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Escherichia coli K-12 substr. MG1655 Polypeptide: predicted glucosyltransferase



Gene: ycjM Accession Numbers: G6647 (EcoCyc), b1309, ECK1304

Synonyms: sucP

Regulation Summary Diagram: ?

Summary:
No information about this protein was found by a literature search conducted on October 11, 2006.

Locations: cytosol

Map Position: [1,368,240 -> 1,369,919] (29.49 centisomes)
Length: 1680 bp / 559 aa

Molecular Weight of Polypeptide: 64.186 kD (from nucleotide sequence)

Unification Links: ASAP:ABE-0004400 , EchoBASE:EB3669 , EcoGene:EG13910 , EcoliWiki:b1309 , ModBase:P76041 , OU-Microarray:b1309 , PortEco:ycjM , Pride:P76041 , Protein Model Portal:P76041 , RefSeq:NP_415825 , RegulonDB:G6647 , SMR:P76041 , String:511145.b1309 , UniProt:P76041

Relationship Links: CAZy:IN-FAMILY:GH13 , InterPro:IN-FAMILY:IPR006047 , InterPro:IN-FAMILY:IPR013780 , InterPro:IN-FAMILY:IPR013781 , InterPro:IN-FAMILY:IPR015902 , InterPro:IN-FAMILY:IPR016377 , InterPro:IN-FAMILY:IPR017853 , Panther:IN-FAMILY:PTHR10357 , Pfam:IN-FAMILY:PF00128

In Paralogous Gene Group: 123 (6 members)

GO Terms:

Biological Process: GO:0005975 - carbohydrate metabolic process Inferred by computational analysis [GOA et al., 2001]
GO:0005985 - sucrose metabolic process Inferred by computational analysis [GOA et al., 2001]
Molecular Function: GO:0003824 - catalytic activity Inferred by computational analysis [GOA et al., 2001]
GO:0009018 - sucrose phosphorylase activity Inferred by computational analysis [GOA01, GOA et al., 2001]
GO:0016740 - transferase activity Inferred by computational analysis [UniProt-GOA, 2011]
GO:0016757 - transferase activity, transferring glycosyl groups Inferred by computational analysis [UniProt-GOA, 2011]
GO:0043169 - cation binding Inferred by computational analysis [GOA et al., 2001]
Cellular Component: GO:0005829 - cytosol Inferred by computational analysis [Diaz-Mejia et al., 2009]

MultiFun Terms: metabolism degradation of macromolecules polysaccharides

Essentiality data for ycjM knockouts: ?

Growth Medium Growth? T (°C) O2 pH Osm/L Growth Observations
LB enriched Yes 37 Aerobic 6.95   Yes [Gerdes et al., 2003, Comment 1]
LB Lennox Yes 37 Aerobic 7   Yes [Baba et al., 2006, Comment 2]
M9 medium with 1% glycerol Yes 37 Aerobic 7.2 0.35 Yes [Joyce et al., 2006, Comment 3]
MOPS medium with 0.4% glucose Yes 37 Aerobic 7.2 0.22 Yes [Baba et al., 2006, Comment 2]

Credits:
Last-Curated ? 11-Oct-2006 by Keseler I , SRI International


Gene Local Context (not to scale): ?

Transcription Unit:

Notes:

History:
Peter D. Karp on Wed Jan 18, 2006:
Gene left-end position adjusted based on analysis performed in the 2005 E. coli annotation update [Riley06 ].
Markus Krummenacker on Tue Oct 14, 1997:
Gene object created from Blattner lab Genbank (v. M52) entry.


References

Baba et al., 2006: Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, Baba M, Datsenko KA, Tomita M, Wanner BL, Mori H (2006). "Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection." Mol Syst Biol 2;2006.0008. PMID: 16738554

Diaz-Mejia et al., 2009: Diaz-Mejia JJ, Babu M, Emili A (2009). "Computational and experimental approaches to chart the Escherichia coli cell-envelope-associated proteome and interactome." FEMS Microbiol Rev 33(1);66-97. PMID: 19054114

Gerdes et al., 2003: Gerdes SY, Scholle MD, Campbell JW, Balazsi G, Ravasz E, Daugherty MD, Somera AL, Kyrpides NC, Anderson I, Gelfand MS, Bhattacharya A, Kapatral V, D'Souza M, Baev MV, Grechkin Y, Mseeh F, Fonstein MY, Overbeek R, Barabasi AL, Oltvai ZN, Osterman AL (2003). "Experimental determination and system level analysis of essential genes in Escherichia coli MG1655." J Bacteriol 185(19);5673-84. PMID: 13129938

GOA et al., 2001: GOA, DDB, FB, MGI, ZFIN (2001). "Gene Ontology annotation through association of InterPro records with GO terms."

GOA01: GOA, MGI (2001). "Gene Ontology annotation based on Enzyme Commission mapping." Genomics 74;121-128.

Joyce et al., 2006: Joyce AR, Reed JL, White A, Edwards R, Osterman A, Baba T, Mori H, Lesely SA, Palsson BO, Agarwalla S (2006). "Experimental and computational assessment of conditionally essential genes in Escherichia coli." J Bacteriol 188(23);8259-71. PMID: 17012394

Riley06: Riley M, Abe T, Arnaud MB, Berlyn MK, Blattner FR, Chaudhuri RR, Glasner JD, Horiuchi T, Keseler IM, Kosuge T, Mori H, Perna NT, Plunkett G, Rudd KE, Serres MH, Thomas GH, Thomson NR, Wishart D, Wanner BL (2006). "Escherichia coli K-12: a cooperatively developed annotation snapshot--2005." Nucleic Acids Res 34(1);1-9. PMID: 16397293

UniProt-GOA, 2011: UniProt-GOA (2011). "Gene Ontology annotation based on manual assignment of UniProtKB keywords in UniProtKB/Swiss-Prot entries."


Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 18.5 on Thu Dec 18, 2014, biocyc11.