Escherichia coli K-12 substr. MG1655 Polypeptide: conserved protein

Gene: ybdD Accession Numbers: G0-10438 (EcoCyc), b4512, ECK0592

Regulation Summary Diagram: ?

Regulation summary diagram for ybdD

No information about this protein was found by a literature search conducted on January 26, 2006.

Map Position: [631,405 -> 631,602] (13.61 centisomes, 49°)
Length: 198 bp / 65 aa

Molecular Weight of Polypeptide: 7.467 kD (from nucleotide sequence)

Unification Links: ASAP:ABE-0285033 , EchoBASE:EB1098 , EcoGene:EG11107 , EcoliWiki:b4512 , PortEco:ybdD , Pride:P0AAS9 , Protein Model Portal:P0AAS9 , RefSeq:YP_588442 , RegulonDB:G0-10438 , String:511145.b4512 , UniProt:P0AAS9

Relationship Links: InterPro:IN-FAMILY:IPR007423 , Pfam:IN-FAMILY:PF04328

Gene Class: ORFs Conserved-ORFs

Essentiality data for ybdD knockouts: ?

Growth Medium Growth? T (°C) O2 pH Osm/L Growth Observations
LB Lennox Yes 37 Aerobic 7   Yes [Baba06, Comment 1]
M9 medium with 1% glycerol Yes 37 Aerobic 7.2 0.35 Yes [Joyce06, Comment 2]
MOPS medium with 0.4% glucose Yes 37 Aerobic 7.2 0.22 Yes [Baba06, Comment 1]

Gene Local Context (not to scale): ?

Gene local context diagram

Transcription Unit:

Transcription-unit diagram


Peter D. Karp on Thu Jan 19, 2006:
Existence of this gene was inferred by analysis performed in the 2005 E. coli annotation update [Riley06 ].


Baba06: Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, Baba M, Datsenko KA, Tomita M, Wanner BL, Mori H (2006). "Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection." Mol Syst Biol 2;2006.0008. PMID: 16738554

Joyce06: Joyce AR, Reed JL, White A, Edwards R, Osterman A, Baba T, Mori H, Lesely SA, Palsson BO, Agarwalla S (2006). "Experimental and computational assessment of conditionally essential genes in Escherichia coli." J Bacteriol 188(23);8259-71. PMID: 17012394

Riley06: Riley M, Abe T, Arnaud MB, Berlyn MK, Blattner FR, Chaudhuri RR, Glasner JD, Horiuchi T, Keseler IM, Kosuge T, Mori H, Perna NT, Plunkett G, Rudd KE, Serres MH, Thomas GH, Thomson NR, Wishart D, Wanner BL (2006). "Escherichia coli K-12: a cooperatively developed annotation snapshot--2005." Nucleic Acids Res 34(1);1-9. PMID: 16397293

Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
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