Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
twitter

Escherichia coli K-12 substr. MG1655 Polypeptide: conserved protein



Gene: yffB Accession Numbers: EG11147 (EcoCyc), b2471, ECK2466

Regulation Summary Diagram: ?

Summary:
No information about this protein was found by a literature search conducted on April 9, 2008.

Gene Citations: [Bouvier92]

Locations: cytosol

Map Position: [2,589,269 -> 2,589,625] (55.81 centisomes)
Length: 357 bp / 118 aa

Molecular Weight of Polypeptide: 13.601 kD (from nucleotide sequence)

Unification Links: ASAP:ABE-0008140 , DIP:DIP-12024N , EchoBASE:EB1137 , EcoGene:EG11147 , EcoliWiki:b2471 , Mint:MINT-1255719 , ModBase:P24178 , OU-Microarray:b2471 , PortEco:yffB , Pride:P24178 , Protein Model Portal:P24178 , RefSeq:NP_416966 , RegulonDB:EG11147 , SMR:P24178 , String:511145.b2471 , UniProt:P24178

Relationship Links: InterPro:IN-FAMILY:IPR006504 , InterPro:IN-FAMILY:IPR006660 , InterPro:IN-FAMILY:IPR012336 , Pfam:IN-FAMILY:PF03960 , Prosite:IN-FAMILY:PS51353

GO Terms:

Cellular Component: GO:0005829 - cytosol Inferred from experiment Inferred by computational analysis [DiazMejia09, Ishihama08]

Gene Class: ORFs

Essentiality data for yffB knockouts: ?

Growth Medium Growth? T (°C) O2 pH Osm/L Growth Observations
LB Lennox Yes 37 Aerobic 7   Yes [Baba06, Comment 1]
M9 medium with 1% glycerol Yes 37 Aerobic 7.2 0.35 Yes [Joyce06, Comment 2]
MOPS medium with 0.4% glucose Yes 37 Aerobic 7.2 0.22 Yes [Baba06, Comment 1]

Credits:
Last-Curated ? 09-Apr-2008 by Keseler I , SRI International


Gene Local Context (not to scale): ?

Transcription Units:

Notes:

History:
Peter D. Karp on Thu Jan 16, 2003:
Predicted gene function revised as a result of E. coli genome reannotation by Serres et al. [Serres01 ].
10/20/97 Gene b2471 from Blattner lab Genbank (v. M52) entry merged into EcoCyc gene EG11147; confirmed by SwissProt match.


References

Baba06: Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, Baba M, Datsenko KA, Tomita M, Wanner BL, Mori H (2006). "Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection." Mol Syst Biol 2;2006.0008. PMID: 16738554

Bouvier92: Bouvier J, Richaud C, Higgins W, Bogler O, Stragier P (1992). "Cloning, characterization, and expression of the dapE gene of Escherichia coli." J Bacteriol 1992;174(16);5265-71. PMID: 1644752

DiazMejia09: Diaz-Mejia JJ, Babu M, Emili A (2009). "Computational and experimental approaches to chart the Escherichia coli cell-envelope-associated proteome and interactome." FEMS Microbiol Rev 33(1);66-97. PMID: 19054114

Ishihama08: Ishihama Y, Schmidt T, Rappsilber J, Mann M, Hartl FU, Kerner MJ, Frishman D (2008). "Protein abundance profiling of the Escherichia coli cytosol." BMC Genomics 9;102. PMID: 18304323

Joyce06: Joyce AR, Reed JL, White A, Edwards R, Osterman A, Baba T, Mori H, Lesely SA, Palsson BO, Agarwalla S (2006). "Experimental and computational assessment of conditionally essential genes in Escherichia coli." J Bacteriol 188(23);8259-71. PMID: 17012394

Serres01: Serres MH, Gopal S, Nahum LA, Liang P, Gaasterland T, Riley M (2001). "A functional update of the Escherichia coli K-12 genome." Genome Biol 2(9);RESEARCH0035. PMID: 11574054


Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 18.5 on Mon Dec 22, 2014, BIOCYC13A.