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Metabolic Modeling Tutorial
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Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
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Escherichia coli K-12 substr. MG1655 Reactions Class: Protein-Reactions

Summary:
Reactions in which at least one substrate is a protein monomer, a complex containing a protein, or a modified protein.

Parent Classes:
Macromolecule Reactions

Child classes:
Protein-Modification Reactions (307) ,
Protein-DNA-Binding-Reactions (0) ,
Protein-Ligand-Binding-Reactions (101)

Instances:
2.3.2.6: L-leucyl-tRNAleu + a protein = tRNAleu + L-leucyl-[protein] + H+ ,
5.3.4.1: a protein with incorrect disulfide bonds ↔ a protein with correct disulfide bonds ,
YpdA-Phis371[inner membrane] + YpdB → YpdA[inner membrane] + YpdB-Pasp ,
pyruvate formate-lyase / 2-ketobutyrate formate-lyase = pyruvate formate-lyase (inactive) ,
CheA-P + CheB → CheA + CheB-Pasp ,
DsbGoxidized[periplasmic space] + DsbDreduced[periplasmic space] = DsbGreduced[periplasmic space] + DsbDoxidized[periplasmic space] ,
GlrK sensory histidine kinase - phosphorylated[inner membrane] + GlrR → GlrK[inner membrane] + GlrR-Pasp56 ,
a protein with reduced sulfide groups ↔ a protein with oxidized disulfide bonds ,
TorS sensory histidine kinase - his443 phosphorylated → TorS sensory histidine kinase - asp723 phosphorylated ,
MalT + MalK = MalT-MalK ,
ArcB sensory histidine kinase - asp576 phosphorylated → ArcB sensory histidine kinase - his717 phosphorylated ,
BglG + BglF-Pcys24 = BglG-Phis101 + BglF ,
DsbBoxidised[periplasmic space] + DsbAreduced[periplasmic space] = DsbAoxidised[periplasmic space] + DsbBreduced[periplasmic space] ,
curlin, major subunit[periplasmic space] → curlin, major subunit[extracellular space] ,
PtsI-Phis189 + HPr = HPr-Phis15 + PtsI ,
a menaquinone oxidoreductase (menaquinone-8) + a reduced iron-sulfur protein + 2 H+ → a menaquinone oxidoreductase (menaquinol-8) + an iron-sulfur protein + 2 H+ ,
RcsD[inner membrane] + RcsC-Pasp[inner membrane] → RcsD-Phis[inner membrane] + RcsC[inner membrane] ,
DsbDreduced[periplasmic space] + DsbCoxidized[periplasmic space] = DsbDoxidized[periplasmic space] + DsbCreduced[periplasmic space] ,
DcuR + DcuS sensory histidine kinase - phosphorylated[inner membrane] → DcuR-Pasp + DcuS[inner membrane] ,
a menaquinone oxidoreductase (demethylmenaquinone) + a reduced iron-sulfur protein + 2 H+ → a menaquinone oxidoreductase (demethylmenaquinol) + an iron-sulfur protein + 2 H+ ,
a ubiquinol-8 oxidoreductase + a b-type cytochrome → a ubiquinone-8 oxidoreductase + a reduced b-type cytochrome ,
TorR + prophage excisionase and response regulator inhibitor = TorR-TorI ,
ArcB sensory histidine kinase - his292 phosphorylated → ArcB sensory histidine kinase - asp576 phosphorylated ,
BglG + FruB-Phis299 = FruB + BglG-Phis208 ,
PtsP-phosphorylated + Npr = Npr phosphorylated + PtsP ,
AceF + lipoyl-ACP = AceF-lipoate + a holo-[acyl-carrier protein] ,
YehT[cytosol] + YehU-Phis382[inner membrane] → YehT-P[cytosol] + YehU[inner membrane] ,
a b-type cytochrome + a menaquinone oxidoreductase (menaquinol-8) → a reduced b-type cytochrome + a menaquinone oxidoreductase (menaquinone-8) ,
RcsB + RcsD-Phis[inner membrane] → RcsB-P + RcsD[inner membrane] ,
a reduced iron-sulfur protein + a ubiquinone-8 oxidoreductase + 2 H+ → an iron-sulfur protein + a ubiquinol-8 oxidoreductase + 2 H+ ,
EvgS-Phis721 → EvgS-Pasp ,
a b-type cytochrome + a menaquinone oxidoreductase (demethylmenaquinol) → a reduced b-type cytochrome + a menaquinone oxidoreductase (demethylmenaquinone) ,
DpiB sensory histidine kinase - phosphorylated[inner membrane] + DpiA → DpiB[inner membrane] + DpiA-Pasp57 ,
a reduced b-type cytochrome + a b-type cytochrome → a b-type cytochrome + a reduced cytochrome o ,
TorS sensory histidine kinase - asp723 phosphorylated → TorS sensory histidine kinase - his850 phosphorylated ,
SucB + lipoyl-ACP = SucB-lipoate + a holo-[acyl-carrier protein] ,
Npr phosphorylated + PtsN = PtsN-phosphorylated + Npr ,
RcsA + RcsB → RcsAB


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Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 18.5 on Thu Dec 18, 2014, biocyc13.