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Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
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Escherichia coli K-12 substr. MG1655 Reactions Class: Protein-Modification Reactions

Summary:
Reactions in which a protein (such as a monomer, a protein complex or a modified protein) is covalently modified.

Parent Classes:
Chemical Reactions ,
Protein-Reactions

Instances:
1.1.1.100: a 3R-hydroxy cis Δ5-dodecenoyl-[acp] + NADP+ ← a 3-oxo-cis5-dodecenoyl-[acp] + NADPH + H+ ,
1.1.1.100: a 3R-hydroxy cis Δ9-hexadecenoyl-[acp] + NADP+ ← a 3-oxo-cis9-hexadecenoyl-[acp] + NADPH + H+ ,
1.1.1.100: a (R)-3-hydroxy-cis-vaccenoyl-[acp] + NADP+ ← a 3-oxo-cis-vaccenoyl-[acp] + NADPH + H+ ,
1.1.1.100: a 3R-hydroxypimeloyl-[acp] methyl ester + NADP+ ← a 3-oxo-pimeloyl-[acp] methyl ester + NADPH + H+ ,
1.1.1.100: a 3R-hydroxy cis Δ7-tetradecenoyl-[acp] + NADP+ ← a 3-oxo-cis7-tetradecenoyl-[acp] + NADPH + H+ ,
1.1.1.100: a 3R-hydroxyglutaryl-[acp] methyl ester + NADP+ ← a 3-oxo-glutaryl-[acp] methyl ester + NADPH + H+ ,
1.2.4.1: pyruvate + a [pyruvate dehydrogenase E2 protein] N6-lipoyl-L-lysine + H+ → a [pyruvate dehydrogenase E2 protein] N6-S-acetyldihydrolipoyl-L-lysine + CO2 ,
1.2.4.2: 2-oxoglutarate + SucB-lipoate = SucB-S-succinyldihydrolipoate + CO2 ,
1.2.4.2: 2-oxoglutarate + a [2-oxoglutarate dehydrogenase E2 protein] N6-lipoyl-L-lysine + H+ → a [2-oxoglutarate dehydrogenase E2 protein] N6-S-succinyldihydrolipoyl-L-lysine + CO2 ,
1.2.7.1: pyruvate + 2 an oxidized ferredoxin + coenzyme A ↔ acetyl-CoA + CO2 + 2 a reduced ferredoxin + H+ ,
1.2.99.-: pyruvate + an oxidized flavodoxin + coenzyme A + H+ ↔ acetyl-CoA + CO2 + a reduced flavodoxin ,
1.3.1.9: a dodecanoyl-[acp] + NAD+ ← a trans dodec-2-enoyl-[acp] + NADH + H+ ,
1.3.1.9: a pimeloyl-[acp] methyl ester + NAD+ ← an enoylpimeloyl-[acp] methyl ester + NADH + H+ ,
1.3.1.9: a cis7-tetradecenoyl-[acp] + NAD+ ← a trans3-cis7-tetradecenoyl-[acp] + NADH + H+ ,
1.3.1.9: a butyryl-[acp] + NAD+ ← a crotonyl-[acp] + NADH + H+ ,
1.3.1.9: a glutaryl-[acp] methyl ester + NAD+ ← an enoylglutaryl-[acp] methyl ester + NADH + H+ ,
1.3.1.9: a decanoyl-[acp] + NAD+ ← a trans2-decenoyl-[acp] + NADH + H+ ,
1.3.1.9: a palmitoyl-[acp] + NAD+ ← a trans hexadecenoyl-[acp] + NADH + H+ ,
1.3.1.9: a cis5-dodecenoyl-[acp] + NAD+ ← a trans3-cis5-dodecenoyl-[acp] + NADH + H+ ,
1.3.1.9: a 2,3,4-saturated fatty acyl-[acp] + NAD+ ← a trans-2-enoyl-[acyl-carrier protein] + NADH + H+ ,
1.3.1.9: an acyl-[acyl-carrier protein] + NAD+ = a trans-2-enoyl-[acyl-carrier protein] + NADH + H+ ,
1.3.1.9: a palmitoleoyl-[acp] + NAD+ ← a trans3-cis9-hexadecenoyl-[acp] + NADH + H+ ,
1.3.1.9: a hexanoyl-[acyl-carrier-protein] + NAD+ ← a trans hex-2-enoyl-[acp] + NADH + H+ ,
1.3.1.39/1.3.1.104/2.3.1.85/2.3.1.86: a 2,3,4-saturated fatty acyl-[acp] + NADP+ ← a trans-2-enoyl-[acyl-carrier protein] + NADPH + H+ ,
1.4.4.2: glycine + a [glycine-cleavage complex H protein] N6-lipoyl-L-lysine + H+ ↔ a [glycine-cleavage complex H protein] N6-aminomethyldihydrolipoyl-L-lysine + CO2 ,
1.6.-.-: hybrid-cluster proteinox + NADH = hybrid-cluster proteinred + NAD+ ,
1.7.2.2: ammonia + 6 an oxidized cytochrome c552 + 2 H2O ← nitrite + 6 a reduced cytochrome c552 + 7 H+ ,
1.7.2.3: trimethylamine + 2 an oxidized c-type cytochrome + H2O = trimethylamine N-oxide + 2 a reduced c-type cytochrome + 3 H+ ,
1.8.1.4: a [lipoyl-carrier protein] N6-dihydrolipoyl-L-lysine + NAD+ = a [lipoyl-carrier protein] N6-lipoyl-L-lysine + NADH + H+ ,
1.8.1.4: a [2-oxoglutarate dehydrogenase E2 protein] N6-dihydrolipoyl-L-lysine + NAD+ → a [2-oxoglutarate dehydrogenase E2 protein] N6-lipoyl-L-lysine + NADH + H+ ,
1.8.1.4: a [pyruvate dehydrogenase E2 protein] N6-dihydrolipoyl-L-lysine + NAD+ → a [pyruvate dehydrogenase E2 protein] N6-lipoyl-L-lysine + NADH + H+ ,
1.8.1.4: a [glycine-cleavage complex H protein] N6-dihydrolipoyl-L-lysine + NAD+ ↔ a [glycine-cleavage complex H protein] N6-lipoyl-L-lysine + NADH + H+ ,
1.8.1.9: a reduced thioredoxin + NADP+ ← an oxidized thioredoxin + NADPH + H+ ,
1.8.4.8: adenosine 3',5'-bisphosphate + sulfite + an oxidized thioredoxin + 2 H+ ← 3'-phosphoadenylyl-sulfate + a reduced thioredoxin ,
1.8.4.12: a [protein]-L-methionine + an oxidized thioredoxin + H2O = a protein-L-methionine-(R)-S-oxide + a reduced thioredoxin ,
1.8.4.13: L-methionine + an oxidized thioredoxin + H2O ← L-methionine-(S)-S-oxide + a reduced thioredoxin ,
1.8.4.14: L-methionine + an oxidized thioredoxin + H2O ← L-methionine-(R)-S-oxide + a reduced thioredoxin ,
1.8.4.-: 2 glutathione + an oxidized glutaredoxin → glutathione disulfide + a reduced glutaredoxin ,
1.10.3.11: 2 an ubiquinol + oxygen → 2 an ubiquinone + 2 H2O ,
1.11.1.15: an organic hydroperoxide + a reduced thioredoxin → an alcohol + an oxidized thioredoxin + H2O ,
1.11.1.16: a reduced thioredoxin + hydrogen peroxide → an oxidized thioredoxin + 2 H2O ,
1.17.4.1: dUDP + an oxidized NrdH glutaredoxin-like protein + H2O ← UDP + a reduced NrdH glutaredoxin-like protein ,
1.17.4.1: dGDP + an oxidized NrdH glutaredoxin-like protein + H2O ← GDP + a reduced NrdH glutaredoxin-like protein ,
1.17.4.1: dUDP + an oxidized thioredoxin + H2O ← UDP + a reduced thioredoxin ,
1.17.4.1: dCDP + an oxidized thioredoxin + H2O ← CDP + a reduced thioredoxin ,
1.17.4.1: dADP + an oxidized thioredoxin + H2O ↔ ADP + a reduced thioredoxin ,
1.17.4.1: dADP + an oxidized NrdH glutaredoxin-like protein + H2O ← ADP + a reduced NrdH glutaredoxin-like protein ,
1.17.4.1: dCDP + an oxidized NrdH glutaredoxin-like protein + H2O ← CDP + a reduced NrdH glutaredoxin-like protein ,
1.17.4.1: dGDP + an oxidized thioredoxin + H2O ← GDP + a reduced thioredoxin ,
1.17.4.1: an oxidized thioredoxin + a 2'-deoxyribonucleoside 5'-diphosphate + H2O ← a reduced thioredoxin + a ribonucleoside diphosphate ,
1.17.4.2: dATP + an oxidized flavodoxin + H2O ← ATP + a reduced flavodoxin ,
1.17.4.2: dUTP + an oxidized flavodoxin + H2O ← UTP + a reduced flavodoxin ,
1.17.4.2: dCTP + an oxidized flavodoxin + H2O ← CTP + a reduced flavodoxin ,
1.17.4.2: dGTP + an oxidized flavodoxin + H2O ← GTP + a reduced flavodoxin ,
1.18.1.2: an oxidized flavodoxin + NADPH + H+ = a reduced flavodoxin + NADP+ ,
1.18.1.3: 2 a reduced [2Fe-2S] ferredoxin + NAD+ + H+ = 2 an oxidized [2Fe-2S] ferredoxin + NADH ,
1.18.1.-: reduced flavorubredoxin + 2 nitric oxide → oxidized flavorubredoxin + nitrous oxide + H2O ,
1.18.1.-: oxidized flavorubredoxin + NADH = reduced flavorubredoxin + NAD+ ,
1.20.4.1: arsenate + a reduced glutaredoxin + H+ ↔ arsenite + an oxidized glutaredoxin + H2O ,
1.97.1.4: pyruvate formate-lyase (inactive) + a reduced flavodoxin + S-adenosyl-L-methionine → 5'-deoxyadenosine + L-methionine + pyruvate formate-lyase / 2-ketobutyrate formate-lyase + an oxidized flavodoxin ,
1.97.1.4: 2-ketobutyrate formate-lyase/pyruvate formate-lyase 4, inactive + a reduced flavodoxin + S-adenosyl-L-methionine → 5'-deoxyadenosine + 2-ketobutyrate formate-lyase / pyruvate formate-lyase 4 + an oxidized flavodoxin ,
2.1.1.63: a [protein]-L-cysteine + a DNA containing 6-O-methylguanine = a [protein]-S-methyl-L-cysteine + DNA (without 6-O-methylguanine) ,
2.1.1.80: a [protein]-α-L-glutamate + S-adenosyl-L-methionine → a [protein]-L-glutamate-O5-methyl-ester + S-adenosyl-L-homocysteine ,
2.1.1.-: S-adenosyl-L-methionine + TsrgluS-adenosyl-L-homocysteine + Tsrglu-Me ,
2.1.1.-: S-adenosyl-L-methionine + TapgluS-adenosyl-L-homocysteine + Tapglu-Me ,
2.1.1.-: S-adenosyl-L-methionine + a protein = a methylated protein ,
2.1.1.-: S-adenosyl-L-methionine + TargluS-adenosyl-L-homocysteine + Targlu-Me ,
2.1.1.-: S-adenosyl-L-methionine + TrggluS-adenosyl-L-homocysteine + Trgglu-Me ,
2.1.2.10: a [glycine-cleavage complex H protein] N6-aminomethyldihydrolipoyl-L-lysine + a tetrahydrofolate ↔ a [glycine-cleavage complex H protein] N6-dihydrolipoyl-L-lysine + a 5,10-methylene-tetrahydrofolate + ammonium ,
2.1.3.-: carbamoyl-phosphate + ATP + HypE → HypE-S-carboxamide + AMP + diphosphate + phosphate ,
2.3.1.12: acetyl-CoA + a [pyruvate dehydrogenase E2 protein] N6-dihydrolipoyl-L-lysine ← a [pyruvate dehydrogenase E2 protein] N6-S-acetyldihydrolipoyl-L-lysine + coenzyme A ,
2.3.1.15: sn-glycerol 3-phosphate + an acyl-[acyl-carrier protein] → a 1-acyl-sn-glycerol 3-phosphate + a holo-[acyl-carrier protein] ,
2.3.1.40: an acyl-[acyl-carrier protein] + a 1-lyso-2-acyl-sn-glycero-3-phosphoethanolamine ↔ a holo-[acyl-carrier protein] + an L-1-phosphatidyl-ethanolamine ,
2.3.1.41: a glutaryl-[acp] methyl ester + a malonyl-[acp] + H+ → a 3-oxo-pimeloyl-[acp] methyl ester + CO2 + a holo-[acyl-carrier protein] ,
2.3.1.41: a cis5-dodecenoyl-[acp] + a malonyl-[acp] + H+ → a 3-oxo-cis7-tetradecenoyl-[acp] + a holo-[acyl-carrier protein] + CO2 ,
2.3.1.41: a myristoyl-[acp] + a malonyl-[acp] + H+ → a 3-oxo-palmitoyl-[acp] + CO2 + a holo-[acyl-carrier protein] ,
2.3.1.41: a butyryl-[acp] + a malonyl-[acp] + H+ → a 3-oxo-hexanoyl-[acp] + CO2 + a holo-[acyl-carrier protein] ,
2.3.1.41: a hexanoyl-[acyl-carrier-protein] + a malonyl-[acp] + H+ → a 3-oxo-octanoyl-[acp] + CO2 + a holo-[acyl-carrier protein] ,
2.3.1.41: a malonyl-[acp] methyl ester + a malonyl-[acp] + H+ → a 3-oxo-glutaryl-[acp] methyl ester + CO2 + a holo-[acyl-carrier protein] ,
2.3.1.41: an octanoyl-[acp] + a malonyl-[acp] + H+ → a 3-oxo-decanoyl-[acp] + CO2 + a holo-[acyl-carrier protein] ,
2.3.1.41: a cis7-tetradecenoyl-[acp] + a malonyl-[acp] + H+ → a 3-oxo-cis9-hexadecenoyl-[acp] + a holo-[acyl-carrier protein] + CO2 ,
2.3.1.41: an acyl-[acyl-carrier protein] + a malonyl-[acp] + H+ = a 3-oxoacyl-[acp] + CO2 + a holo-[acyl-carrier protein] ,
2.3.1.41: a decanoyl-[acp] + a malonyl-[acp] + H+ → a 3-oxo-dodecanoyl-[acp] + CO2 + a holo-[acyl-carrier protein] ,
2.3.1.49: [a holo citrate lyase acyl-carrier protein] + S-acetyl phosphopantetheine → an acetyl-[holo citrate lyase acyl-carrier protein] + 4'-phosphopantetheine ,
2.3.1.51: 1-palmitoylglycerol 3-phosphate + a palmitoyl-[acp] → dipalmitoyl phosphatidate + a holo-[acyl-carrier protein] ,
2.3.1.51: a 2,3,4-saturated 2-lysophosphatidate + a 2,3,4-saturated fatty acyl-[acp] = a 2,3,4-saturated L-phosphatidate + a holo-[acyl-carrier protein] ,
2.3.1.51: a 1-acyl-sn-glycerol 3-phosphate + an acyl-[acyl-carrier protein] → a 1,2-diacyl-sn-glycerol 3-phosphate + a holo-[acyl-carrier protein] ,
2.3.1.61: succinyl-CoA + a [2-oxoglutarate dehydrogenase E2 protein] N6-dihydrolipoyl-L-lysine → a [2-oxoglutarate dehydrogenase E2 protein] N6-S-succinyldihydrolipoyl-L-lysine + coenzyme A ,
2.3.1.86: a dodecanoyl-[acp] + a malonyl-[acp] + H+ → a 3-oxo-myristoyl-[acp] + CO2 + a holo-[acyl-carrier protein] ,
2.3.1.86/4.2.1.59: a (3R)-3-hydroxyacyl-[acyl-carrier protein] → a trans-2-enoyl-[acyl-carrier protein] + H2O ,
2.3.1.86: a malonyl-[acp] + a 2,3,4-saturated fatty acyl-[acp] + H+ → a holo-[acyl-carrier protein] + a 3-oxoacyl-[acp] + CO2 ,
2.3.1.86/4.2.1.59: a (R)-3-hydroxybutanoyl-[acp] → a crotonyl-[acp] + H2O ,
2.3.1.86: an (R)-3-hydroxydecanoyl-[acp] + NADP+ ← a 3-oxo-decanoyl-[acp] + NADPH + H+ ,
2.3.1.86/4.2.1.59: a (R)-3-hydroxydodecanoyl-[acp] → a trans dodec-2-enoyl-[acp] + H2O ,
2.3.1.86/4.2.1.59: an (3R)-3-hydroxymyristoyl-[acp] → a trans tetradec-2-enoyl-[acp] + H2O ,
2.3.1.86: a malonyl-[acp] + an acetyl-[acp] + H+ → a holo-[acyl-carrier protein] + an acetoacetyl-[acp] + CO2 ,
2.3.1.86: an acetoacetyl-[acp] + NADPH + H+ → a (R)-3-hydroxybutanoyl-[acp] + NADP+ ,
2.3.1.86/4.2.1.59: an (R)-3-hydroxyhexanoyl-[acp] → a trans hex-2-enoyl-[acp] + H2O ,
2.3.1.86/4.2.1.59: an (R)-3-hydroxydecanoyl-[acp] → a trans2-decenoyl-[acp] + H2O ,
2.3.1.86/4.2.1.59: an (R)-3-hydroxypalmitoyl-[acp] → a trans hexadecenoyl-[acp] + H2O ,
2.3.1.86: a (R)-3-hydroxydodecanoyl-[acp] + NADP+ ← a 3-oxo-dodecanoyl-[acp] + NADPH + H+ ,
1.3.1.9: an octanoyl-[acp] + NAD+ ← a trans oct-2-enoyl-[acp] + NADH + H+ ,
2.3.1.86: a holo-[acyl-carrier protein] + malonyl-CoA ↔ a malonyl-[acp] + coenzyme A ,
2.3.1.86: an (3R)-3-hydroxymyristoyl-[acp] + NADP+ ← a 3-oxo-myristoyl-[acp] + NADPH + H+ ,
1.3.1.9: a myristoyl-[acp] + NAD+ ← a trans tetradec-2-enoyl-[acp] + NADH + H+ ,
2.3.1.86: a (3R)-3-hydroxyacyl-[acyl-carrier protein] + NADP+ ← a 3-oxoacyl-[acp] + NADPH + H+ ,
2.3.1.86: an (R)-3-hydroxypalmitoyl-[acp] + NADP+ ← a 3-oxo-palmitoyl-[acp] + NADPH + H+ ,
1.8.4.11: a [protein]-L-methionine + an oxidized thioredoxin + H2O ← a protein-L-methionine-(S)-S-oxide + a reduced thioredoxin ,
2.3.1.86: an (R)-3-hydroxyhexanoyl-[acp] + NADP+ ← a 3-oxo-hexanoyl-[acp] + NADPH + H+ ,
2.3.1.86: a (R)-3-hydroxyoctanoyl-[acp] + NADP+ ← a 3-oxo-octanoyl-[acp] + NADPH + H+ ,
1.3.1.9: a cis-vaccen-2-enoyl-[acp] + NADH + H+ → a cis-vaccenoyl-[acp] + NAD+ ,
2.3.1.86/4.2.1.59: a (R)-3-hydroxyoctanoyl-[acp] → a trans oct-2-enoyl-[acp] + H2O ,
2.3.1.86: a holo-[acyl-carrier protein] + acetyl-CoA ↔ an acetyl-[acp] + coenzyme A ,
2.3.1.128: a ribosomal protein-L-alanine + acetyl-CoA → a ribosomal protein-N-acetyl-L-alanine + coenzyme A ,
2.3.1.129: an (3R)-3-hydroxymyristoyl-[acp] + UDP-N-acetyl-α-D-glucosamine → UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine + a holo-[acyl-carrier protein] ,
2.3.1.179: a palmitoleoyl-[acp] + a malonyl-[acp] + H+ → a 3-oxo-cis-vaccenoyl-[acp] + CO2 + a holo-[acyl-carrier protein] ,
2.3.1.180: acetyl-CoA + a malonyl-[acp] + H+ → an acetoacetyl-[acp] + CO2 + coenzyme A ,
2.3.1.181: an octanoyl-[acp] + a [lipoyl-carrier protein]-L-lysine → a [lipoyl-carrier protein] N6-octanoyl-L-lysine + a holo-[acyl-carrier protein] + H+ ,
2.3.1.191: an (3R)-3-hydroxymyristoyl-[acp] + UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine → UDP-2,3-bis[O-(3R)-3-hydroxymyristoyl]-α-D-glucosamine + a holo-[acyl-carrier protein] + H+ ,
2.3.1.-: a malonyl-[acp] + H+ → an acetyl-[acp] + CO2 ,
2.3.1.-: a myristoyl-[acp] + (KDO)2-(lauroyl)-lipid IVA → (KDO)2-lipid A + a holo-[acyl-carrier protein] ,
2.3.1.-: a myristoyl-[acp] + KDO2-(palmitoleoyl)-lipid IVA → (KDO)2-lipid A, cold adapted + a holo-[acyl-carrier protein] ,
2.3.1.-: 50S ribosomal subunit protein L12 + acetyl-CoA → 50S ribosomal subunit protein L7 + coenzyme A ,
2.3.1.-: a palmitoleoyl-[acp] + α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IVA → KDO2-(palmitoleoyl)-lipid IVA + a holo-[acyl-carrier protein] ,
2.3.1.-: a dodecanoyl-[acp] + α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IVA → (KDO)2-(lauroyl)-lipid IVA + a holo-[acyl-carrier protein] ,
2.3.2.2: a 5-L-glutamyl-[peptide][periplasmic space] + an amino acid[periplasmic space] = a 5-L-glutamyl-amino acid[periplasmic space] + a peptide[periplasmic space] ,
2.5.1.-: EntB isochorismatase / aryl-carrier protein + 2,3-dihydroxybenzoate + ATP = aryl-EntB + AMP + diphosphate ,
2.7.1.69: a [PTS enzyme I]-Nπ-phospho-L-histidine + a sugar[periplasmic space] → a [PTS enzyme I]-L-histidine + a sugar phosphate[cytosol] ,
2.7.3.9: phosphoenolpyruvate + PtsI = pyruvate + PtsI-Phis189 ,
2.7.3.9: phosphoenolpyruvate + a [PTS enzyme I]-L-histidine → pyruvate + a [PTS enzyme I]-Nπ-phospho-L-histidine ,
2.7.3.9: phosphoenolpyruvate + PtsP = pyruvate + PtsP-phosphorylated ,
2.7.7.42: [a glutamine synthase] + ATP → adenylyl-[glutamine synthase] + diphosphate ,
2.7.7.59: GlnK + UTP → uridylyl-[GlnK] + diphosphate ,
2.7.7.59: a PII protein + UTP → a uridylylated PII protein + diphosphate ,
2.7.7.61: 2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA + [an apo citrate-lyase acyl-carrier protein] → [a holo citrate lyase acyl-carrier protein] + diphosphate ,
2.7.7.63: lipoyl-adenylate + [glycine cleavage system lipoyl-carrier protein]-L-lysine = a [glycine-cleavage complex H protein] N6-lipoyl-L-lysine + AMP + 2 H+ ,
2.7.7.63: lipoyl-adenylate + a [lipoyl-carrier protein]-L-lysine → a [lipoyl-carrier protein] N6-lipoyl-L-lysine + AMP + 2 H+ ,
2.7.7.63: [glycine cleavage system lipoyl-carrier protein]-L-lysine + ATP + (R)-lipoate → AMP + a [glycine-cleavage complex H protein] N6-lipoyl-L-lysine + diphosphate + H+ ,
2.7.7.73: a ThiS sulfur-carrier protein + ATP + H+ → a carboxy-adenylated-[ThiS sulfur-carrier protein] + diphosphate ,
2.7.7.80: a small subunit of molybdopterin synthase + ATP → a carboxy-adenylated small subunit of molybdopterin synthase + diphosphate ,
2.7.8.7: an apo-[acp] + coenzyme A → adenosine 3',5'-bisphosphate + a holo-[acyl-carrier protein] ,
2.7.11.1: a [protein]-(L-serine/L-threonine) + ATP → a [protein] (L-serine/L-threonine) phosphate + ADP + H+ ,
2.7.11.5: an isocitrate dehydrogenase + ATP ↔ ADP + a phosphorylated isocitrate dehydrogenase ,
2.7.11.-: serine/threonine kinase HipA + ATP → phosphorylated serine/threonine kinase HipA + ADP ,
2.8.1.7: a ThiI sulfur-carrier protein + L-cysteine = an S-sulfanyl-[ThiI sulfur-carrier protein] + L-alanine ,
2.8.1.8: a [lipoyl-carrier protein] N6-octanoyl-L-lysine + 2 S-adenosyl-L-methionine + 2 a sulfurated [sulfur carrier] → a [lipoyl-carrier protein] N6-lipoyl-L-lysine + 2 5'-deoxyadenosine + 2 L-methionine + 2 an unsulfurated [sulfur carrier] ,
2.8.1.10: 1-deoxy-D-xylulose 5-phosphate + 2-iminoacetate + a thiocarboxy-adenylated-[ThiS-Protein] → 2-[(2R,5Z)-(2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate + a ThiS sulfur-carrier protein + 2 H2O ,
2.8.1.11: a carboxy-adenylated small subunit of molybdopterin synthase + an [L-cysteine desulfurase] L-cysteine persulfide → a thiocarboxylated small subunit of molybdopterin synthase + an [L-cysteine desulfurase]-L-cysteine + AMP ,
2.8.1.-: a reduced thioredoxin + thiosulfate = an oxidized thioredoxin + sulfite + hydrogen sulfide + H+ ,
2.8.3.10: an acetyl-[holo citrate lyase acyl-carrier protein] + citrate → a citryl-[holo citrate lyase acyl-carrier protein] + acetate ,
2.8.4.4: a [ribosomal protein S12] L-aspartate89 + 2 S-adenosyl-L-methionine + a sulfurated [sulfur carrier] → a [ribosomal protein S12] 3-methylthio-L-aspartate89 + S-adenosyl-L-homocysteine + an unsulfurated [sulfur carrier] + L-methionine + 5'-deoxyadenosine + H+ ,
3.1.1.61: a [protein]-L-glutamate-O5-methyl-ester + H2O → a [protein]-α-L-glutamate + methanol + H+ ,
3.1.1.85: a pimeloyl-[acp] methyl ester + H2O → a pimeloyl-[acp] + methanol + H+ ,
3.1.1.-: Targlu-Me + H2O → methanol + Targlu ,
3.1.1.-: Trgglu-Me + H2O → methanol + Trgglu ,
3.1.1.-: Tsrglu-Me + H2O → methanol + Tsrglu ,
3.1.1.-: Tapglu-Me + H2O → methanol + Tapglu ,
3.1.2.14: a palmitoleoyl-[acp][periplasmic space] + H2O[periplasmic space] → palmitoleate[periplasmic space] + a holo-[acyl-carrier protein][periplasmic space] + H+[periplasmic space] ,
3.1.2.14: a palmitoyl-[acp] + H2O → palmitate + a holo-[acyl-carrier protein] + H+ ,
3.1.2.14: a cis-vaccenoyl-[acp][periplasmic space] + H2O[periplasmic space]cis-vaccenate[periplasmic space] + a holo-[acyl-carrier protein][periplasmic space] + H+[periplasmic space] ,
3.1.2.21: a dodecanoyl-[acp] + H2O → a holo-[acyl-carrier protein] + laurate + H+ ,
3.1.3.16: a [protein] (L-serine/L-threonine) phosphate + H2O → a [protein]-(L-serine/L-threonine) + phosphate ,
3.1.3.48: a [protein]-L-tyrosine phosphate + H2O → a [protein]-L-tyrosine + phosphate ,
3.1.3.-: ArcB sensory histidine kinase - his717 phosphorylated + H2O → ArcB sensory histidine kinase + phosphate ,
3.1.3.-: a phosphorylated isocitrate dehydrogenase + H2O → an isocitrate dehydrogenase + phosphate ,
3.1.4.14: a holo-[acyl-carrier protein] + H2O → an apo-[acp] + 4'-phosphopantetheine ,
3.4.11.1: amino acids(n) + H2O → a standard α amino acid + amino acids(n-1) ,
3.4.11.23: a protein + H2O → a standard α amino acid + a peptide ,
3.5.1.28: a peptidoglycan + H2O ↔ N-acetylmuramate + a peptide ,
3.5.1.44: a [protein]-L-glutamine + H2O → a [protein]-α-L-glutamate + ammonium ,
3.5.1.-: Trggln + H2O → ammonia + Trgglu ,
3.5.1.-: Tsrgln + H2O → ammonia + Tsrglu ,
3.5.1.-: Tapgln + H2O → ammonia + Tapglu ,
3.5.1.-: Targln + H2O → ammonia + Targlu ,
4.1.3.34: a citryl-[holo citrate lyase acyl-carrier protein] → oxaloacetate + an acetyl-[holo citrate lyase acyl-carrier protein] ,
4.2.1.59: a 3R-hydroxy cis Δ9-hexadecenoyl-[acp] → a trans3-cis9-hexadecenoyl-[acp] + H2O ,
4.2.1.59: a (R)-3-hydroxy-cis-vaccenoyl-[acp] → a cis-vaccen-2-enoyl-[acp] + H2O ,
4.2.1.59: a 3R-hydroxypimeloyl-[acp] methyl ester → an enoylpimeloyl-[acp] methyl ester + H2O ,
4.2.1.59: a 3R-hydroxy cis Δ7-tetradecenoyl-[acp] → a trans3-cis7-tetradecenoyl-[acp] + H2O ,
4.2.1.59: a 3R-hydroxyglutaryl-[acp] methyl ester → an enoylglutaryl-[acp] methyl ester + H2O ,
4.2.1.59: a 3R-hydroxy cis Δ5-dodecenoyl-[acp] → a trans3-cis5-dodecenoyl-[acp] + H2O ,
6.2.1.20: octanoate + a holo-[acyl-carrier protein] + ATP → an octanoyl-[acp] + AMP + diphosphate ,
6.2.1.20: ATP + a holo-[acyl-carrier protein] + a fatty acid → AMP + a 2,3,4-saturated fatty acyl-[acp] + diphosphate ,
6.2.1.22: [a holo citrate lyase acyl-carrier protein] + acetate + ATP → an acetyl-[holo citrate lyase acyl-carrier protein] + AMP + diphosphate ,
6.3.4.14: a biotinylated [BCCP dimer] + hydrogen carbonate + ATP → a carboxylated-biotinylated [BCCP dimer] + ADP + phosphate + H+ ,
6.3.4.15: a [biotin-carboxyl-carrier protein monomer] + biotin + ATP → a biotinylated [BCCP monomer] + AMP + diphosphate ,
6.4.1.2: ATP + acetyl-CoA + a carboxylated-biotinylated [BCCP dimer] + H2O → malonyl-CoA + a biotinylated [BCCP dimer] + ADP + phosphate + H+ ,
ATP + NtrB → ADP + NtrB-Phis ,
CpxR + CpxA sensory histidine kinase - phosphorylated[inner membrane] → CpxR-Pasp DNA-binding transcriptional dual regulator + CpxA[inner membrane] ,
D-allose + AlsR = AlsR-allose ,
ATP + SucB + (R)-lipoate = AMP + SucB-lipoate + diphosphate ,
a protein-Nπ-phospho-L-histidine + 2-phospho-D-glycerate = a [protein]-L-histidine + 2,3-diphospho-D-glycerate ,
ATP + NarQ[inner membrane] → ADP + NarQ sensory histidine kinase - phosphorylated[inner membrane] ,
ZraS[inner membrane] + ATP → ZraS-Phis254[inner membrane] + ADP ,
EvgA + EvgS-Phis1137[inner membrane] → EvgS[inner membrane] + EvgA-Pasp ,
UhpB[inner membrane] + ATP → UhpB-Phis[inner membrane] + ADP ,
a reduced thioredoxin + L-cystine → an oxidized thioredoxin + 2 L-cysteine ,
NarX sensory histidine kinase - phosphorylated[inner membrane] + NarL → NarX[inner membrane] + NarL-Pasp59 ,
apo-serine activating enzyme + coenzyme A → adenosine 3',5'-bisphosphate + aryl carrier protein / L-seryl-AMP synthase ,
OmpR + BarA sensory histidine kinase - his 861phosphorylated = OmpR-P + BarA ,
EvgS-Pasp → EvgS-Phis1137 ,
a non-methylated ribosomal protein L11 + S-adenosyl-L-methionine → a methylated ribosomal protein L11 + S-adenosyl-L-homocysteine ,
trimethylamine N-oxide + periplasmic sensory protein associated with the TorRS two-component regulatory system = TorT-TMAO ,
BaeR + BaeS sensory histidine kinase - phosphorylated[inner membrane] → BaeR-Pasp61 + BaeS[inner membrane] ,
BarA sensory histidine kinase - asp718 phosphorylated[inner membrane] → Modified BarA sensory histidine kinase[inner membrane] ,
an S-sulfanyl-[ThiI sulfur-carrier protein] + a carboxy-adenylated-[ThiS sulfur-carrier protein] → a thiocarboxy-adenylated-[ThiS-Protein] + a ThiI sulfur-carrier protein + AMP ,
a reduced d-type cytochrome + 2 H+ + oxygen → a d-type cytochrome + H2O ,
ThiS-COAMP + L-cysteine = ThiS-COSH + L-alanine + AMP ,
aryl-EntB + H2O → EntB isochorismatase / aryl-carrier protein + 2,3-dihydroxybenzoate ,
ArcB sensory histidine kinase - his292 phosphorylated + ArcA → ArcA-Pasp54 + ArcB sensory histidine kinase ,
NtrB-Phis + NtrC → NtrB sensory histidine kinase + NtrC-Pasp ,
a prolipoprotein + an L-1-phosphatidyl-glycerol = a diacylglycerol prolipoprotein + sn-glycerol 1-phosphate ,
RstB[inner membrane] + ATP → RstB sensory histidine kinase - phosphorylated[inner membrane] + ADP ,
PhoB + PhoR sensory histidine kinase - phosphorylated[inner membrane] → PhoR[inner membrane] + PhoB-Pasp53 ,
NtrB-Phis + NtrC → NtrB + NtrC-Pasp ,
CreC sensory histidine kinase - phosphorylated[inner membrane] + CreB → CreB-Pasp54 + CreC[inner membrane] ,
CheB-Pasp = CheB + phosphate ,
regulator of RpoS + ArcB sensory histidine kinase - his717 phosphorylated → RssB-P + ArcB sensory histidine kinase ,
TorS sensory histidine kinase - his850 phosphorylated[inner membrane] + TorR → TorS sensory histidine kinase[inner membrane] + TorR-Pasp ,
a [protein]-L-histidine + 2,3-diphospho-D-glycerate = a protein-Nπ-phospho-L-histidine + 3-phospho-D-glycerate ,
ATP + NarX[inner membrane] → ADP + NarX sensory histidine kinase - phosphorylated[inner membrane] ,
a reduced flavoprotein (FADH2) + an oxidized iron-sulfur protein → an oxidized flavoprotein (FAD) + a reduced iron-sulfur protein + 2 H+ ,
β-D-glucose 6-phosphate + UhpC = UhpC-glucose-6-P ,
uridylyl-[GlnK] → UMP + GlnK ,
RcsB-P + phosphate = RcsB-P-phosphate ,
EnvZ-Phis[inner membrane] + OmpR → EnvZ sensory histidine kinase[inner membrane] + OmpR-P ,
protein involved in threonylcarbamoyladenosine biosynthesis → TsaD degradation products ,
UvrY + Modified BarA sensory histidine kinase[inner membrane] → UvrY-Pasp54 + BarA[inner membrane] ,
[glycine cleavage system lipoyl-carrier protein]-L-lysine + a lipoyl-[acp] = a [glycine-cleavage complex H protein] N6-lipoyl-L-lysine + a holo-[acyl-carrier protein] + H+ ,
a reduced thioredoxin + D-cystine → an oxidized thioredoxin + 2 D-cysteine ,
ATP + RcsC[inner membrane] → ADP + RcsC-Phis[inner membrane] ,
NarQ sensory histidine kinase - phosphorylated[inner membrane] + NarP → NarQ[inner membrane] + NarP-Pasp59 ,
BasS sensory histidine kinase - phosphorylated[inner membrane] + BasR → BasS[inner membrane] + BasR-Pasp51 ,
UhpA + UhpB-Phis → UhpA-Pasp + UhpB ,
an oxidized glutaredoxin + 2 e- = a reduced glutaredoxin ,
D-fructose[periplasmic space] + PtsI-Phis189 → D-fructose 1-phosphate[cytosol] + PtsI ,
BarA sensory histidine kinase - his302 phosphorylated → BarA sensory histidine kinase - asp718 phosphorylated ,
CusS sensory histidine kinase - phosphorylated[inner membrane] + CusR → CusS[inner membrane] + CusR-Pasp51 ,
a reduced b-type cytochrome + an oxidized d-type cytochrome → an oxidized b-type cytochrome + a reduced d-type cytochrome ,
ArcB sensory histidine kinase[inner membrane] + ATP → ArcB sensory histidine kinase - his292 phosphorylated[inner membrane] + ADP ,
CheA + ATP → CheA-P + ADP ,
CheY-ac + NAD+ + H2O → CheY + 3''-O-acetyl-ADP-ribose + nicotinamide ,
a cis3-decenoyl-[acp] + a malonyl-[acp] + H+ → a 3-oxo-cis5-dodecenoyl-[acp] + a holo-[acyl-carrier protein] + CO2 ,
2 a biotinylated [BCCP monomer] → a biotinylated [BCCP dimer] ,
PhoP + PhoQ sensory histidine kinase - phosphorylated[inner membrane] → PhoP-Pasp51 + PhoQ[inner membrane] ,
a reduced flavoprotein (FMNH2) + an iron-sulfur protein → an oxidized flavoprotein (FMN) + a reduced iron-sulfur protein + 2 H+ ,
BglG + HPr-Phis15 = HPr + BglG-Phis208 ,
a [lipoyl-carrier protein]-L-lysine + octanoate + ATP → a [lipoyl-carrier protein] N6-octanoyl-L-lysine + AMP + diphosphate + H+ ,
a protein-Nπ-phospho-L-histidine + 2/3-phospho-D-glycerate = a [protein]-L-histidine + 2,3-diphospho-D-glycerate ,
a reduced flavodoxin + a ribonucleoside triphosphate = an oxidized flavodoxin + a deoxyribonucleoside triphosphate + H2O ,
NtrC-Pasp + H2O → NtrC + phosphate ,
an oxidized flavoprotein (FAD) + NAD(P)H → a reduced flavoprotein (FADH2) + NAD(P)+ ,
uridylyl-[protein PII] → PII + UMP ,
CpxA[inner membrane] + ATP → CpxA sensory histidine kinase - phosphorylated[inner membrane] + ADP ,
YpdA[inner membrane] + ATP → YpdA-Phis371[inner membrane] + ADP ,
ATP + a peptide[periplasmic space] + H2O → ADP + a peptide[cytosol] + phosphate ,
RcsC-Phis → RcsC-Pasp ,
regulator of RpoS + acetyl phosphate = RssB-P + acetate ,
ATP + AceF + (R)-lipoate = AMP + AceF-lipoate + diphosphate ,
a [protein]-L-histidine + 2,3-diphospho-D-glycerate = a protein-Nπ-phospho-L-histidine + 2/3-phospho-D-glycerate ,
an iron-sulfur protein + 2 e- = a reduced iron-sulfur protein ,
NarX sensory histidine kinase - phosphorylated[inner membrane] + NarP → NarX[inner membrane] + NarP-Pasp59 ,
ZraR + ZraS-Phis254[inner membrane] → ZraR-Pasp56 + ZraS[inner membrane] ,
EnvZ sensory histidine kinase[inner membrane] + ATP → ADP + EnvZ-Phis[inner membrane] ,
KdpD sensory histidine kinase - phosphorylated[inner membrane] + KdpE → KdpE-Pasp + KdpD[inner membrane] ,
NarQ sensory histidine kinase - phosphorylated[inner membrane] + NarL → NarQ[inner membrane] + NarL-Pasp59 ,
methyl α-D-glucoside[periplasmic space] + HPr-Phis15 → HPr + methyl α-D-glucoside 6-phosphate[cytosol] ,
peptidoglycan tetrapeptide, glycan chain 1 + murein lipoprotein → D-alanine + peptidoglycan tripeptide-Lpp crosslink ,
a ThiS-ThiI acyl-disulfide + a ThiF protein = a ThiS-ThiF acyl-disulfide + a ThiI sulfur-carrier protein ,
DcuS[inner membrane] + ATP → DcuS sensory histidine kinase - phosphorylated[inner membrane] + ADP ,
an oxidized thioredoxin + 2 e- = a reduced thioredoxin ,
AtoS-P[inner membrane] + AtoC → AtoS[inner membrane] + AtoC-P ,
CheY + CheA-P → CheY-Pasp + CheA ,
PhoQ[inner membrane] + ATP → PhoQ sensory histidine kinase - phosphorylated[inner membrane] + ADP ,
an oxidized flavoprotein (FMN) + NAD(P)H → a reduced flavoprotein (FMNH2) + NAD(P)+ ,
a reduced b-type cytochrome + an oxidized electron acceptor → an oxidized b-type cytochrome + a reduced electron acceptor ,
ThiS protein + ATP = ThiS-COAMP + diphosphate ,
YehU[inner membrane] + ATP[cytosol] → YehU-Phis382[inner membrane] + ADP[cytosol] ,
ArcA + ArcB sensory histidine kinase - his717 phosphorylated[inner membrane] → ArcA-Pasp54 + ArcB sensory histidine kinase[inner membrane] ,
QseB + QseC sensory histidine kinase - phosphorylated[inner membrane] → QseB-Pasp51 + QseC[inner membrane] ,
RstA + RstB sensory histidine kinase - phosphorylated[inner membrane] → RstA-Pasp52 + RstB[inner membrane] ,
CreC sensory histidine kinase - phosphorylated + PhoB = CreC + PhoB-Pasp53 ,
DsbAoxidised[periplasmic space] + 2 D-cysteine[periplasmic space] = D-cystine[periplasmic space] + DsbAreduced[periplasmic space] ,
DsbAoxidised[periplasmic space] + 2 L-cysteine[periplasmic space] = L-cystine[periplasmic space] + DsbAreduced[periplasmic space] ,
a diacylglycerol prolipoprotein[periplasmic space] + a phospholipid[periplasmic space] = murein lipoprotein[periplasmic space] + a lysophospholipid[periplasmic space] ,
ATP + NtrB sensory histidine kinase → ADP + NtrB-Phis ,
protein chain elongation factor EF-P + D-β-lysine + ATP = protein chain elongation factor EF-P, β-lysyl-Lys34 + AMP + diphosphate ,
ATP + TorS sensory histidine kinase[inner membrane] → ADP + TorS sensory histidine kinase - his443 phosphorylated[inner membrane] ,
AtoS[inner membrane] + ATP → AtoS-P[inner membrane] + ADP ,
EvgS[inner membrane] + ATP → EvgS-Phis721[inner membrane] + ADP ,
CusS[inner membrane] + ATP → CusS sensory histidine kinase - phosphorylated[inner membrane] + ADP ,
QseC[inner membrane] + ATP → QseC sensory histidine kinase - phosphorylated[inner membrane] + ADP ,
GlrK[inner membrane] + ATP → GlrK sensory histidine kinase - phosphorylated[inner membrane] + ADP ,
ATP + DpiB[inner membrane] → ADP + DpiB sensory histidine kinase - phosphorylated[inner membrane] ,
cyclic pyranopterin phosphate + MoaD-S = molybdopterin synthase small subunit + molybdopterin ,
L-ascorbate + 2 an oxidized c-type cytochrome → L-dehydro-ascorbate + 2 a reduced c-type cytochrome + H+ ,
a reduced hydrogenase 3 + 2 H+ ↔ an oxidized hydrogenase 3 + H2 ,
formate + an oxidized hydrogenase 3 = CO2 + a reduced hydrogenase 3 + H+ ,
PhoR[inner membrane] + ATP → ADP + PhoR sensory histidine kinase - phosphorylated[inner membrane] ,
ATP + KdpD[inner membrane] → KdpD sensory histidine kinase - phosphorylated[inner membrane] + ADP ,
adenylyl-[glutamine synthase] + phosphate → [a glutamine synthase] + ADP ,
isochorismatase / aryl-carrier protein + coenzyme A → EntB isochorismatase / aryl-carrier protein + adenosine 3',5'-bisphosphate ,
ATP + CreC[inner membrane] → ADP + CreC sensory histidine kinase - phosphorylated[inner membrane] ,
CheY-Pasp + H2O → CheY + phosphate ,
ATP + BasS[inner membrane] → ADP + BasS sensory histidine kinase - phosphorylated[inner membrane] ,
BarA[inner membrane] + ATP → BarA sensory histidine kinase - his302 phosphorylated[inner membrane] + ADP ,
BaeS[inner membrane] + ATP → BaeS sensory histidine kinase - phosphorylated[inner membrane] + ADP


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Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 18.5 on Sat Dec 20, 2014, BIOCYC14A.