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Escherichia coli K-12 substr. MG1655 Transporter: L-alanine exporter



Gene: alaE Accession Numbers: G7399 (EcoCyc), b2670, ECK2664

Synonyms: ygaW

Regulation Summary Diagram: ?

Summary:
alaE encodes an inducible L-alanine exporter in E.coli K-12. Disruption of alaE in an L-alanine non-metabolising strain results in the significant accumulation of intra-cellular alanine and this phenotype can be relieved by the over-expression of alaE from a plasmid [Hori11]. The expression of alaE is induced by the dipeptide, L-alanyl-L-alanine [Hori11]. YgaW exhibits stereopecificity for L-alanine [Hori11]. The physiological role of AlaE is not clear but it may act to prevent the excessive accumulation of alanine in a peptide rich environment such as that found in the mammalian intestine.

alaE: alanine export

Citations: [Moen09]

Locations: inner membrane

Map Position: [2,797,186 -> 2,797,635] (60.29 centisomes)
Length: 450 bp / 149 aa

Molecular Weight of Polypeptide: 16.949 kD (from nucleotide sequence)

Unification Links: ASAP:ABE-0008793 , EchoBASE:EB3297 , EcoGene:EG13525 , EcoliWiki:b2670 , OU-Microarray:b2670 , PortEco:ygaW , Pride:P64550 , Protein Model Portal:P64550 , RefSeq:NP_417156 , RegulonDB:G7399 , String:511145.b2670 , UniProt:P64550

Relationship Links: InterPro:IN-FAMILY:IPR010574 , Pfam:IN-FAMILY:PF06610 , ProDom:IN-FAMILY:PD090021

Gene-Reaction Schematic: ?

GO Terms:

Biological Process: GO:0015807 - L-amino acid transport Inferred from experiment [Hori11]
GO:0032973 - amino acid export Inferred from experiment Inferred by computational analysis [GOA06, Hori11]
GO:0033554 - cellular response to stress Inferred from experiment [Moen09]
GO:1902475 - L-alpha-amino acid transmembrane transport Inferred by computational analysis Inferred from experiment [Hori11, GOA06, GOA01a]
GO:0006810 - transport Inferred by computational analysis [UniProtGOA11a]
GO:0006865 - amino acid transport Inferred by computational analysis [UniProtGOA11a]
Molecular Function: GO:0034639 - L-amino acid efflux transmembrane transporter activity Inferred from experiment Inferred by computational analysis [GOA06, GOA01a, Hori11]
Cellular Component: GO:0005886 - plasma membrane Inferred from experiment Inferred by computational analysis [UniProtGOA11, UniProtGOA11a, DiazMejia09, Daley05, Hori11]
GO:0016021 - integral component of membrane Inferred from experiment Inferred by computational analysis [UniProtGOA11a, GOA01a, Hori11]
GO:0005887 - integral component of plasma membrane Inferred by computational analysis [GOA06]
GO:0016020 - membrane Inferred by computational analysis [UniProtGOA11a]

MultiFun Terms: cell processes defense/survival
transport Transporters of Unknown Classification

Essentiality data for alaE knockouts: ?

Growth Medium Growth? T (°C) O2 pH Osm/L Growth Observations
LB enriched Yes 37 Aerobic 6.95   Yes [Gerdes03, Comment 1]
LB Lennox Yes 37 Aerobic 7   Yes [Baba06, Comment 2]
M9 medium with 1% glycerol Yes 37 Aerobic 7.2 0.35 Yes [Joyce06, Comment 3]
MOPS medium with 0.4% glucose Yes 37 Aerobic 7.2 0.22 Yes [Baba06, Comment 2]

Credits:
Curated 09-Nov-2009 by Keseler I , SRI International
Last-Curated ? 10-May-2011 by Mackie A , Macquarie University


Enzymatic reaction of: L-alanine exporter


Sequence Features

Feature Class Location Citations Comment
Transmembrane-Region 16 -> 36
[UniProt10a]
UniProt: Helical;; Non-Experimental Qualifier: potential;
Transmembrane-Region 46 -> 66
[UniProt10a]
UniProt: Helical;; Non-Experimental Qualifier: potential;
Transmembrane-Region 85 -> 105
[UniProt10a]
UniProt: Helical;; Non-Experimental Qualifier: potential;
Transmembrane-Region 112 -> 132
[UniProt10a]
UniProt: Helical;; Non-Experimental Qualifier: potential;


Gene Local Context (not to scale): ?

Transcription Unit:

Notes:

History:
Peter D. Karp on Thu Jan 16, 2003:
Predicted gene function revised as a result of E. coli genome reannotation by Serres et al. [Serres01 ].
Markus Krummenacker on Tue Oct 14, 1997:
Gene object created from Blattner lab Genbank (v. M52) entry.


References

Baba06: Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, Baba M, Datsenko KA, Tomita M, Wanner BL, Mori H (2006). "Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection." Mol Syst Biol 2;2006.0008. PMID: 16738554

Daley05: Daley DO, Rapp M, Granseth E, Melen K, Drew D, von Heijne G (2005). "Global topology analysis of the Escherichia coli inner membrane proteome." Science 308(5726);1321-3. PMID: 15919996

DiazMejia09: Diaz-Mejia JJ, Babu M, Emili A (2009). "Computational and experimental approaches to chart the Escherichia coli cell-envelope-associated proteome and interactome." FEMS Microbiol Rev 33(1);66-97. PMID: 19054114

Gerdes03: Gerdes SY, Scholle MD, Campbell JW, Balazsi G, Ravasz E, Daugherty MD, Somera AL, Kyrpides NC, Anderson I, Gelfand MS, Bhattacharya A, Kapatral V, D'Souza M, Baev MV, Grechkin Y, Mseeh F, Fonstein MY, Overbeek R, Barabasi AL, Oltvai ZN, Osterman AL (2003). "Experimental determination and system level analysis of essential genes in Escherichia coli MG1655." J Bacteriol 185(19);5673-84. PMID: 13129938

GOA01a: GOA, DDB, FB, MGI, ZFIN (2001). "Gene Ontology annotation through association of InterPro records with GO terms."

GOA06: GOA, SIB (2006). "Electronic Gene Ontology annotations created by transferring manual GO annotations between orthologous microbial proteins."

Hori11: Hori H, Yoneyama H, Tobe R, Ando T, Isogai E, Katsumata R (2011). "Inducible L-alanine exporter encoded by the novel gene ygaW (alaE) in Escherichia coli." Appl Environ Microbiol 77(12);4027-34. PMID: 21531828

Joyce06: Joyce AR, Reed JL, White A, Edwards R, Osterman A, Baba T, Mori H, Lesely SA, Palsson BO, Agarwalla S (2006). "Experimental and computational assessment of conditionally essential genes in Escherichia coli." J Bacteriol 188(23);8259-71. PMID: 17012394

Moen09: Moen B, Janbu AO, Langsrud S, Langsrud O, Hobman JL, Constantinidou C, Kohler A, Rudi K (2009). "Global responses of Escherichia coli to adverse conditions determined by microarrays and FT-IR spectroscopy." Can J Microbiol 55(6);714-28. PMID: 19767843

Serres01: Serres MH, Gopal S, Nahum LA, Liang P, Gaasterland T, Riley M (2001). "A functional update of the Escherichia coli K-12 genome." Genome Biol 2(9);RESEARCH0035. PMID: 11574054

UniProt10a: UniProt Consortium (2010). "UniProt version 2010-07 released on 2010-06-15 00:00:00." Database.

UniProtGOA11: UniProt-GOA (2011). "Gene Ontology annotation based on the manual assignment of UniProtKB Subcellular Location terms in UniProtKB/Swiss-Prot entries."

UniProtGOA11a: UniProt-GOA (2011). "Gene Ontology annotation based on manual assignment of UniProtKB keywords in UniProtKB/Swiss-Prot entries."


Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 18.5 on Fri Nov 28, 2014, biocyc12.