Escherichia coli K-12 substr. MG1655 Polypeptide: predicted hydrolase

Gene: ycjY Accession Numbers: G6663 (EcoCyc), b1327, ECK1324

Regulation Summary Diagram: ?

Regulation summary diagram for ycjY

Overexpression of YcjY from a plasmid causes a filamentous phenotype [Burke13].

Citations: [ParadisBleau14]

Gene Citations: [Shimada13]

Map Position: [1,388,957 <- 1,389,889] (29.94 centisomes, 108°)
Length: 933 bp / 310 aa

Molecular Weight of Polypeptide: 34.117 kD (from nucleotide sequence)

Unification Links: ASAP:ABE-0004453 , DIP:DIP-11616N , EchoBASE:EB3681 , EcoGene:EG13922 , EcoliWiki:b1327 , ModBase:P76049 , OU-Microarray:b1327 , PortEco:ycjY , Protein Model Portal:P76049 , RefSeq:NP_415843 , RegulonDB:G6663 , SMR:P76049 , String:511145.b1327 , UniProt:P76049

Relationship Links: InterPro:IN-FAMILY:IPR029058 , InterPro:IN-FAMILY:IPR029059 , Pfam:IN-FAMILY:PF12695

Genetic Regulation Schematic: ?

Genetic regulation schematic for ycjY

GO Terms:

Biological Process: GO:0051301 - cell division Inferred from experiment [Burke13]

Gene Class: ORFs

Essentiality data for ycjY knockouts: ?

Growth Medium Growth? T (°C) O2 pH Osm/L Growth Observations
LB enriched Yes 37 Aerobic 6.95   Yes [Gerdes03, Comment 1]
LB Lennox Yes 37 Aerobic 7   Yes [Baba06, Comment 2]
M9 medium with 1% glycerol Yes 37 Aerobic 7.2 0.35 Yes [Joyce06, Comment 3]
MOPS medium with 0.4% glucose Yes 37 Aerobic 7.2 0.22 Yes [Baba06, Comment 2]

Last-Curated ? 15-Apr-2013 by Keseler I , SRI International

Gene Local Context (not to scale): ?

Gene local context diagram

Transcription Units:

Transcription-unit diagram

Transcription-unit diagram

Transcription-unit diagram

Transcription-unit diagram

Transcription-unit diagram


Markus Krummenacker on Tue Oct 14, 1997:
Gene object created from Blattner lab Genbank (v. M52) entry.


Baba06: Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, Baba M, Datsenko KA, Tomita M, Wanner BL, Mori H (2006). "Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection." Mol Syst Biol 2;2006.0008. PMID: 16738554

Burke13: Burke C, Liu M, Britton W, Triccas JA, Thomas T, Smith AL, Allen S, Salomon R, Harry E (2013). "Harnessing single cell sorting to identify cell division genes and regulators in bacteria." PLoS One 8(4);e60964. PMID: 23565292

Gerdes03: Gerdes SY, Scholle MD, Campbell JW, Balazsi G, Ravasz E, Daugherty MD, Somera AL, Kyrpides NC, Anderson I, Gelfand MS, Bhattacharya A, Kapatral V, D'Souza M, Baev MV, Grechkin Y, Mseeh F, Fonstein MY, Overbeek R, Barabasi AL, Oltvai ZN, Osterman AL (2003). "Experimental determination and system level analysis of essential genes in Escherichia coli MG1655." J Bacteriol 185(19);5673-84. PMID: 13129938

Joyce06: Joyce AR, Reed JL, White A, Edwards R, Osterman A, Baba T, Mori H, Lesely SA, Palsson BO, Agarwalla S (2006). "Experimental and computational assessment of conditionally essential genes in Escherichia coli." J Bacteriol 188(23);8259-71. PMID: 17012394

ParadisBleau14: Paradis-Bleau C, Kritikos G, Orlova K, Typas A, Bernhardt TG (2014). "A genome-wide screen for bacterial envelope biogenesis mutants identifies a novel factor involved in cell wall precursor metabolism." PLoS Genet 10(1);e1004056. PMID: 24391520

Shimada13: Shimada T, Yamazaki K, Ishihama A (2013). "Novel regulator PgrR for switch control of peptidoglycan recycling in Escherichia coli." Genes Cells 18(2);123-34. PMID: 23301696

Other References Related to Gene Regulation

Huerta03: Huerta AM, Collado-Vides J (2003). "Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals." J Mol Biol 333(2);261-78. PMID: 14529615

Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 19.0 on Mon Oct 5, 2015, biocyc12.