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Escherichia coli K-12 substr. MG1655 Polypeptide: small predicted membrane protein



Gene: ythA Accession Numbers: G0-10616 (EcoCyc), b4655, ECK4434

Regulation Summary Diagram: ?

Regulation summary diagram for ythA

Summary:
The YthA open reading frame was predicted based on the presence of a ribosome binding site in an intergenic region. YthA contains a predicted transmembrane segment. YthA is highly expressed during both exponential growth and stationary phase [Hemm08].

Locations: inner membrane

Map Position: [4,504,471 -> 4,504,596] (97.09 centisomes, 350°)
Length: 126 bp / 41 aa

Molecular Weight of Polypeptide: 4.779 kD (from nucleotide sequence)

Unification Links: EcoGene:EG14464 , EcoliWiki:b4655 , PortEco:ythA , RegulonDB:G0-10616 , String:511145.b4655 , UniProt:A8DYQ1

GO Terms:

Cellular Component: GO:0005886 - plasma membrane Inferred by computational analysis [UniProtGOA11, UniProtGOA11a]
GO:0016020 - membrane Inferred by computational analysis [UniProtGOA11a]
GO:0016021 - integral component of membrane Inferred by computational analysis [UniProtGOA11a]

Gene Class: ORFs

Credits:
Last-Curated ? 21-Apr-2009 by Keseler I , SRI International


Gene Local Context (not to scale): ?

Gene local context diagram

The database does not contain any information about transcription units for this gene.


References

Hemm08: Hemm MR, Paul BJ, Schneider TD, Storz G, Rudd KE (2008). "Small membrane proteins found by comparative genomics and ribosome binding site models." Mol Microbiol 70(6);1487-501. PMID: 19121005

UniProtGOA11: UniProt-GOA (2011). "Gene Ontology annotation based on the manual assignment of UniProtKB Subcellular Location terms in UniProtKB/Swiss-Prot entries."

UniProtGOA11a: UniProt-GOA (2011). "Gene Ontology annotation based on manual assignment of UniProtKB keywords in UniProtKB/Swiss-Prot entries."


Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 19.0 on Sat Jul 4, 2015, biocyc11.