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Escherichia coli K-12 substr. MG1655 Polypeptide: predicted anti-terminator regulatory protein



Gene: ygcP Accession Numbers: G7434 (EcoCyc), b2768, ECK2763

Regulation Summary Diagram: ?

Regulation summary diagram for ygcP

Summary:
No information about this protein was found by a literature search conducted on April 26, 2011.

Locations: cytosol

Map Position: [2,892,218 -> 2,892,793] (62.34 centisomes, 224°)
Length: 576 bp / 191 aa

Molecular Weight of Polypeptide: 20.786 kD (from nucleotide sequence)

Unification Links: ASAP:ABE-0009074 , DIP:DIP-12132N , EchoBASE:EB2924 , EcoGene:EG13123 , EcoliWiki:b2768 , Mint:MINT-1221014 , ModBase:Q46906 , OU-Microarray:b2768 , PortEco:ygcP , Pride:Q46906 , Protein Model Portal:Q46906 , RefSeq:NP_417248 , RegulonDB:G7434 , SMR:Q46906 , String:511145.b2768 , UniProt:Q46906

Relationship Links: InterPro:IN-FAMILY:IPR006699 , Pfam:IN-FAMILY:PF04309

GO Terms:

Biological Process: GO:0006355 - regulation of transcription, DNA-templated Inferred by computational analysis [GOA01a]
GO:0009607 - response to biotic stimulus Inferred by computational analysis [GOA01a]
Molecular Function: GO:0005515 - protein binding Inferred from experiment [Butland05, Arifuzzaman06]
Cellular Component: GO:0005829 - cytosol Inferred by computational analysis [DiazMejia09]

Gene Class: ORFs Conserved-ORFs

Essentiality data for ygcP knockouts: ?

Growth Medium Growth? T (°C) O2 pH Osm/L Growth Observations
LB Lennox Yes 37 Aerobic 7   Yes [Baba06, Comment 1]
M9 medium with 1% glycerol Yes 37 Aerobic 7.2 0.35 Yes [Joyce06, Comment 2]
MOPS medium with 0.4% glucose Yes 37 Aerobic 7.2 0.22 Yes [Baba06, Comment 1]

Credits:
Last-Curated ? 26-Apr-2011 by Keseler I , SRI International


Gene Local Context (not to scale): ?

Gene local context diagram

Transcription Unit:

Transcription-unit diagram

Notes:

History:
Markus Krummenacker on Tue Oct 14, 1997:
Gene object created from Blattner lab Genbank (v. M52) entry.


References

Arifuzzaman06: Arifuzzaman M, Maeda M, Itoh A, Nishikata K, Takita C, Saito R, Ara T, Nakahigashi K, Huang HC, Hirai A, Tsuzuki K, Nakamura S, Altaf-Ul-Amin M, Oshima T, Baba T, Yamamoto N, Kawamura T, Ioka-Nakamichi T, Kitagawa M, Tomita M, Kanaya S, Wada C, Mori H (2006). "Large-scale identification of protein-protein interaction of Escherichia coli K-12." Genome Res 16(5);686-91. PMID: 16606699

Baba06: Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, Baba M, Datsenko KA, Tomita M, Wanner BL, Mori H (2006). "Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection." Mol Syst Biol 2;2006.0008. PMID: 16738554

Butland05: Butland G, Peregrin-Alvarez JM, Li J, Yang W, Yang X, Canadien V, Starostine A, Richards D, Beattie B, Krogan N, Davey M, Parkinson J, Greenblatt J, Emili A (2005). "Interaction network containing conserved and essential protein complexes in Escherichia coli." Nature 433(7025);531-7. PMID: 15690043

DiazMejia09: Diaz-Mejia JJ, Babu M, Emili A (2009). "Computational and experimental approaches to chart the Escherichia coli cell-envelope-associated proteome and interactome." FEMS Microbiol Rev 33(1);66-97. PMID: 19054114

GOA01a: GOA, DDB, FB, MGI, ZFIN (2001). "Gene Ontology annotation through association of InterPro records with GO terms."

Joyce06: Joyce AR, Reed JL, White A, Edwards R, Osterman A, Baba T, Mori H, Lesely SA, Palsson BO, Agarwalla S (2006). "Experimental and computational assessment of conditionally essential genes in Escherichia coli." J Bacteriol 188(23);8259-71. PMID: 17012394


Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 19.0 on Tue Mar 31, 2015, biocyc12.