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Escherichia coli K-12 substr. MG1655 Polypeptide: putative sulfatase



Gene: yidJ Accession Numbers: EG11705 (EcoCyc), b3678, ECK3669

Regulation Summary Diagram: ?

Summary:
No information about this protein was found by a literature search conducted on November 2, 2005.

Map Position: [3,854,934 <- 3,856,427] (83.09 centisomes)
Length: 1494 bp / 497 aa

Molecular Weight of Polypeptide: 57.295 kD (from nucleotide sequence)

Unification Links: ASAP:ABE-0012024 , EchoBASE:EB1656 , EcoGene:EG11705 , EcoliWiki:b3678 , ModBase:P31447 , OU-Microarray:b3678 , PortEco:yidJ , Pride:P31447 , Protein Model Portal:P31447 , RefSeq:NP_418134 , RegulonDB:EG11705 , SMR:P31447 , String:511145.b3678 , Swiss-Model:P31447 , UniProt:P31447

Relationship Links: InterPro:IN-FAMILY:IPR000917 , InterPro:IN-FAMILY:IPR017849 , InterPro:IN-FAMILY:IPR017850 , InterPro:IN-FAMILY:IPR024607 , Pfam:IN-FAMILY:PF00884 , Prosite:IN-FAMILY:PS00149 , Prosite:IN-FAMILY:PS00523

In Paralogous Gene Group: 299 (3 members)

GO Terms:

Biological Process: GO:0008152 - metabolic process Inferred by computational analysis [GOA01]
Molecular Function: GO:0003824 - catalytic activity Inferred by computational analysis [GOA01]
GO:0008484 - sulfuric ester hydrolase activity Inferred by computational analysis [GOA01]
GO:0016787 - hydrolase activity Inferred by computational analysis [UniProtGOA11]
GO:0046872 - metal ion binding Inferred by computational analysis [UniProtGOA11]

MultiFun Terms: metabolism metabolism of other compounds sulfur metabolism

Essentiality data for yidJ knockouts: ?

Growth Medium Growth? T (°C) O2 pH Osm/L Growth Observations
LB enriched Yes 37 Aerobic 6.95   Yes [Gerdes03, Comment 1]
LB Lennox Yes 37 Aerobic 7   Yes [Baba06, Comment 2]
M9 medium with 1% glycerol Yes 37 Aerobic 7.2 0.35 Yes [Joyce06, Comment 3]
MOPS medium with 0.4% glucose Yes 37 Aerobic 7.2 0.22 Yes [Baba06, Comment 2]

Sequence Features

Feature Class Location Citations Comment
Metal-Binding-Site 12
[UniProt10a]
UniProt: Calcium; Non-Experimental Qualifier: by similarity;
Metal-Binding-Site 13
[UniProt10a]
UniProt: Calcium; Non-Experimental Qualifier: by similarity;
3-oxoalanine-Modification 52
[UniProt11a]
UniProt: 3-oxoalanine (Cys); Non-Experimental Qualifier: by similarity.
Metal-Binding-Site 52
[UniProt10a]
UniProt: Calcium; via 3-oxoalanine; Non-Experimental Qualifier: by similarity;
Active-Site 102
[UniProt10a]
UniProt: Non-Experimental Qualifier: potential;
Metal-Binding-Site 284
[UniProt10a]
UniProt: Calcium; Non-Experimental Qualifier: by similarity;
Metal-Binding-Site 285
[UniProt10a]
UniProt: Calcium; Non-Experimental Qualifier: by similarity;


Gene Local Context (not to scale): ?

Transcription Unit:

Notes:

History:
10/20/97 Gene b3678 from Blattner lab Genbank (v. M52) entry merged into EcoCyc gene EG11705; confirmed by SwissProt match.


References

Baba06: Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, Baba M, Datsenko KA, Tomita M, Wanner BL, Mori H (2006). "Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection." Mol Syst Biol 2;2006.0008. PMID: 16738554

Gerdes03: Gerdes SY, Scholle MD, Campbell JW, Balazsi G, Ravasz E, Daugherty MD, Somera AL, Kyrpides NC, Anderson I, Gelfand MS, Bhattacharya A, Kapatral V, D'Souza M, Baev MV, Grechkin Y, Mseeh F, Fonstein MY, Overbeek R, Barabasi AL, Oltvai ZN, Osterman AL (2003). "Experimental determination and system level analysis of essential genes in Escherichia coli MG1655." J Bacteriol 185(19);5673-84. PMID: 13129938

GOA01: GOA, DDB, FB, MGI, ZFIN (2001). "Gene Ontology annotation through association of InterPro records with GO terms."

Joyce06: Joyce AR, Reed JL, White A, Edwards R, Osterman A, Baba T, Mori H, Lesely SA, Palsson BO, Agarwalla S (2006). "Experimental and computational assessment of conditionally essential genes in Escherichia coli." J Bacteriol 188(23);8259-71. PMID: 17012394

UniProt10a: UniProt Consortium (2010). "UniProt version 2010-07 released on 2010-06-15 00:00:00." Database.

UniProt11a: UniProt Consortium (2011). "UniProt version 2011-11 released on 2011-11-22 00:00:00." Database.

UniProtGOA11: UniProt-GOA (2011). "Gene Ontology annotation based on manual assignment of UniProtKB keywords in UniProtKB/Swiss-Prot entries."


Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 18.5 on Tue Nov 25, 2014, biocyc14.