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discounted EARLY registration ends Dec 31, 2014
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Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
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BioCyc websites down
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Escherichia coli K-12 substr. MG1655 Reactions Class: RNA-Reactions

Summary:
Reactions in which at least one substrate is an RNA, a complex containing an RNA, or a modified RNA.

Parent Classes:
Polynucleotide-Reactions

Child classes:
tRNA-Reactions (56)

Instances:
2.1.1.166: uridine2552 in 23S rRNA + S-adenosyl-L-methionine → 2-O-methyluridine2552 in 23S rRNA + S-adenosyl-L-homocysteine + H+ ,
2.1.1.170: S-adenosyl-L-methionine + guanine527 in 16S rRNA → S-adenosyl-L-homocysteine + N7-methylguanine527 in 16S rRNA ,
2.1.1.171: S-adenosyl-L-methionine + guanine966 in 16S rRNA → S-adenosyl-L-homocysteine + N2-methylguanine966 in 16S rRNA + H+ ,
2.1.1.172: S-adenosyl-L-methionine + guanine1207 in 16S rRNA → S-adenosyl-L-homocysteine + N2-methylguanine1207 in 16S rRNA + H+ ,
2.1.1.173: S-adenosyl-L-methionine + guanine2445 in 23S rRNA → S-adenosyl-L-homocysteine + N2-methylguanine2445 in 23S rRNA + H+ ,
2.1.1.174: S-adenosyl-L-methionine + guanine1835 in 23S rRNA → S-adenosyl-L-homocysteine + N2-methylguanine1835 in 23S rRNA + H+ ,
2.1.1.176: cytosine967 in 16S rRNA + S-adenosyl-L-methionine → 5-methylcytosine967 in 16S rRNA + S-adenosyl-L-homocysteine + H+ ,
2.1.1.177: S-adenosyl-L-methionine + a pseudouridine1915 in 23S rRNA → S-adenosyl-L-homocysteine + an N3-methylpseudouridine1915 in 23S rRNA + H+ ,
2.1.1.178: S-adenosyl-L-methionine + cytosine1407 in 16S rRNA → S-adenosyl-L-homocysteine + 5-methylcytosine1407 in 16S rRNA + H+ ,
2.1.1.181: adenine1618 in 23S rRNA + S-adenosyl-L-methionine → N6-methyladenine1618 in 23S rRNA + S-adenosyl-L-homocysteine + H+ ,
2.1.1.182: adenine1518/adenine1519 in 16S rRNA + 4 S-adenosyl-L-methionine → N6-dimethyladenine1518/N6-dimethyladenine1519in 16S rRNA + 4 S-adenosyl-L-homocysteine + 4 H+ ,
2.1.1.185: guanosine2251 in 23S rRNA + S-adenosyl-L-methionine → 2-O-methylguanosine2251 in 23S rRNA + S-adenosyl-L-homocysteine + H+ ,
2.1.1.186: cytidine2498 in 23S rRNA + S-adenosyl-L-methionine → 2-O-methylcytidine2498 in 23S rRNA + S-adenosyl-L-homocysteine + H+ ,
2.1.1.187: guanine745 in 23S rRNA + S-adenosyl-L-methionine → N1-methylguanine745 in 23S rRNA + S-adenosyl-L-homocysteine + H+ ,
2.1.1.189: a uracil747 in 23S rRNA + S-adenosyl-L-methionine → a 5-methyluracil747 in 23S rRNA + S-adenosyl-L-homocysteine + H+ ,
2.1.1.190: a uracil1939 in 23S rRNA + S-adenosyl-L-methionine → a 5-methyluracil1939 in 23S rRNA + S-adenosyl-L-homocysteine + H+ ,
2.1.1.191: cytosine1962 in 23S rRNA + S-adenosyl-L-methionine → 5-methylcytosine1962 in 23S rRNA + S-adenosyl-L-homocysteine + H+ ,
2.1.1.192: 2 S-adenosyl-L-methionine + adenine2503 in 23S rRNA → S-adenosyl-L-homocysteine + L-methionine + 5'-deoxyadenosine + 2-methyladenine2503 in 23S rRNA ,
2.1.1.193: S-adenosyl-L-methionine + uracil1498 in 16S rRNA → S-adenosyl-L-homocysteine + N3-methyluracil1498 in 16S rRNA + H+ ,
2.1.1.198: S-adenosyl-L-methionine + cytidine1402 in 16S rRNA → S-adenosyl-L-homocysteine + 2'-O-methylcytidine1402 in 16S rRNA + H+ ,
2.1.1.199: S-adenosyl-L-methionine + cytidine1402 in 16S rRNA → S-adenosyl-L-homocysteine + N4-methylcytidine1402 in 16S rRNA + H+ ,
2.1.1.-: 2 S-adenosyl-L-methionine + an adenine37 in tRNA → S-adenosyl-L-homocysteine + L-methionine + 5'-deoxyadenosine + a 2-methyladenine37 in tRNA ,
2.1.1.-: rRNA + S-adenosyl-L-methionine → rRNA containing N6,N6-dimethyladenine + S-adenosyl-L-homocysteine ,
2.1.1.-: an rRNA + S-adenosyl-L-methionine → rRNA containing 2-methyladenine + S-adenosyl-L-homocysteine ,
2.7.7.6: a nucleoside triphosphate + RNA(n) = RNA(n+1) + diphosphate ,
2.7.7.8: a single-stranded RNA + phosphate ↔ a single-stranded RNA + a nucleoside diphosphate ,
2.7.7.19: ATP + an mRNA = an mRNA + diphosphate ,
3.1.13.1: RNase II poly-A substrate mRNA + n H2O → RNase II substrate with no poly-A tail + n AMP ,
3.1.26.1: YhaV endonuclease degradation substrate mRNA + H2O → 2 a single-stranded RNA ,
3.1.26.1: YhaV endonuclease degradation substrate rRNA + H2O → 2 a single-stranded RNA ,
3.1.26.12: RNase E degradation substrate mRNA + n H2O → n a single-stranded RNA ,
3.1.26.12: RNase E mRNA processing substrate + n H2O → RNase E processing product mRNA + n a single-stranded RNA ,
3.1.26.12: 9S rRNA + 2 H2O → 5S rRNA + 2 a single-stranded RNA ,
3.1.26.12: RNase G degradation substrate mRNA + H2O → 2 a single-stranded RNA ,
3.1.26.-: an mRNA + H2O → a single-stranded RNA + a single-stranded RNA ,
3.1.27.6: 23S rRNA[periplasmic space] + H2O[periplasmic space] → 2 a single-stranded RNA[periplasmic space] ,
3.1.27.6: rRNA[periplasmic space] = 2 a single-stranded RNA[periplasmic space] ,
3.1.-.-: an mRNA + H2O → a single-stranded RNA + a single-stranded RNA ,
3.6.1.-: an mRNA + H2O → a 5'-phospho-[mRNA] + diphosphate ,
6.5.1.4: an RNA 3'-terminal-phosphate + ATP → an RNA terminal-2',3'-cyclic-phosphate + AMP + diphosphate ,
pre-crRNA → crRNA ,
an RNA terminal-2',3'-cyclic-phosphate + a 5'-hydroxyl terminated RNA + GTP → a ligated RNA + GMP + diphosphate


Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 18.5 on Sat Dec 20, 2014, biocyc14.