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Escherichia coli K-12 substr. MG1655 Polypeptide: putative GTP-binding protein



Gene: yihF Accession Numbers: EG11832 (EcoCyc), b3861, ECK3853

Regulation Summary Diagram: ?

Summary:
No information about this protein was found by a literature search conducted on September 6, 2006.

Map Position: [4,042,222 -> 4,043,652] (87.12 centisomes)
Length: 1431 bp / 476 aa

Molecular Weight of Polypeptide: 52.637 kD (from nucleotide sequence)

Unification Links: ASAP:ABE-0012609 , EchoBASE:EB1779 , EcoGene:EG11832 , EcoliWiki:b3861 , OU-Microarray:b3861 , PortEco:yihF , Pride:P32128 , Protein Model Portal:P32128 , RefSeq:NP_418298 , RegulonDB:EG11832 , String:511145.b3861 , UniProt:P32128

Relationship Links: InterPro:IN-FAMILY:IPR010352 , Pfam:IN-FAMILY:PF06097

In Paralogous Gene Group: 559 (2 members)

Gene Class: ORFs Conserved-ORFs

Essentiality data for yihF knockouts: ?

Growth Medium Growth? T (°C) O2 pH Osm/L Growth Observations
LB Lennox Yes 37 Aerobic 7   Yes [Baba06, Comment 1]
M9 medium with 1% glycerol Yes 37 Aerobic 7.2 0.35 Yes [Joyce06, Comment 2]
MOPS medium with 0.4% glucose Yes 37 Aerobic 7.2 0.22 Yes [Baba06, Comment 1]

Credits:
Last-Curated ? 06-Sep-2006 by Keseler I , SRI International


Sequence Features

Feature Class Location Citations Comment
Signal-Sequence 1 -> 24
[UniProt10a]
UniProt: Non-Experimental Qualifier: potential;
Chain 25 -> 476
[UniProt09]
UniProt: Uncharacterized protein yihF;
Sequence-Conflict 226
[Belin94, UniProt10]
Alternate sequence: E → Q; UniProt: (in Ref. 1; CAA56737);
Sequence-Conflict 300
[Plunkett93, UniProt10]
Alternate sequence: R → A; UniProt: (in Ref. 2; AAB02996);
Sequence-Conflict 316
[Plunkett93, UniProt10]
Alternate sequence: A → M; UniProt: (in Ref. 2; AAB02996);
Sequence-Conflict 443
[Belin94, UniProt10]
Alternate sequence: T → N; UniProt: (in Ref. 1; CAA56737);


Gene Local Context (not to scale): ?

Transcription Unit:

Notes:

History:
Peter D. Karp on Wed Jan 18, 2006:
Gene left-end position adjusted based on analysis performed in the 2005 E. coli annotation update [Riley06 ].
Peter D. Karp on Thu Jan 16, 2003:
Predicted gene function revised as a result of E. coli genome reannotation by Serres et al. [Serres01 ].
10/20/97 Gene b3861 from Blattner lab Genbank (v. M52) entry merged into EcoCyc gene EG11832; confirmed by SwissProt match.


References

Baba06: Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, Baba M, Datsenko KA, Tomita M, Wanner BL, Mori H (2006). "Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection." Mol Syst Biol 2;2006.0008. PMID: 16738554

Belin94: Belin P, Boquet PL (1994). "The Escherichia coli dsbA gene is partly transcribed from the promoter of a weakly expressed upstream gene." Microbiology 140 ( Pt 12);3337-48. PMID: 7881552

Joyce06: Joyce AR, Reed JL, White A, Edwards R, Osterman A, Baba T, Mori H, Lesely SA, Palsson BO, Agarwalla S (2006). "Experimental and computational assessment of conditionally essential genes in Escherichia coli." J Bacteriol 188(23);8259-71. PMID: 17012394

Plunkett93: Plunkett G, Burland V, Daniels DL, Blattner FR (1993). "Analysis of the Escherichia coli genome. III. DNA sequence of the region from 87.2 to 89.2 minutes." Nucleic Acids Res 1993;21(15);3391-8. PMID: 8346018

Riley06: Riley M, Abe T, Arnaud MB, Berlyn MK, Blattner FR, Chaudhuri RR, Glasner JD, Horiuchi T, Keseler IM, Kosuge T, Mori H, Perna NT, Plunkett G, Rudd KE, Serres MH, Thomas GH, Thomson NR, Wishart D, Wanner BL (2006). "Escherichia coli K-12: a cooperatively developed annotation snapshot--2005." Nucleic Acids Res 34(1);1-9. PMID: 16397293

Serres01: Serres MH, Gopal S, Nahum LA, Liang P, Gaasterland T, Riley M (2001). "A functional update of the Escherichia coli K-12 genome." Genome Biol 2(9);RESEARCH0035. PMID: 11574054

UniProt09: UniProt Consortium (2009). "UniProt version 15.8 released on 2009-10-01 00:00:00." Database.

UniProt10: UniProt Consortium (2010). "UniProt version 2010-11 released on 2010-11-02 00:00:00." Database.

UniProt10a: UniProt Consortium (2010). "UniProt version 2010-07 released on 2010-06-15 00:00:00." Database.


Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 18.5 on Fri Dec 19, 2014, BIOCYC14B.