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Escherichia coli K-12 substr. MG1655 Polypeptide: predicted fimbrial-like adhesin protein



Gene: ydeR Accession Numbers: G6793 (EcoCyc), b1503, ECK1496

Regulation Summary Diagram: ?

Summary:
No information about this protein was found by a literature search conducted on July 24, 2007.

Locations: extracellular space, pilus

Map Position: [1,585,817 <- 1,586,320] (34.18 centisomes)
Length: 504 bp / 167 aa

Molecular Weight of Polypeptide: 18.144 kD (from nucleotide sequence)

Unification Links: ASAP:ABE-0005008 , DIP:DIP-11685N , EchoBASE:EB3561 , EcoGene:EG13800 , EcoliWiki:b1503 , ModBase:P77294 , OU-Microarray:b1503 , PortEco:ydeR , Protein Model Portal:P77294 , RefSeq:NP_416020 , RegulonDB:G6793 , SMR:P77294 , String:511145.b1503 , UniProt:P77294

Relationship Links: InterPro:IN-FAMILY:IPR000259 , InterPro:IN-FAMILY:IPR008966 , Pfam:IN-FAMILY:PF00419

In Paralogous Gene Group: 43 (37 members)

GO Terms:

Biological Process: GO:0007155 - cell adhesion Inferred by computational analysis [GOA01]
Cellular Component: GO:0005576 - extracellular region Inferred by computational analysis [DiazMejia09]
GO:0009289 - pilus Inferred by computational analysis [UniProtGOA11, UniProtGOA11a, GOA01]

MultiFun Terms: cell structure pilus

Essentiality data for ydeR knockouts: ?

Growth Medium Growth? T (°C) O2 pH Osm/L Growth Observations
LB enriched Yes 37 Aerobic 6.95   Yes [Gerdes03, Comment 1]
LB Lennox Yes 37 Aerobic 7   Yes [Baba06, Comment 2]
M9 medium with 1% glycerol Yes 37 Aerobic 7.2 0.35 Yes [Joyce06, Comment 3]
MOPS medium with 0.4% glucose Yes 37 Aerobic 7.2 0.22 Yes [Baba06, Comment 2]

Credits:
Last-Curated ? 24-Jul-2007 by Keseler I , SRI International


Sequence Features

Feature Class Location Citations Comment
Signal-Sequence 1 -> 23
[UniProt10a]
UniProt: Non-Experimental Qualifier: potential;
Chain 24 -> 167
[UniProt09]
UniProt: Uncharacterized fimbrial-like protein ydeR;
Disulfide-Bond-Site 77, 39
[UniProt10a]
UniProt: Non-Experimental Qualifier: probable;


Gene Local Context (not to scale): ?

Transcription Unit:

Notes:

History:
Markus Krummenacker on Tue Oct 14, 1997:
Gene object created from Blattner lab Genbank (v. M52) entry.


References

Baba06: Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, Baba M, Datsenko KA, Tomita M, Wanner BL, Mori H (2006). "Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection." Mol Syst Biol 2;2006.0008. PMID: 16738554

DiazMejia09: Diaz-Mejia JJ, Babu M, Emili A (2009). "Computational and experimental approaches to chart the Escherichia coli cell-envelope-associated proteome and interactome." FEMS Microbiol Rev 33(1);66-97. PMID: 19054114

Gerdes03: Gerdes SY, Scholle MD, Campbell JW, Balazsi G, Ravasz E, Daugherty MD, Somera AL, Kyrpides NC, Anderson I, Gelfand MS, Bhattacharya A, Kapatral V, D'Souza M, Baev MV, Grechkin Y, Mseeh F, Fonstein MY, Overbeek R, Barabasi AL, Oltvai ZN, Osterman AL (2003). "Experimental determination and system level analysis of essential genes in Escherichia coli MG1655." J Bacteriol 185(19);5673-84. PMID: 13129938

GOA01: GOA, DDB, FB, MGI, ZFIN (2001). "Gene Ontology annotation through association of InterPro records with GO terms."

Joyce06: Joyce AR, Reed JL, White A, Edwards R, Osterman A, Baba T, Mori H, Lesely SA, Palsson BO, Agarwalla S (2006). "Experimental and computational assessment of conditionally essential genes in Escherichia coli." J Bacteriol 188(23);8259-71. PMID: 17012394

UniProt09: UniProt Consortium (2009). "UniProt version 15.8 released on 2009-10-01 00:00:00." Database.

UniProt10a: UniProt Consortium (2010). "UniProt version 2010-07 released on 2010-06-15 00:00:00." Database.

UniProtGOA11: UniProt-GOA (2011). "Gene Ontology annotation based on the manual assignment of UniProtKB Subcellular Location terms in UniProtKB/Swiss-Prot entries."

UniProtGOA11a: UniProt-GOA (2011). "Gene Ontology annotation based on manual assignment of UniProtKB keywords in UniProtKB/Swiss-Prot entries."


Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 18.5 on Thu Dec 18, 2014, biocyc13.