysteine ,
Zur + Zn2+ = Zur transcriptional repressor ,
AllS + (S)-(+)-allantoin = AllS transcriptional activator ,
MarR + salicylate = MarR-salicylate ,
GcvR + glycine = GcvR-gly ,
CaiF + L-carnitine = CaiF-L-carnitine DNA-binding Transcriptional Activator ,
MprA + carbonylcyanide m-chlorophenylhydrazone = MprA-CCCP ,
ArgP + L-lysine = ArgP-lysine ,
UlaR + L-ascorbate 6-phosphate = UlaR-L-ascorbate-6P ,
L-tryptophan + TrpR = TrpR-trp ,
LacI + allolactose = LacI-allolactose ,
Mlc + EIICBGlc = DgsA-EII ,
ArsR + arsenite = ArsR-arsenite ,
Fur + Fe2+ = Fur-Fe+2 ,
MhpR + 3-(3-hydroxyphenyl)propionate = MhpR transcriptional activator ,
GntR + D-gluconate = GntR-gluconate ,
GlcC + glycolate = GlcC-glycolate ,
TreR + α,α-trehalose 6-phosphate = TreR-trehalose 6-phosphate ,
NemR + methylglyoxal = NemR-methylglyoxal ,
IclR transcriptional repressor + glyoxylate = IclR-glyox ,
CysB + O-acetyl-L-serine = CysB transcriptional dual regulator ,
MetJ + S-adenosyl-L-methionine = MetJ-S-adenosylmethionine ,
GalR + β-D-galactose = GalR-galactose ,
ChbR + N,N'-diacetylchitobiose 6'-phosphate = ChbR-N-monoacetylchitobiose-6-phosphate ,
selenocysteyl-tRNA-specific translation elongation factor + L-selenocysteinyl-tRNAsec = SelB-L-selenocysteinyl-tRNAsec ,
CueR + Cu+ = CueR-Cu(I) ,
MtlR + D-mannitol = MtlR-mannitol ,
AraC + α-L-arabinopyranose = AraC-arabinose ,
IdnR + 5-dehydro-D-gluconate = IdnR transcriptional regulator ,
FadR + an acyl-CoA = FadR-acyl-CoA ,
ComR + Cu+ = ComR-Cu(I) ,
NsrR + nitric oxide = NsrR-nitric oxide ,
XapR + xanthosine = XapR transcriptional activator ,
N-acetyl-D-glucosamine 6-phosphate + NagC = NagC-NAcGlc-6-P ,
PdhR + pyruvate = PdhR-pyruvate ,
Lrp + L-leucine = Lrp-leu ,
YqjI + Ni2+ = YqjI-nickel ,
MurR + N-acetyl-β-muramate 6-phosphate = MurR-MurNAc-6-P ,
ArgP + L-arginine = ArgP transcriptional activator ,
Fhl + formate = FhlA ,
BetI + choline = BetI-choline ,
TyrR + L-phenylalanine = TyrR-phe ,
GcvA + glycine = GcvA-gly ,
ArsR + antimonite ion = ArsR-antimonite ,
FucR + L-fuculose 1-phosphate = FucR transcriptional activator ,
HcaR + 3-phenylpropanoate = HcaR transcriptional dual regulator ,
RhaR + α-L-rhamnopyranose = RhaR-rhamnose ,
D-ribose + RbsR = RbsR-ribose ,
GlpR + glycerol = GlpR-glycerol ,
PaaX + phenylacetyl-CoA = PaaX-phenylacetyl-CoA ,
RcnR + Ni2+ = RcnR-nickel ,
NhaR + Na+ = NhaR-Na+ ,
GalS + β-D-galactose = GalS-galactose ,
MetJ + S-methyl-5'-thioadenosine = MetJ-MTA ,
MurR + N-acetyl-β-muramate 6-phosphate = MurR-N-acetylmuramate 6-phosphate ,
DsdC + D-serine = DsdC DNA-binding transcriptional dual regulator ,
alanyl-tRNA synthetase + L-alanine = AlaS-L-alanine ,
TyrR + L-tyrosine = TyrR-tyr ,
ArgR + L-arginine = ArgR-arg ,
Cra + β-D-fructofuranose 1-phosphate = Cra-fructose-1-phosphate ,
MalT + MalK = MalT-MalK ,
TorR + prophage excisionase and response regulator inhibitor = TorR-TorI


Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 18.5 on Sun Nov 23, 2014, BIOCYC13B.