twitter

Escherichia coli K-12 substr. MG1655 Polypeptide: protein potentially involved in copper homeostasis



Gene: cutC Accession Numbers: G7024 (EcoCyc), b1874, ECK1875

Regulation Summary Diagram: ?

Regulation summary diagram for cutC

Summary:
A combination of mutations in nlpE and cutC results in increased sensitivity to copper [Gupta95]. The copper sensitivity phenotype was later found to be due to disruption of MicL downregulation of Lpp [Guo14].

Locations: cytosol

Map Position: [1,956,544 <- 1,957,290] (42.17 centisomes, 152°)
Length: 747 bp / 248 aa

Molecular Weight of Polypeptide: 26.762 kD (from nucleotide sequence)

Unification Links: ASAP:ABE-0006252 , EchoBASE:EB2790 , EcoGene:EG12956 , EcoliWiki:b1874 , ModBase:P67826 , OU-Microarray:b1874 , PortEco:cutC , Pride:P67826 , Protein Model Portal:P67826 , RefSeq:YP_025309 , RegulonDB:G7024 , SMR:P67826 , String:511145.b1874 , Swiss-Model:P67826 , UniProt:P67826

Relationship Links: InterPro:IN-FAMILY:IPR005627 , InterPro:IN-FAMILY:IPR023648 , Panther:IN-FAMILY:PTHR12598 , Pfam:IN-FAMILY:PF03932

GO Terms:

Biological Process: GO:0006878 - cellular copper ion homeostasis Inferred by computational analysis Inferred from experiment [Gupta95, GOA06]
GO:0046688 - response to copper ion Inferred from experiment [Gupta95]
GO:0055070 - copper ion homeostasis Inferred by computational analysis [GOA01a]
Molecular Function: GO:0005507 - copper ion binding Inferred by computational analysis [GOA01a]
Cellular Component: GO:0005737 - cytoplasm Inferred by computational analysis [UniProtGOA11, UniProtGOA11a, GOA06]
GO:0005829 - cytosol Inferred by computational analysis [DiazMejia09]

Gene Class: UNCLASSIFIED

Essentiality data for cutC knockouts: ?

Growth Medium Growth? T (°C) O2 pH Osm/L Growth Observations
LB Lennox Yes 37 Aerobic 7   Yes [Baba06, Comment 1]
M9 medium with 1% glycerol Yes 37 Aerobic 7.2 0.35 Yes [Joyce06, Comment 2]
MOPS medium with 0.4% glucose Yes 37 Aerobic 7.2 0.22 Yes [Baba06, Comment 1]

Credits:
Last-Curated ? 08-Oct-2014 by Keseler I , SRI International


Sequence Features

Protein sequence of protein potentially involved in copper homeostasis with features indicated

Feature Class Location Citations Comment
Sequence-Conflict 18
[Gupta96, UniProt10]
UniProt: (in Ref. 1; AAA89202);


Gene Local Context (not to scale): ?

Gene local context diagram

Transcription Unit:

Transcription-unit diagram

Notes:

History:
Ingrid Keseler on Wed Oct 8, 2014:
Gene start position corrected based on phylogenetic conservation and ribosome profiling data reported by [Guo14 ].
Socorro Gama-Castro on Wed Nov 8, 2006:
The start site of the cutC gene was originally assigned solely on the basis of sequence considerations [Blattner97 , Sawers89 ]. However, it was changed because [Gupta95 ] attested that the real start site is actually located 306 bp downstream. The demonstration is based on identification of both a plausible ribosome binding site and one promoter at an appropriate distance from the new start site. The promoter was identified using primer extension analysis [Dartigalongue01 ].
Peter D. Karp on Wed Jan 18, 2006:
Gene right-end position adjusted based on analysis performed in the 2005 E. coli annotation update [Riley06 ].
Markus Krummenacker on Tue Oct 14, 1997:
Gene object created from Blattner lab Genbank (v. M52) entry.


References

Baba06: Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, Baba M, Datsenko KA, Tomita M, Wanner BL, Mori H (2006). "Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection." Mol Syst Biol 2;2006.0008. PMID: 16738554

Blattner97: Blattner FR, Plunkett G, Bloch CA, Perna NT, Burland V, Riley M, Collado-Vides J, Glasner JD, Rode CK, Mayhew GF, Gregor J, Davis NW, Kirkpatrick HA, Goeden MA, Rose DJ, Mau B, Shao Y (1997). "The complete genome sequence of Escherichia coli K-12." Science 277(5331);1453-74. PMID: 9278503

Dartigalongue01: Dartigalongue C, Missiakas D, Raina S (2001). "Characterization of the Escherichia coli sigma E regulon." J Biol Chem 276(24);20866-75. PMID: 11274153

DiazMejia09: Diaz-Mejia JJ, Babu M, Emili A (2009). "Computational and experimental approaches to chart the Escherichia coli cell-envelope-associated proteome and interactome." FEMS Microbiol Rev 33(1);66-97. PMID: 19054114

GOA01a: GOA, DDB, FB, MGI, ZFIN (2001). "Gene Ontology annotation through association of InterPro records with GO terms."

GOA06: GOA, SIB (2006). "Electronic Gene Ontology annotations created by transferring manual GO annotations between orthologous microbial proteins."

Guo14: Guo MS, Updegrove TB, Gogol EB, Shabalina SA, Gross CA, Storz G (2014). "MicL, a new σE-dependent sRNA, combats envelope stress by repressing synthesis of Lpp, the major outer membrane lipoprotein." Genes Dev 28(14);1620-34. PMID: 25030700

Gupta95: Gupta SD, Lee BT, Camakaris J, Wu HC (1995). "Identification of cutC and cutF (nlpE) genes involved in copper tolerance in Escherichia coli." J Bacteriol 1995;177(15);4207-15. PMID: 7635807

Gupta96: Gupta S.D., Wu H.C. (1996). "Complete sequence of the E. coli cutC gene." Data submission to EMBL/GenBank/DDBJ databases on 1996-02.

Joyce06: Joyce AR, Reed JL, White A, Edwards R, Osterman A, Baba T, Mori H, Lesely SA, Palsson BO, Agarwalla S (2006). "Experimental and computational assessment of conditionally essential genes in Escherichia coli." J Bacteriol 188(23);8259-71. PMID: 17012394

Riley06: Riley M, Abe T, Arnaud MB, Berlyn MK, Blattner FR, Chaudhuri RR, Glasner JD, Horiuchi T, Keseler IM, Kosuge T, Mori H, Perna NT, Plunkett G, Rudd KE, Serres MH, Thomas GH, Thomson NR, Wishart D, Wanner BL (2006). "Escherichia coli K-12: a cooperatively developed annotation snapshot--2005." Nucleic Acids Res 34(1);1-9. PMID: 16397293

Sawers89: Sawers G, Bock A (1989). "Novel transcriptional control of the pyruvate formate-lyase gene: upstream regulatory sequences and multiple promoters regulate anaerobic expression." J Bacteriol 1989;171(5);2485-98. PMID: 2651404

UniProt10: UniProt Consortium (2010). "UniProt version 2010-11 released on 2010-11-02 00:00:00." Database.

UniProtGOA11: UniProt-GOA (2011). "Gene Ontology annotation based on the manual assignment of UniProtKB Subcellular Location terms in UniProtKB/Swiss-Prot entries."

UniProtGOA11a: UniProt-GOA (2011). "Gene Ontology annotation based on manual assignment of UniProtKB keywords in UniProtKB/Swiss-Prot entries."


Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 19.0 on Mon Apr 27, 2015, BIOCYC14B.