Escherichia coli K-12 substr. MG1655 Class: Pseudo-Genes

Pseudo genes are regions of DNA that show sequence similarity to other functional genes, but that are not in fact functional genes. A pseudogene might be nonfunctional because of sequence changes that prevent its transcription or translation, such as by disrupting its promoter or by introducing a premature stop codon.

Parent Classes:

Child Classes:
Cryptic-Genes (23),
Interrupted-Genes (60)

afuB (AfuB pseudogene; CP4-6 prophage; non-functioning membrane subunit of ferric ion ABC transporter),
agaA (predicted truncated N-acetylgalactosamine-6-phosphate deacetylase),
agaV (N-acetyl-D-galactosamine PTS permease (cryptic) - AgaV subunit),
agaW (N-acetyl-D-galactosamine PTS permease (cryptic) - AgaW subunit (pseudogene)),
eaeH (attaching and effacing protein homolog, pathogenesis factor),
icdC (conserved protein),
insD (Qin prophage; predicted transposase),
intB (KpLE2 phage-like element; predicted integrase),
intG (predicted defective phage integrase),
intQ (Qin prophage; predicted defective integrase),
lafU (flagellar system protein, promoterless fragment),
lfhA (flagellar system protein, promoterless fragment),
nmpC (outer membrane porin protein; locus of qsr prophage),
pbl (predicted peptidoglycan-binding enzyme),
phnE_2 (phosphonate/organophosphate ester transporter (pseudogene)),
pinH (predicted invertase fragment),
prfH (predicted peptide chain release factor),
rhsE (RhsE protein in rhs element),
rph (RNase PH monomer),
stfE (e14 prophage; predicted side tail fiber protein fragment),
tfaD (DLP12 prophage; predicted tail fiber assembly protein),
yafF (conserved protein),
ybcD (DLP12 prophage; predicted replication protein fragment),
ybeM_1 (predicted protein of C-N hydrolase superfamily, N-terminal fragment),
ybeM_2 (predicted protein of C-N hydrolase superfamily, C-terminal fragment),
ybfG (predicted protein),
ybfH (predicted protein),
ybfL (predicted transposase; receptor protein),
ybfO (conserved protein, rhs-like),
ychG_1 (predicted protein, N-terminal fragment),
ychG_2 (predicted protein),
ydfC (Qin prophage; predicted protein),
ydfE (Qin prophage; predicted protein),
yeeP (CP4-44 prophage; predicted GTP-binding protein),
yegZ (predicted protein fragment),
ygaY (putative transporter, major facilitator superfamily; pseudogene),
ygeN (predicted protein),
yghE (predicted secretion pathway protein, L-type protein (pseudogene)),
yhiK (predicted protein),
yifN (conserved protein),
yjhD (KpLE2 phage-like element; predicted protein),
yjhE (KpLE2 phage-like element; predicted membrane protein (pseudogene)),
yjhR (KpLE2 phage-like element; predicted frameshift suppressor),
yjiV (conserved protein),
ykfJ (conserved protein),
ykgA (predicted DNA-binding transcriptional regulator),
ymdE (predicted protein),
ynfP (predicted protein),
ypjM_1 (CP4-57 prophage; predicted protein),
ypjM_3 (CP4-57 prophage; predicted inner membrane protein),
yrhA (conserved protein),

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Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 19.5 on Mon Nov 30, 2015, BIOCYC13B.