Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
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Escherichia coli K-12 substr. MG1655 Reactions Class: Protein-Modification Reactions

Summary:
Reactions in which a protein (such as a monomer, a protein complex or a modified protein) is covalently modified.

Parent Classes:
Chemical Reactions ,
Protein-Reactions

Instances:
1.1.1.100: a 3R-hydroxy cis Δ5-dodecenoyl-[acp] + NADP+ ← a 3-oxo-cis5-dodecenoyl-[acp] + NADPH + H+ ,
1.1.1.100: a 3R-hydroxy cis Δ9-hexadecenoyl-[acp] + NADP+ ← a 3-oxo-cis9-hexadecenoyl-[acp] + NADPH + H+ ,
1.1.1.100: a (R)-3-hydroxy-cis-vaccenoyl-[acp] + NADP+ ← a 3-oxo-cis-vaccenoyl-[acp] + NADPH + H+ ,
1.1.1.100: a 3R-hydroxypimeloyl-[acp] methyl ester + NADP+ ← a 3-oxo-pimeloyl-[acp] methyl ester + NADPH + H+ ,
1.1.1.100: a 3R-hydroxy cis Δ7-tetradecenoyl-[acp] + NADP+ ← a 3-oxo-cis7-tetradecenoyl-[acp] + NADPH + H+ ,
1.1.1.100: a 3R-hydroxyglutaryl-[acp] methyl ester + NADP+ ← a 3-oxo-glutaryl-[acp] methyl ester + NADPH + H+ ,
1.2.4.1: pyruvate + a [pyruvate dehydrogenase E2 protein] N6-lipoyl-L-lysine + H+ → a [pyruvate dehydrogenase E2 protein] N6-S-acetyldihydrolipoyl-L-lysine + CO2 ,
1.2.4.2: 2-oxoglutarate + SucB-lipoate = SucB-S-succinyldihydrolipoate + CO2 ,
1.2.4.2: 2-oxoglutarate + a [2-oxoglutarate dehydrogenase E2 protein] N6-lipoyl-L-lysine + H+ → a [2-oxoglutarate dehydrogenase E2 protein] N6-S-succinyldihydrolipoyl-L-lysine + CO2 ,
1.2.7.1: pyruvate + 2 an oxidized ferredoxin + coenzyme A ↔ acetyl-CoA + CO2 + 2 a reduced ferredoxin + H+ ,
1.2.99.-: pyruvate + an oxidized flavodoxin + coenzyme A + H+ ↔ acetyl-CoA + CO2 + a reduced flavodoxin ,
1.3.1.9: a dodecanoyl-[acp] + NAD+ ← a trans dodec-2-enoyl-[acp] + NADH + H+ ,
1.3.1.9: a pimeloyl-[acp] methyl ester + NAD+ ← an enoylpimeloyl-[acp] methyl ester + NADH + H+ ,
1.3.1.9: a cis7-tetradecenoyl-[acp] + NAD+ ← a trans3-cis7-tetradecenoyl-[acp] + NADH + H+ ,
1.3.1.9: a butyryl-[acp] + NAD+ ← a crotonyl-[acp] + NADH + H+ ,
1.3.1.9: a glutaryl-[acp] methyl ester + NAD+ ← an enoylglutaryl-[acp] methyl ester + NADH + H+ ,
1.3.1.9: a decanoyl-[acp] + NAD+ ← a trans2-decenoyl-[acp] + NADH + H+ ,
1.3.1.9: a palmitoyl-[acp] + NAD+ ← a trans hexadecenoyl-[acp] + NADH + H+ ,
1.3.1.9: a cis5-dodecenoyl-[acp] + NAD+ ← a trans3-cis5-dodecenoyl-[acp] + NADH + H+ ,
1.3.1.9: a 2,3,4-saturated fatty acyl-[acp] + NAD+ ← a trans-2-enoyl-[acyl-carrier protein] + NADH + H+ ,
1.3.1.9: an acyl-[acyl-carrier protein] + NAD+ = a trans-2-enoyl-[acyl-carrier protein] + NADH + H+ ,
1.3.1.9: a palmitoleoyl-[acp] + NAD+ ← a trans3-cis9-hexadecenoyl-[acp] + NADH + H+ ,
1.3.1.9: a hexanoyl-[acyl-carrier-protein] + NAD+ ← a trans hex-2-enoyl-[acp] + NADH + H+ ,
1.3.1.39/1.3.1.104/2.3.1.85/2.3.1.86: a 2,3,4-saturated fatty acyl-[acp] + NADP+ ← a trans-2-enoyl-[acyl-carrier protein] + NADPH + H+ ,
1.4.4.2: glycine + a [glycine-cleavage complex H protein] N6-lipoyl-L-lysine + H+ ↔ a [glycine-cleavage complex H protein] N6-aminomethyldihydrolipoyl-L-lysine + CO2 ,
1.6.-.-: hybrid-cluster proteinox + NADH = hybrid-cluster proteinred + NAD+ ,
1.7.2.2: ammonia + 6 an oxidized cytochrome c552 + 2 H2O ← nitrite + 6 a reduced cytochrome c552 + 7 H+ ,
1.7.2.3: trimethylamine + 2 an oxidized c-type cytochrome + H2O = trimethylamine N-oxide + 2 a reduced c-type cytochrome + 3 H+ ,
1.8.1.4: a [lipoyl-carrier protein] N6-dihydrolipoyl-L-lysine + NAD+ = a [lipoyl-carrier protein] N6-lipoyl-L-lysine + NADH + H+ ,
1.8.1.4: a [2-oxoglutarate dehydrogenase E2 protein] N6-dihydrolipoyl-L-lysine + NAD+ → a [2-oxoglutarate dehydrogenase E2 protein] N6-lipoyl-L-lysine + NADH + H+ ,
1.8.1.4: a [pyruvate dehydrogenase E2 protein] N6-dihydrolipoyl-L-lysine + NAD+ → a [pyruvate dehydrogenase E2 protein] N6-lipoyl-L-lysine + NADH + H+ ,
1.8.1.4: a [glycine-cleavage complex H protein] N6-dihydrolipoyl-L-lysine + NAD+ ↔ a [glycine-cleavage complex H protein] N6-lipoyl-L-lysine + NADH + H+ ,
1.8.1.9: a reduced thioredoxin + NADP+ ← an oxidized thioredoxin + NADPH + H+ ,
1.8.4.8: adenosine 3',5'-bisphosphate + sulfite + an oxidized thioredoxin + 2 H+ ← 3'-phosphoadenylyl-sulfate + a reduced thioredoxin ,
1.8.4.12: a [protein]-L-methionine + an oxidized thioredoxin + H2O = a protein-L-methionine-(R)-S-oxide + a reduced thioredoxin ,
1.8.4.13: L-methionine + an oxidized thioredoxin + H2O ← L-methionine-(S)-S-oxide + a reduced thioredoxin ,
1.8.4.14: L-methionine + an oxidized thioredoxin + H2O ← L-methionine-(R)-S-oxide + a reduced thioredoxin ,
1.8.4.-: 2 glutathione + an oxidized glutaredoxin → glutathione disulfide + a reduced glutaredoxin ,
1.10.3.11: 2 an ubiquinol + oxygen → 2 an ubiquinone + 2 H2O ,
1.11.1.15: an organic hydroperoxide + a reduced thioredoxin → an alcohol + an oxidized thioredoxin + H2O ,
1.11.1.16: a reduced thioredoxin + hydrogen peroxide → an oxidized thioredoxin + 2 H2O ,
1.17.4.1: dUDP + an oxidized NrdH glutaredoxin-like protein + H2O ← UDP + a reduced NrdH glutaredoxin-like protein ,
1.17.4.1: dGDP + an oxidized NrdH glutaredoxin-like protein + H2O ← GDP + a reduced NrdH glutaredoxin-like protein ,
1.17.4.1: dUDP + an oxidized thioredoxin + H2O ← UDP + a reduced thioredoxin ,
1.17.4.1: dCDP + an oxidized thioredoxin + H2O ← CDP + a reduced thioredoxin ,
1.17.4.1: dADP + an oxidized thioredoxin + H2O ↔ ADP + a reduced thioredoxin ,
1.17.4.1: dADP + an oxidized NrdH glutaredoxin-like protein + H2O ← ADP + a reduced NrdH glutaredoxin-like protein ,
1.17.4.1: dCDP + an oxidized NrdH glutaredoxin-like protein + H2O ← CDP + a reduced NrdH glutaredoxin-like protein ,
1.17.4.1: dGDP + an oxidized thioredoxin + H2O ← GDP + a reduced thioredoxin ,
1.17.4.1: an oxidized thioredoxin + a 2'-deoxyribonucleoside 5'-diphosphate + H2O ← a reduced thioredoxin + a ribonucleoside diphosphate ,
1.17.4.2: dATP + an oxidized flavodoxin + H2O ← ATP + a reduced flavodoxin ,
1.17.4.2: dUTP + an oxidized flavodoxin + H2O ← UTP + a reduced flavodoxin ,
1.17.4.2: dCTP + an oxidized flavodoxin + H2O ← CTP + a reduced flavodoxin ,
1.17.4.2: dGTP + an oxidized flavodoxin + H2O ← GTP + a reduced flavodoxin ,
1.18.1.2: an oxidized flavodoxin + NADPH + H+ = a reduced flavodoxin + NADP+ ,
1.18.1.3: 2 a reduced [2Fe-2S] ferredoxin + NAD+ + H+ = 2 an oxidized [2Fe-2S] ferredoxin + NADH ,
1.18.1.-: reduced flavorubredoxin + 2 nitric oxide → oxidized flavorubredoxin + nitrous oxide + H2O ,
1.18.1.-: oxidized flavorubredoxin + NADH = reduced flavorubredoxin + NAD+ ,
1.20.4.1: arsenate + a reduced glutaredoxin + H+ ↔ arsenite + an oxidized glutaredoxin + H2O ,
1.97.1.4: pyruvate formate-lyase (inactive) + a reduced flavodoxin + S-adenosyl-L-methionine → 5'-deoxyadenosine + L-methionine + pyruvate formate-lyase / 2-ketobutyrate formate-lyase + an oxidized flavodoxin ,
1.97.1.4: 2-ketobutyrate formate-lyase/pyruvate formate-lyase 4, inactive + a reduced flavodoxin + S-adenosyl-L-methionine → 5'-deoxyadenosine + 2-ketobutyrate formate-lyase / pyruvate formate-lyase 4 + an oxidized flavodoxin ,
2.1.1.63: a [protein]-L-cysteine + a DNA containing 6-O-methylguanine = a [protein]-S-methyl-L-cysteine + DNA (without 6-O-methylguanine) ,
2.1.1.80: a [protein]-α-L-glutamate + S-adenosyl-L-methionine → a [protein]-L-glutamate-O5-methyl-ester + S-adenosyl-L-homocysteine ,
2.1.1.-: S-adenosyl-L-methionine + TsrgluS-adenosyl-L-homocysteine + Tsrglu-Me ,
2.1.1.-: S-adenosyl-L-methionine + TapgluS-adenosyl-L-homocysteine + Tapglu-Me ,
2.1.1.-: S-adenosyl-L-methionine + a protein = a methylated protein ,
2.1.1.-: S-adenosyl-L-methionine + TargluS-adenosyl-L-homocysteine + Targlu-Me ,
2.1.1.-: S-adenosyl-L-methionine + TrggluS-adenosyl-L-homocysteine + Trgglu-Me ,
2.1.2.10: a [glycine-cleavage complex H protein] N6-aminomethyldihydrolipoyl-L-lysine + a tetrahydrofolate ↔ a [glycine-cleavage complex H protein] N6-dihydrolipoyl-L-lysine + a 5,10-methylene-tetrahydrofolate + ammonium ,
2.1.3.-: carbamoyl-phosphate + ATP + HypE → HypE-S-carboxamide + AMP + diphosphate + phosphate ,
2.3.1.12: acetyl-CoA + a [pyruvate dehydrogenase E2 protein] N6-dihydrolipoyl-L-lysine ← a [pyruvate dehydrogenase E2 protein] N6-S-acetyldihydrolipoyl-L-lysine + coenzyme A ,
2.3.1.15: sn-glycerol 3-phosphate + an acyl-[acyl-carrier protein] → a 1-acyl-sn-glycerol 3-phosphate + a holo-[acyl-carrier protein] ,
2.3.1.40: an acyl-[acyl-carrier protein] + a 1-lyso-2-acyl-sn-glycero-3-phosphoethanolamine ↔ a holo-[acyl-carrier protein] + an L-1-phosphatidyl-ethanolamine ,
2.3.1.41: a glutaryl-[acp] methyl ester + a malonyl-[acp] + H+ → a 3-oxo-pimeloyl-[acp] methyl ester + CO2 + a holo-[acyl-carrier protein] ,
2.3.1.41: a cis5-dodecenoyl-[acp] + a malonyl-[acp] + H+ → a 3-oxo-cis7-tetradecenoyl-[acp] + a holo-[acyl-carrier protein] + CO2 ,
2.3.1.41: a myristoyl-[acp] + a malonyl-[acp] + H+ → a 3-oxo-palmitoyl-[acp] + CO2 + a holo-[acyl-carrier protein] ,
2.3.1.41: a butyryl-[acp] + a malonyl-[acp] + H+ → a 3-oxo-hexanoyl-[acp] + CO2 + a holo-[acyl-carrier protein] ,
2.3.1.41: a hexanoyl-[acyl-carrier-protein] + a malonyl-[acp] + H+ → a 3-oxo-octanoyl-[acp] + CO2 + a holo-[acyl-carrier protein] ,
2.3.1.41: a malonyl-[acp] methyl ester + a malonyl-[acp] + H+ → a 3-oxo-glutaryl-[acp] methyl ester + CO2 + a holo-[acyl-carrier protein] ,
2.3.1.41: an octanoyl-[acp] + a malonyl-[acp] + H+ → a 3-oxo-decanoyl-[acp] + CO2 + a holo-[acyl-carrier protein] ,
2.3.1.41: a cis7-tetradecenoyl-[acp] + a malonyl-[acp] + H+ → a 3-oxo-cis9-hexadecenoyl-[acp] + a holo-[acyl-carrier protein] + CO2 ,
2.3.1.41: an acyl-[acyl-carrier protein] + a malonyl-[acp] + H+ = a 3-oxoacyl-[acp] + CO2 + a holo-[acyl-carrier protein] ,
2.3.1.41: a decanoyl-[acp] + a malonyl-[acp] + H+ → a 3-oxo-dodecanoyl-[acp] + CO2 + a holo-[acyl-carrier protein] ,
2.3.1.49: [a holo citrate lyase acyl-carrier protein] + S-acetyl phosphopantetheine → an acetyl-[holo citrate lyase acyl-carrier protein] + 4'-phosphopantetheine ,
2.3.1.51: 1-palmitoylglycerol 3-phosphate + a palmitoyl-[acp] → dipalmitoyl phosphatidate + a holo-[acyl-carrier protein] ,
2.3.1.51: a 2,3,4-saturated 2-lysophosphatidate + a 2,3,4-saturated fatty acyl-[acp] = a 2,3,4-saturated L-phosphatidate + a holo-[acyl-carrier protein] ,
2.3.1.51: a 1-acyl-sn-glycerol 3-phosphate + an acyl-[acyl-carrier protein] → a 1,2-diacyl-sn-glycerol 3-phosphate + a holo-[acyl-carrier protein] ,
2.3.1.61: succinyl-CoA + a [2-oxoglutarate dehydrogenase E2 protein] N6-dihydrolipoyl-L-lysine → a [2-oxoglutarate dehydrogenase E2 protein] N6-S-succinyldihydrolipoyl-L-lysine + coenzyme A ,
2.3.1.86: a dodecanoyl-[acp] + a malonyl-[acp] + H+ → a 3-oxo-myristoyl-[acp] + CO2 + a holo-[acyl-carrier protein] ,
2.3.1.86/4.2.1.59: a (3R)-3-hydroxyacyl-[acyl-carrier protein] → a trans-2-enoyl-[acyl-carrier protein] + H2O ,
2.3.1.86: a malonyl-[acp] + a 2,3,4-saturated fatty acyl-[acp] + H+ → a holo-[acyl-carrier protein] + a 3-oxoacyl-[acp] + CO2 ,
2.3.1.86/4.2.1.59: a (R)-3-hydroxybutanoyl-[acp] → a crotonyl-[acp] + H2O ,
2.3.1.86: an (R)-3-hydroxydecanoyl-[acp] + NADP+ ← a 3-oxo-decanoyl-[acp] + NADPH + H+ ,
2.3.1.86/4.2.1.59: a (R)-3-hydroxydodecanoyl-[acp] → a trans dodec-2-enoyl-[acp] + H2O ,
2.3.1.86/4.2.1.59: an (3R)-3-hydroxymyristoyl-[acp] → a trans tetradec-2-enoyl-[acp] + H2O ,
2.3.1.86: a malonyl-[acp] + an acetyl-[acp] + H+ → a holo-[acyl-carrier protein] + an acetoacetyl-[acp] + CO2 ,
2.3.1.86: an acetoacetyl-[acp] + NADPH + H+ → a (R)-3-hydroxybutanoyl-[acp] + NADP+ ,
2.3.1.86/4.2.1.59: an (R)-3-hydroxyhexanoyl-[acp] → a trans hex-2-enoyl-[acp] + H2O ,
2.3.1.86/4.2.1.59: an (R)-3-hydroxydecanoyl-[acp] → a trans2-decenoyl-[acp] + H2O ,
2.3.1.86/4.2.1.59: an (R)-3-hydroxypalmitoyl-[acp] → a trans hexadecenoyl-[acp] + H2O ,
2.3.1.86: a (R)-3-hydroxydodecanoyl-[acp] + NADP+ ← a 3-oxo-dodecanoyl-[acp] + NADPH + H+ ,
1.3.1.9: an octanoyl-[acp] + NAD+ ← a trans oct-2-enoyl-[acp] + NADH + H+ ,
2.3.1.86: a holo-[acyl-carrier protein] + malonyl-CoA ↔ a malonyl-[acp] + coenzyme A ,
2.3.1.86: an (3R)-3-hydroxymyristoyl-[acp] + NADP+ ← a 3-oxo-myristoyl-[acp] + NADPH + H+ ,
1.3.1.9: a myristoyl-[acp] + NAD+ ← a trans tetradec-2-enoyl-[acp] + NADH + H+ ,
2.3.1.86: a (3R)-3-hydroxyacyl-[acyl-carrier protein] + NADP+ ← a 3-oxoacyl-[acp] + NADPH + H+ ,
2.3.1.86: an (R)-3-hydroxypalmitoyl-[acp] + NADP+ ← a 3-oxo-palmitoyl-[acp] + NADPH + H+ ,
1.8.4.11: a [protein]-L-methionine + an oxidized thioredoxin + H2O ← a protein-L-methionine-(S)-S-oxide + a reduced thioredoxin ,
2.3.1.86: an (R)-3-hydroxyhexanoyl-[acp] + NADP+ ← a 3-oxo-hexanoyl-[acp] + NADPH + H+ ,
2.3.1.86: a (R)-3-hydroxyoctanoyl-[acp] + NADP+ ← a 3-oxo-octanoyl-[acp] + NADPH + H+ ,
1.3.1.9: a cis-vaccen-2-enoyl-[acp] + NADH + H+ → a cis-vaccenoyl-[acp] + NAD+ ,
2.3.1.86/4.2.1.59: a (R)-3-hydroxyoctanoyl-[acp] → a trans oct-2-enoyl-[acp] + H2O ,
2.3.1.86: a holo-[acyl-carrier protein] + acetyl-CoA ↔ an acetyl-[acp] + coenzyme A ,
2.3.1.128: a ribosomal protein-L-alanine + acetyl-CoA → a ribosomal protein-N-acetyl-L-alanine + coenzyme A ,
2.3.1.129: an (3R)-3-hydroxymyristoyl-[acp] + UDP-N-acetyl-α-D-glucosamine → UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine + a holo-[acyl-carrier protein] ,
2.3.1.179: a palmitoleoyl-[acp] + a malonyl-[acp] + H+ → a 3-oxo-cis-vaccenoyl-[acp] + CO2 + a holo-[acyl-carrier protein] ,
2.3.1.180: acetyl-CoA + a malonyl-[acp] + H+ → an acetoacetyl-[acp] + CO2 + coenzyme A ,
2.3.1.181: an octanoyl-[acp] + a [lipoyl-carrier protein]-L-lysine → a [lipoyl-carrier protein] N6-octanoyl-L-lysine + a holo-[acyl-carrier protein] + H+ ,
2.3.1.191: an (3R)-3-hydroxymyristoyl-[acp] + UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine → UDP-2,3-bis[O-(3R)-3-hydroxymyristoyl]-α-D-glucosamine + a holo-[acyl-carrier protein] + H+ ,
2.3.1.-: a malonyl-[acp] + H+ → an acetyl-[acp] + CO2 ,
2.3.1.-: a myristoyl-[acp] + (KDO)2-(lauroyl)-lipid IVA → (KDO)2-lipid A + a holo-[acyl-carrier protein] ,
2.3.1.-: a myristoyl-[acp] + KDO2-(palmitoleoyl)-lipid IVA → (KDO)2-lipid A, cold adapted + a holo-[acyl-carrier protein] ,
2.3.1.-: 50S ribosomal subunit protein L12 + acetyl-CoA → 50S ribosomal subunit protein L7 + coenzyme A ,
2.3.1.-: a palmitoleoyl-[acp] + α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IVA → KDO2-(palmitoleoyl)-lipid IVA + a holo-[acyl-carrier protein] ,
2.3.1.-: a dodecanoyl-[acp] + α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IVA → (KDO)2-(lauroyl)-lipid IVA + a holo-[acyl-carrier protein] ,
2.3.2.2: a 5-L-glutamyl-[peptide][periplasmic space] + an amino acid[periplasmic space] = a 5-L-glutamyl-amino acid[periplasmic space] + a peptide[periplasmic space] ,
2.5.1.-: EntB isochorismatase / aryl-carrier protein + 2,3-dihydroxybenzoate + ATP = aryl-EntB + AMP + diphosphate ,
2.7.1.69: a [PTS enzyme I]-Nπ-phospho-L-histidine + a sugar[periplasmic space] → a [PTS enzyme I]-L-histidine + a sugar phosphate[cytosol] ,
2.7.3.9: phosphoenolpyruvate + PtsI = pyruvate + PtsI-Phis189 ,
2.7.3.9: phosphoenolpyruvate + a [PTS enzyme I]-L-histidine → pyruvate + a [PTS enzyme I]-Nπ-phospho-L-histidine ,
2.7.3.9: phosphoenolpyruvate + PtsP = pyruvate + PtsP-phosphorylated ,
2.7.7.42: [a glutamine synthase] + ATP → adenylyl-[glutamine synthase] + diphosphate ,
2.7.7.59: GlnK + UTP → uridylyl-[GlnK] + diphosphate ,
2.7.7.59: a PII protein + UTP → a uridylylated PII protein + diphosphate ,
2.7.7.61: 2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA + [an apo citrate-lyase acyl-carrier protein] → [a holo citrate lyase acyl-carrier protein] + diphosphate ,
2.7.7.63: lipoyl-adenylate + [glycine cleavage system lipoyl-carrier protein]-L-lysine = a [glycine-cleavage complex H protein] N6-lipoyl-L-lysine + AMP + 2 H+ ,
2.7.7.63: lipoyl-adenylate + a [lipoyl-carrier protein]-L-lysine → a [lipoyl-carrier protein] N6-lipoyl-L-lysine + AMP + 2 H+ ,
2.7.7.63: [glycine cleavage system lipoyl-carrier protein]-L-lysine + ATP + (R)-lipoate → AMP + a [glycine-cleavage complex H protein] N6-lipoyl-L-lysine + diphosphate + H+ ,
2.7.7.73: a ThiS sulfur-carrier protein + ATP + H+ → a carboxy-adenylated-[ThiS sulfur-carrier protein] + diphosphate ,
2.7.7.80: a small subunit of molybdopterin synthase + ATP → a carboxy-adenylated small subunit of molybdopterin synthase + diphosphate ,
2.7.8.7: an apo-[acp] + coenzyme A → adenosine 3',5'-bisphosphate + a holo-[acyl-carrier protein] ,
2.7.11.1: a [protein]-(L-serine/L-threonine) + ATP → a [protein] (L-serine/L-threonine) phosphate + ADP + H+ ,
2.7.11.5: an isocitrate dehydrogenase + ATP ↔ ADP + a phosphorylated isocitrate dehydrogenase ,
2.7.11.-: serine/threonine kinase HipA + ATP → phosphorylated serine/threonine kinase HipA + ADP ,
2.8.1.7: a ThiI sulfur-carrier protein + L-cysteine = an S-sulfanyl-[ThiI sulfur-carrier protein] + L-alanine ,
2.8.1.8: a [lipoyl-carrier protein] N6-octanoyl-L-lysine + 2 S-adenosyl-L-methionine + 2 a sulfurated [sulfur carrier] → a [lipoyl-carrier protein] N6-lipoyl-L-lysine + 2 5'-deoxyadenosine + 2 L-methionine + 2 an unsulfurated [sulfur carrier] ,
2.8.1.10: 1-deoxy-D-xylulose 5-phosphate + 2-iminoacetate + a thiocarboxy-adenylated-[ThiS-Protein] → 2-[(2R,5Z)-(2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate + a ThiS sulfur-carrier protein + 2 H2O ,
2.8.1.11: a carboxy-adenylated small subunit of molybdopterin synthase + an [L-cysteine desulfurase] L-cysteine persulfide → a thiocarboxylated small subunit of molybdopterin synthase + an [L-cysteine desulfurase]-L-cysteine + AMP ,
2.8.1.-: a reduced thioredoxin + thiosulfate = an oxidized thioredoxin + sulfite + hydrogen sulfide + H+ ,
2.8.3.10: an acetyl-[holo citrate lyase acyl-carrier protein] + citrate → a citryl-[holo citrate lyase acyl-carrier protein] + acetate ,
2.8.4.4: a [ribosomal protein S12] L-aspartate89 + 2 S-adenosyl-L-methionine + a sulfurated [sulfur carrier] → a [ribosomal protein S12] 3-methylthio-L-aspartate89 + S-adenosyl-L-homocysteine + an unsulfurated [sulfur carrier] + L-methionine + 5'-deoxyadenosine + H+ ,
3.1.1.61: a [protein]-L-glutamate-O5-methyl-ester + H2O → a [protein]-α-L-glutamate + methanol + H+ ,
3.1.1.85: a pimeloyl-[acp] methyl ester + H2O → a pimeloyl-[acp] + methanol + H+ ,
3.1.1.-: Targlu-Me + H2O → methanol + Targlu ,
3.1.1.-: Trgglu-Me + H2O → methanol + Trgglu ,
3.1.1.-: Tsrglu-Me + H2O → methanol + Tsrglu ,
3.1.1.-: Tapglu-Me + H2O → methanol + Tapglu ,
3.1.2.14: a palmitoleoyl-[acp][periplasmic space] + H2O[periplasmic space] → palmitoleate[periplasmic space] + a holo-[acyl-carrier protein][periplasmic space] + H+[periplasmic space] ,
3.1.2.14: a palmitoyl-[acp] + H2O → palmitate + a holo-[acyl-carrier protein] + H+ ,
3.1.2.14: a cis-vaccenoyl-[acp][periplasmic space] + H2O[periplasmic space]cis-vaccenate[periplasmic space] + a holo-[acyl-carrier protein][periplasmic space] + H+[periplasmic space] ,
3.1.2.21: a dodecanoyl-[acp] + H2O → a holo-[acyl-carrier protein] + laurate + H+ ,
3.1.3.16: a [protein] (L-serine/L-threonine) phosphate + H2O → a [protein]-(L-serine/L-threonine) + phosphate ,
3.1.3.48: a [protein]-L-tyrosine phosphate + H2O → a [protein]-L-tyrosine + phosphate ,
3.1.3.-: ArcB sensory histidine kinase - his717 phosphorylated + H2O → ArcB sensory histidine kinase + phosphate ,
3.1.3.-: a phosphorylated isocitrate dehydrogenase + H2O → an isocitrate dehydrogenase + phosphate ,
3.1.4.14: a holo-[acyl-carrier protein] + H2O → an apo-[acp] + 4'-phosphopantetheine ,
3.4.11.1: amino acids(n) + H2O → a standard α amino acid + amino acids(n-1) ,
3.4.11.23: a protein + H2O → a standard α amino acid + a peptide ,
3.5.1.28: a peptidoglycan + H2O ↔ N-acetylmuramate + a peptide ,
3.5.1.44: a [protein]-L-glutamine + H2O → a [protein]-α-L-glutamate + ammonium ,
3.5.1.-: Trggln + H2O → ammonia + Trgglu ,
3.5.1.-: Tsrgln + H2O → ammonia + Tsrglu ,
3.5.1.-: Tapgln + H2O → ammonia + Tapglu ,
3.5.1.-: Targln + H2O → ammonia + Targlu ,
4.1.3.34: a citryl-[holo citrate lyase acyl-carrier protein] → oxaloacetate + an acetyl-[holo citrate lyase acyl-carrier protein] ,
4.2.1.59: a 3R-hydroxy cis Δ9-hexadecenoyl-[acp] → a trans3-cis9-hexadecenoyl-[acp] + H2O ,
4.2.1.59: a (R)-3-hydroxy-cis-vaccenoyl-[acp] → a cis-vaccen-2-enoyl-[acp] + H2O ,
4.2.1.59: a 3R-hydroxypimeloyl-[acp] methyl ester → an enoylpimeloyl-[acp] methyl ester + H2O ,
4.2.1.59: a 3R-hydroxy cis Δ7-tetradecenoyl-[acp] → a trans3-cis7-tetradecenoyl-[acp] + H2O ,
4.2.1.59: a 3R-hydroxyglutaryl-[acp] methyl ester → an enoylglutaryl-[acp] methyl ester + H2O ,
4.2.1.59: a 3R-hydroxy cis Δ5-dodecenoyl-[acp] → a trans3-cis5-dodecenoyl-[acp] + H2O ,
6.2.1.20: octanoate + a holo-[acyl-carrier protein] + ATP → an octanoyl-[acp] + AMP + diphosphate ,
6.2.1.20: ATP + a holo-[acyl-carrier protein] + a fatty acid → AMP + a 2,3,4-saturated fatty acyl-[acp] + diphosphate ,
6.2.1.22: [a holo citrate lyase acyl-carrier protein] + acetate + ATP → an acetyl-[holo citrate lyase acyl-carrier protein] + AMP + diphosphate ,
6.3.4.14: a biotinylated [BCCP dimer] + hydrogen carbonate + ATP → a carboxylated-biotinylated [BCCP dimer] + ADP + phosphate + H+ ,
6.3.4.15: a [biotin-carboxyl-carrier protein monomer] + biotin + ATP → a biotinylated [BCCP monomer] + AMP + diphosphate ,
6.4.1.2: ATP + acetyl-CoA + a carboxylated-biotinylated [BCCP dimer] + H2O → malonyl-CoA + a biotinylated [BCCP dimer] + ADP + phosphate + H+ ,
ATP + NtrB → ADP + NtrB-Phis ,
CpxR + CpxA sensory histidine kinase - phosphorylated[inner membrane] → CpxR-Pasp DNA-binding transcriptional dual regulator + CpxA[inner membrane] ,
D-allose + AlsR = AlsR-allose ,
ATP + SucB + (R)-lipoate = AMP + SucB-lipoate + diphosphate ,
a protein-Nπ-phospho-L-histidine + 2-phospho-D-glycerate = a [protein]-L-histidine + 2,3-diphospho-D-glycerate ,
ATP + NarQ[inner membrane] → ADP + NarQ sensory histidine kinase - phosphorylated[inner membrane] ,
ZraS[inner membrane] + ATP → ZraS-Phis254[inner membrane] + ADP ,
EvgA + EvgS-Phis1137[inner membrane] → EvgS[inner membrane] + EvgA-Pasp ,
UhpB[inner membrane] + ATP → UhpB-Phis[inner membrane] + ADP ,
a reduced thioredoxin + L-cystine → an oxidized thioredoxin + 2 L-cysteine ,
NarX sensory histidine kinase - phosphorylated[inner membrane] + NarL → NarX[inner membrane] + NarL-Pasp59 ,
apo-serine activating enzyme + coenzyme A → adenosine 3',5'-bisphosphate + aryl carrier protein / L-seryl-AMP synthase ,
OmpR + BarA sensory histidine kinase - his 861phosphorylated = OmpR-P + BarA ,
EvgS-Pasp → EvgS-Phis1137 ,
a non-methylated ribosomal protein L11 + S-adenosyl-L-methionine → a methylated ribosomal protein L11 + S-adenosyl-L-homocysteine ,
trimethylamine N-oxide + periplasmic sensory protein associated with the TorRS two-component regulatory system = TorT-TMAO ,
BaeR + BaeS sensory histidine kinase - phosphorylated[inner membrane] → BaeR-Pasp61 + BaeS[inner membrane] ,
BarA sensory histidine kinase - asp718 phosphorylated[inner membrane] → Modified BarA sensory histidine kinase[inner membrane] ,
an S-sulfanyl-[ThiI sulfur-carrier protein] + a carboxy-adenylated-[ThiS sulfur-carrier protein] → a thiocarboxy-adenylated-[ThiS-Protein] + a ThiI sulfur-carrier protein + AMP ,
a reduced d-type cytochrome + 2 H+ + oxygen → a d-type cytochrome + H2O ,
ThiS-COAMP + L-cysteine = ThiS-COSH + L-alanine + AMP ,
aryl-EntB + H2O → EntB isochorismatase / aryl-carrier protein + 2,3-dihydroxybenzoate ,
ArcB sensory histidine kinase - his292 phosphorylated + ArcA → ArcA-Pasp54 + ArcB sensory histidine kinase ,
NtrB-Phis + NtrC → NtrB sensory histidine kinase + NtrC-Pasp ,
a prolipoprotein + an L-1-phosphatidyl-glycerol = a diacylglycerol prolipoprotein + sn-glycerol 1-phosphate ,
RstB[inner membrane] + ATP → RstB sensory histidine kinase - phosphorylated[inner membrane] + ADP ,
PhoB + PhoR sensory histidine kinase - phosphorylated[inner membrane] → PhoR[inner membrane] + PhoB-Pasp53 ,
NtrB-Phis + NtrC → NtrB + NtrC-Pasp ,
CreC sensory histidine kinase - phosphorylated[inner membrane] + CreB → CreB-Pasp54 + CreC[inner membrane] ,
CheB-Pasp = CheB + phosphate ,
regulator of RpoS + ArcB sensory histidine kinase - his717 phosphorylated → RssB-P + ArcB sensory histidine kinase ,
TorS sensory histidine kinase - his850 phosphorylated[inner membrane] + TorR → TorS sensory histidine kinase[inner membrane] + TorR-Pasp ,
a [protein]-L-histidine + 2,3-diphospho-D-glycerate = a protein-Nπ-phospho-L-histidine + 3-phospho-D-glycerate ,
ATP + NarX[inner membrane] → ADP + NarX sensory histidine kinase - phosphorylated[inner membrane] ,
a reduced flavoprotein (FADH2) + an oxidized iron-sulfur protein → an oxidized flavoprotein (FAD) + a reduced iron-sulfur protein + 2 H+ ,
β-D-glucose 6-phosphate + UhpC = UhpC-glucose-6-P ,
uridylyl-[GlnK] → UMP + GlnK ,
RcsB-P + phosphate = RcsB-P-phosphate ,
EnvZ-Phis[inner membrane] + OmpR → EnvZ sensory histidine kinase[inner membrane] + OmpR-P ,
protein involved in threonylcarbamoyladenosine biosynthesis → TsaD degradation products ,
UvrY + Modified BarA sensory histidine kinase[inner membrane] → UvrY-Pasp54 + BarA[inner membrane] ,
[glycine cleavage system lipoyl-carrier protein]-L-lysine + a lipoyl-[acp] = a [glycine-cleavage complex H protein] N6-lipoyl-L-lysine + a holo-[acyl-carrier protein] + H+ ,
a reduced thioredoxin + D-cystine → an oxidized thioredoxin + 2 D-cysteine ,
ATP + RcsC[inner membrane] → ADP + RcsC-Phis[inner membrane] ,
NarQ sensory histidine kinase - phosphorylated[inner membrane] + NarP → NarQ[inner membrane] + NarP-Pasp59 ,
BasS sensory histidine kinase - phosphorylated[inner membrane] + BasR → BasS[inner membrane] + BasR-Pasp51 ,
UhpA + UhpB-Phis → UhpA-Pasp + UhpB ,
an oxidized glutaredoxin + 2 e- = a reduced glutaredoxin ,
D-fructose[periplasmic space] + PtsI-Phis189 → D-fructose 1-phosphate[cytosol] + PtsI ,
BarA sensory histidine kinase - his302 phosphorylated → BarA sensory histidine kinase - asp718 phosphorylated ,
CusS sensory histidine kinase - phosphorylated[inner membrane] + CusR → CusS[inner membrane] + CusR-Pasp51 ,
a reduced b-type cytochrome + an oxidized d-type cytochrome → an oxidized b-type cytochrome + a reduced d-type cytochrome ,
ArcB sensory histidine kinase[inner membrane] + ATP → ArcB sensory histidine kinase - his292 phosphorylated[inner membrane] + ADP ,
CheA + ATP → CheA-P + ADP ,
CheY-ac + NAD+ + H2O → CheY + 3''-O-acetyl-ADP-ribose + nicotinamide ,
a cis3-decenoyl-[acp] + a malonyl-[acp] + H+ → a 3-oxo-cis5-dodecenoyl-[acp] + a holo-[acyl-carrier protein] + CO2 ,
2 a biotinylated [BCCP monomer] → a biotinylated [BCCP dimer] ,
PhoP + PhoQ sensory histidine kinase - phosphorylated[inner membrane] → PhoP-Pasp51 + PhoQ[inner membrane] ,
a reduced flavoprotein (FMNH2) + an iron-sulfur protein → an oxidized flavoprotein (FMN) + a reduced iron-sulfur protein + 2 H+ ,
BglG + HPr-Phis15 = HPr + BglG-Phis208 ,
a [lipoyl-carrier protein]-L-lysine + octanoate + ATP → a [lipoyl-carrier protein] N6-octanoyl-L-lysine + AMP + diphosphate + H+ ,
a protein-Nπ-phospho-L-histidine + 2/3-phospho-D-glycerate = a [protein]-L-histidine + 2,3-diphospho-D-glycerate ,
a reduced flavodoxin + a ribonucleoside triphosphate = an oxidized flavodoxin + a deoxyribonucleoside triphosphate + H2O ,
NtrC-Pasp + H2O → NtrC + phosphate ,
an oxidized flavoprotein (FAD) + NAD(P)H → a reduced flavoprotein (FADH2) + NAD(P)+ ,
uridylyl-[protein PII] → PII + UMP ,
CpxA[inner membrane] + ATP → CpxA sensory histidine kinase - phosphorylated[inner membrane] + ADP ,
YpdA[inner membrane] + ATP → YpdA-Phis371[inner membrane] + ADP ,
ATP + a peptide[periplasmic space] + H2O → ADP + a peptide[cytosol] + phosphate ,
RcsC-Phis → RcsC-Pasp ,
regulator of RpoS + acetyl phosphate = RssB-P + acetate ,
ATP + AceF + (R)-lipoate = AMP + AceF-lipoate + diphosphate ,
a [protein]-L-histidine + 2,3-diphospho-D-glycerate = a protein-Nπ-phospho-L-histidine + 2/3-phospho-D-glycerate ,
an iron-sulfur protein + 2 e- = a reduced iron-sulfur protein ,
NarX sensory histidine kinase - phosphorylated[inner membrane] + NarP → NarX[inner membrane] + NarP-Pasp59 ,
ZraR + ZraS-Phis254[inner membrane] → ZraR-Pasp56 + ZraS[inner membrane] ,
EnvZ sensory histidine kinase[inner membrane] + ATP → ADP + EnvZ-Phis[inner membrane] ,
KdpD sensory histidine kinase - phosphorylated[inner membrane] + KdpE → KdpE-Pasp + KdpD[inner membrane] ,
NarQ sensory histidine kinase - phosphorylated[inner membrane] + NarL → NarQ[inner membrane] + NarL-Pasp59 ,
methyl α-D-glucoside[periplasmic space] + HPr-Phis15 → HPr + methyl α-D-glucoside 6-phosphate[cytosol] ,
peptidoglycan tetrapeptide, glycan chain 1 + murein lipoprotein → D-alanine + peptidoglycan tripeptide-Lpp crosslink ,
a ThiS-ThiI acyl-disulfide + a ThiF protein = a ThiS-ThiF acyl-disulfide + a ThiI sulfur-carrier protein ,
DcuS[inner membrane] + ATP → DcuS sensory histidine kinase - phosphorylated[inner membrane] + ADP ,
an oxidized thioredoxin + 2 e- = a reduced thioredoxin ,
AtoS-P[inner membrane] + AtoC → AtoS[inner membrane] + AtoC-P ,
CheY + CheA-P → CheY-Pasp + CheA ,
PhoQ[inner membrane] + ATP → PhoQ sensory histidine kinase - phosphorylated[inner membrane] + ADP ,
an oxidized flavoprotein (FMN) + NAD(P)H → a reduced flavoprotein (FMNH2) + NAD(P)+ ,
a reduced b-type cytochrome + an oxidized electron acceptor → an oxidized b-type cytochrome + a reduced electron acceptor ,
ThiS protein + ATP = ThiS-COAMP + diphosphate ,
YehU[inner membrane] + ATP[cytosol] → YehU-Phis382[inner membrane] + ADP[cytosol] ,
ArcA + ArcB sensory histidine kinase - his717 phosphorylated[inner membrane] → ArcA-Pasp54 + ArcB sensory histidine kinase[inner membrane] ,
QseB + QseC sensory histidine kinase - phosphorylated[inner membrane] → QseB-Pasp51 + QseC[inner membrane] ,
RstA + RstB sensory histidine kinase - phosphorylated[inner membrane] → RstA-Pasp52 + RstB[inner membrane] ,
CreC sensory histidine kinase - phosphorylated + PhoB = CreC + PhoB-Pasp53 ,
DsbAoxidised[periplasmic space] + 2 D-cysteine[periplasmic space] = D-cystine[periplasmic space] + DsbAreduced[periplasmic space] ,
DsbAoxidised[periplasmic space] + 2 L-cysteine[periplasmic space] = L-cystine[periplasmic space] + DsbAreduced[periplasmic space] ,
a diacylglycerol prolipoprotein[periplasmic space] + a phospholipid[periplasmic space] = murein lipoprotein[periplasmic space] + a lysophospholipid[periplasmic space] ,
ATP + NtrB sensory histidine kinase → ADP + NtrB-Phis ,
protein chain elongation factor EF-P + D-β-lysine + ATP = protein chain elongation factor EF-P, β-lysyl-Lys34 + AMP + diphosphate ,
ATP + TorS sensory histidine kinase[inner membrane] → ADP + TorS sensory histidine kinase - his443 phosphorylated[inner membrane] ,
AtoS[inner membrane] + ATP → AtoS-P[inner membrane] + ADP ,
EvgS[inner membrane] + ATP → EvgS-Phis721[inner membrane] + ADP ,
CusS[inner membrane] + ATP → CusS sensory histidine kinase - phosphorylated[inner membrane] + ADP ,
QseC[inner membrane] + ATP → QseC sensory histidine kinase - phosphorylated[inner membrane] + ADP ,
GlrK[inner membrane] + ATP → GlrK sensory histidine kinase - phosphorylated[inner membrane] + ADP ,
ATP + DpiB[inner membrane] → ADP + DpiB sensory histidine kinase - phosphorylated[inner membrane] ,
cyclic pyranopterin phosphate + MoaD-S = molybdopterin synthase small subunit + molybdopterin ,
L-ascorbate + 2 an oxidized c-type cytochrome → L-dehydro-ascorbate + 2 a reduced c-type cytochrome + H+ ,
a reduced hydrogenase 3 + 2 H+ ↔ an oxidized hydrogenase 3 + H2 ,
formate + an oxidized hydrogenase 3 = CO2 + a reduced hydrogenase 3 + H+ ,
PhoR[inner membrane] + ATP → ADP + PhoR sensory histidine kinase - phosphorylated[inner membrane] ,
ATP + KdpD[inner membrane] → KdpD sensory histidine kinase - phosphorylated[inner membrane] + ADP ,
adenylyl-[glutamine synthase] + phosphate → [a glutamine synthase] + ADP ,
isochorismatase / aryl-carrier protein + coenzyme A → EntB isochorismatase / aryl-carrier protein + adenosine 3',5'-bisphosphate ,
ATP + CreC[inner membrane] → ADP + CreC sensory histidine kinase - phosphorylated[inner membrane] ,
CheY-Pasp + H2O → CheY + phosphate ,
ATP + BasS[inner membrane] → ADP + BasS sensory histidine kinase - phosphorylated[inner membrane] ,
BarA[inner membrane] + ATP → BarA sensory histidine kinase - his302 phosphorylated[inner membrane] + ADP ,
BaeS[inner membrane] + ATP → BaeS sensory histidine kinase - phosphorylated[inner membrane] + ADP


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Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 18.5 on Fri Nov 28, 2014, biocyc13.