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Escherichia coli K-12 substr. MG1655 Polypeptide: putative outer membrane usher protein



Gene: htrE Accession Numbers: EG11972 (EcoCyc), b0139, ECK0138

Regulation Summary Diagram: ?

Summary:
HtrE has similarity to PapC, which is a type II pilin porin [Raina93]. yadCKLMhtrEecpDyadN is a putative chaperone-usher fimbrial operon in E.coli K-12 [Korea10]. The operon is cryptic under normal laboratory conditions but when constitutive expression is induced in a strain that lacks the type 1 fimbrial complex the yad operon promotes biofilm formation in minimal media on a variety of abiotic surfaces and produces surface fimbrial structures that can be observed microscopically [Korea10]. Expression of the yad operon is negatively regulated by H-NS [Korea10].

An htrE insertion mutant exhibits heat sensitivity [Raina93]. HtrE is subject to posttranslational processing; the mature form of the protein is 92kDa whereas the translation product is 95 kDa [Raina93].

Citations: [Korea11]

Locations: outer membrane

Map Position: [152,829 <- 155,426] (3.29 centisomes)
Length: 2598 bp / 865 aa

Molecular Weight of Polypeptide: 95.499 kD (from nucleotide sequence)

Unification Links: ASAP:ABE-0000479 , CGSC:30510 , DIP:DIP-9953N , EchoBASE:EB1915 , EcoGene:EG11972 , EcoliWiki:b0139 , Mint:MINT-1300601 , OU-Microarray:b0139 , PortEco:htrE , PR:PRO_000022940 , Pride:P33129 , Protein Model Portal:P33129 , RefSeq:NP_414681 , RegulonDB:EG11972 , SMR:P33129 , String:511145.b0139 , UniProt:P33129

Relationship Links: InterPro:IN-FAMILY:IPR000015 , InterPro:IN-FAMILY:IPR018030 , InterPro:IN-FAMILY:IPR025885 , InterPro:IN-FAMILY:IPR025949 , Pfam:IN-FAMILY:PF00577 , Pfam:IN-FAMILY:PF13953 , Pfam:IN-FAMILY:PF13954 , Prosite:IN-FAMILY:PS01151

In Paralogous Gene Group: 43 (37 members)

Genetic Regulation Schematic: ?

GO Terms:

Biological Process: GO:0006810 - transport Inferred by computational analysis [UniProt-GOA, 2011, GOA et al., 2001]
GO:0006950 - response to stress Inferred by computational analysis [UniProt-GOA, 2011]
GO:0043711 - pilus organization Inferred by computational analysis [Korea10]
Molecular Function: GO:0005215 - transporter activity Inferred by computational analysis [GOA et al., 2001]
GO:0015473 - fimbrial usher porin activity Inferred by computational analysis [Korea10]
Cellular Component: GO:0009279 - cell outer membrane Inferred by computational analysis [UniProtGOA11, UniProt-GOA, 2011, Diaz-Mejia et al., 2009]
GO:0016020 - membrane Inferred by computational analysis [UniProt-GOA, 2011, GOA et al., 2001]
GO:0016021 - integral component of membrane Inferred by computational analysis [UniProt-GOA, 2011]

MultiFun Terms: cell structure pilus

Essentiality data for htrE knockouts: ?

Growth Medium Growth? T (°C) O2 pH Osm/L Growth Observations
LB enriched Yes 37 Aerobic 6.95   Yes [Gerdes et al., 2003, Comment 1]
LB Lennox Yes 37 Aerobic 7   Yes [Baba et al., 2006, Comment 2]
M9 medium with 1% glycerol Yes 37 Aerobic 7.2 0.35 Yes [Joyce et al., 2006, Comment 3]
MOPS medium with 0.4% glucose Yes 37 Aerobic 7.2 0.22 Yes [Baba et al., 2006, Comment 2]

Credits:
Last-Curated ? 14-Apr-2010 by Mackie A , Macquarie University


Sequence Features

Feature Class Location Citations Comment
Signal-Sequence 1 -> 29
[Raina94, UniProt12a]
.
Chain 30 -> 865
[UniProt, 2009]
UniProt: Outer membrane usher protein htrE;
Sequence-Conflict 51
[Raina93, UniProt, 2010]
Alternate sequence: S → T; UniProt: (in Ref. 1; AAA23721);
Sequence-Conflict 810 -> 811
[Raina93, UniProt, 2010]
Alternate sequence: QG → HR; UniProt: (in Ref. 1; AAA23721);
Disulfide-Bond-Site 862, 838
[UniProt10]
UniProt: Non-Experimental Qualifier: potential;
Sequence-Conflict 849
[Raina93, UniProt, 2010]
Alternate sequence: E → P; UniProt: (in Ref. 1; AAA23721);


Gene Local Context (not to scale): ?

Transcription Units:

Notes:

History:
10/20/97 Gene b0139 from Blattner lab Genbank (v. M52) entry merged into EcoCyc gene EG11972; confirmed by SwissProt match.


References

Baba et al., 2006: Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, Baba M, Datsenko KA, Tomita M, Wanner BL, Mori H (2006). "Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection." Mol Syst Biol 2;2006.0008. PMID: 16738554

Diaz-Mejia et al., 2009: Diaz-Mejia JJ, Babu M, Emili A (2009). "Computational and experimental approaches to chart the Escherichia coli cell-envelope-associated proteome and interactome." FEMS Microbiol Rev 33(1);66-97. PMID: 19054114

Gerdes et al., 2003: Gerdes SY, Scholle MD, Campbell JW, Balazsi G, Ravasz E, Daugherty MD, Somera AL, Kyrpides NC, Anderson I, Gelfand MS, Bhattacharya A, Kapatral V, D'Souza M, Baev MV, Grechkin Y, Mseeh F, Fonstein MY, Overbeek R, Barabasi AL, Oltvai ZN, Osterman AL (2003). "Experimental determination and system level analysis of essential genes in Escherichia coli MG1655." J Bacteriol 185(19);5673-84. PMID: 13129938

GOA et al., 2001: GOA, DDB, FB, MGI, ZFIN (2001). "Gene Ontology annotation through association of InterPro records with GO terms."

Joyce et al., 2006: Joyce AR, Reed JL, White A, Edwards R, Osterman A, Baba T, Mori H, Lesely SA, Palsson BO, Agarwalla S (2006). "Experimental and computational assessment of conditionally essential genes in Escherichia coli." J Bacteriol 188(23);8259-71. PMID: 17012394

Korea10: Korea CG, Badouraly R, Prevost MC, Ghigo JM, Beloin C (2010). "Escherichia coli K-12 possesses multiple cryptic but functional chaperone-usher fimbriae with distinct surface specificities." Environ Microbiol 12(7):1957-77. PMID: 20345943

Korea11: Korea CG, Ghigo JM, Beloin C (2011). "The sweet connection: Solving the riddle of multiple sugar-binding fimbrial adhesins in Escherichia coli: Multiple E. coli fimbriae form a versatile arsenal of sugar-binding lectins potentially involved in surface-colonisation and tissue tropism." Bioessays 33(4);300-11. PMID: 21344461

Raina93: Raina S, Missiakas D, Baird L, Kumar S, Georgopoulos C (1993). "Identification and transcriptional analysis of the Escherichia coli htrE operon which is homologous to pap and related pilin operons." J Bacteriol 1993;175(16);5009-21. PMID: 8102362

Raina94: Raina S. (1994). Data submission to UniProtKB on 1994-12.

UniProt, 2009: UniProt Consortium (2009). "UniProt version 15.8 released on 2009-10-01 00:00:00." Database.

UniProt, 2010: UniProt Consortium (2010). "UniProt version 2010-11 released on 2010-11-02 00:00:00." Database.

UniProt-GOA, 2011: UniProt-GOA (2011). "Gene Ontology annotation based on manual assignment of UniProtKB keywords in UniProtKB/Swiss-Prot entries."

UniProt10: UniProt Consortium (2010). "UniProt version 2010-07 released on 2010-06-15 00:00:00." Database.

UniProt12a: UniProt Consortium (2012). "UniProt version 2012-02 released on 2012-02-29 00:00:00." Database.

UniProtGOA11: UniProt-GOA (2011). "Gene Ontology annotation based on the manual assignment of UniProtKB Subcellular Location terms in UniProtKB/Swiss-Prot entries."


Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 18.5 on Thu Dec 18, 2014, biocyc11.