Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
twitter

Escherichia coli K-12 substr. MG1655 Reactions Class: tRNA-Reactions

Summary:
Reactions in which at least one substrate is a tRNA or a modified tRNA.

Parent Classes:
RNA-Reactions

Child classes:
tRNA-Charging-Reactions (21)

Instances:
1.1.1.-: a 5,6-dihydrouridine in tRNA + NADP+ ← a uridine in tRNA + NADPH + H+ ,
1.2.1.70: glutamate-1-semialdehyde + tRNAGlu + NADP+ ← L-glutamyl-tRNAGlu + NADPH ,
1.17.99.-: a queuosine34 in tRNA + an oxidized electron acceptor + H2O ← an epoxyqueuosine34 in tRNA + a reduced electron acceptor ,
2.1.1.33: guanine46 in tRNA + S-adenosyl-L-methionine → N7-methylguanine46 in tRNA + S-adenosyl-L-homocysteine ,
2.1.1.34: a guanosine18 in tRNA + S-adenosyl-L-methionine → a 2'-O-methylguanosine18 in tRNA + S-adenosyl-L-homocysteine + H+ ,
2.1.1.35: a uracil54 in tRNA + S-adenosyl-L-methionine → a 5-methyluracil54 in tRNA + S-adenosyl-L-homocysteine + H+ ,
2.1.1.61: a tRNA containing 5-aminomethyl-2-thiouridine + S-adenosyl-L-methionine → S-adenosyl-L-homocysteine + a 5-methylaminomethyl-2-thiouridine in tRNA + 2 H+ ,
2.1.1.200: a cytidine 32 in tRNA + S-adenosyl-L-methionine → a 2'-O-methylcytidine32 in tRNA + S-adenosyl-L-homocysteine + H+ ,
2.1.1.200: a uridine32 in tRNA + S-adenosyl-L-methionine → a 2'-O-methyluridine32 in tRNA + S-adenosyl-L-homocysteine + H+ ,
2.1.1.207: a cytidine34 in tRNA + S-adenosyl-L-methionine → a 2'-O-methylcytidine34 in tRNA + S-adenosyl-L-homocysteine + H+ ,
2.1.1.207: a 5-carboxymethylaminomethyluridine34 in tRNALeu + S-adenosyl-L-methionine → a 5-carboxymethylaminomethyl-2'-O-methyluridine34 in tRNALeu + S-adenosyl-L-homocysteine + H+ ,
2.1.1.223: S-adenosyl-L-methionine + adenine37 in tRNA1valS-adenosyl-L-homocysteine + N6-methyladenine37 in tRNA1val + H+ ,
2.1.1.228: guanine37 in tRNA + S-adenosyl-L-methionine → N1-methylguanine37 in tRNA + S-adenosyl-L-homocysteine + H+ ,
2.1.2.9: an N10-formyl-tetrahydrofolate + L-methionyl-tRNAfmet → a tetrahydrofolate + N-formyl-L-methionyl-tRNAfmet ,
2.3.1.193: a cytidine34 in tRNAmet + ATP + acetyl-CoA + H2O → [elongator tRNAmet]-N4-acetylcytidine34 + ADP + coenzyme A + phosphate + H+ ,
2.3.2.6: L-leucyl-tRNAleu + a protein = tRNAleu + L-leucyl-[protein] + H+ ,
2.4.1.-: queuosine at position 34 of a tRNAAsp + ATP + L-glutamate → glutamyl-queuosine at position 34 of a tRNAAsp + AMP + diphosphate + 2 H+ ,
2.4.2.29: a guanine34 in tRNA + preQ1 → a 7-aminomethyl-7-deazaguanosine34 in tRNA + guanine ,
2.4.99.17: a 7-aminomethyl-7-deazaguanosine34 in tRNA + S-adenosyl-L-methionine → an epoxyqueuosine34 in tRNA + adenine + L-methionine + 2 H+ ,
2.5.1.75: dimethylallyl diphosphate + an adenosine37 in tRNA = N6-dimethylallyladenosine37 in tRNA + diphosphate ,
2.7.7.56: a tRNA precursor with a short 3' extension + n phosphate → an uncharged tRNA + n a ribonucleoside diphosphate ,
2.7.7.56: RNA(n+1) + phosphate = RNA(n) + a nucleoside diphosphate ,
2.7.7.72: a tRNA precursor + 2 CTP + ATP → a tRNA containing a 3' CCA end + 3 diphosphate ,
2.8.1.4: 'activated' tRNA + L-cysteine = L-serine + tRNA containing a thionucleotide ,
2.9.1.1: selenophosphate + L-seryl-tRNAsec → L-selenocysteinyl-tRNAsec + phosphate + H+ ,
3.1.1.29: an N-modified aminoacyl-tRNA + H2O → a tRNA + an N-modified amino acid + 2 H+ ,
3.1.1.96: a D-aminoacyl-tRNA + H2O → a D-amino acid + a tRNA + 2 H+ ,
3.1.13.1: mutated tRNA + n H2O → n a nucleoside 5'-monophosphate ,
3.1.13.5: a tRNA precursor + H2O → a tRNA + a nucleoside 5'-monophosphate ,
3.1.13.5: a tRNA precursor with a short 3' extension → an uncharged tRNA + n a nucleoside 5'-monophosphate ,
3.1.26.5: a tRNA precursor with a 5' extension + H2O → an uncharged tRNA + a single-stranded RNA ,
3.5.4.-: an adenosine34 in [tRNAArg2] + H+ + H2O → an inosine34 in [tRNAArg2] + ammonium ,
5.4.99.12: a tRNA uridine38-40 → a pseudouridine38-40 in tRNA ,
6.3.4.19: a cytidine34 in tRNAIle2 + L-lysine + ATP → a lysidine34 in tRNAIle2 + AMP + diphosphate + 2 H+ ,
D-tyrosyl-tRNATyr + H2O = tRNAtyr + D-tyrosine


Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 18.5 on Mon Nov 24, 2014, biocyc14.