Escherichia coli K-12 substr. MG1655 RNA: Tpke11 small RNA

Gene: tpke11 Accession Number: G0-8893 (EcoCyc)

Superclasses: Misc-RNAs

Regulation Summary Diagram: ?

Regulation summary diagram for tpke11

Tpke11 is a small RNA of approximately 370 nt in length [Rivas01]. The gene position corresponds to that of the predicted site of the tpke11 gene, which would encode an RNA of 88 nt [Rivas01].

Review: [Hershberg03]

Map Position: [14,080 -> 14,168] (0.3 centisomes, 1°)
Length: 89 bp

Unification Links: PortEco:tpke11 , RegulonDB:G0-8893

MultiFun Terms: information transfer RNA related

Gene Local Context (not to scale): ?

Gene local context diagram

Transcription Units:

Transcription-unit diagram

Transcription-unit diagram

Transcription-unit diagram

Transcription-unit diagram



Hershberg03: Hershberg R, Altuvia S, Margalit H (2003). "A survey of small RNA-encoding genes in Escherichia coli." Nucleic Acids Res 31(7);1813-20. PMID: 12654996

Rivas01: Rivas E, Klein RJ, Jones TA, Eddy SR (2001). "Computational identification of noncoding RNAs in E. coli by comparative genomics." Curr Biol 11(17);1369-73. PMID: 11553332

Other References Related to Gene Regulation

Bardwell86: Bardwell JC, Tilly K, Craig E, King J, Zylicz M, Georgopoulos C (1986). "The nucleotide sequence of the Escherichia coli K12 dnaJ+ gene. A gene that encodes a heat shock protein." J Biol Chem 1986;261(4);1782-5. PMID: 3003085

Cowing85: Cowing DW, Bardwell JC, Craig EA, Woolford C, Hendrix RW, Gross CA (1985). "Consensus sequence for Escherichia coli heat shock gene promoters." Proc Natl Acad Sci U S A 82(9);2679-83. PMID: 3887408

Nonaka06: Nonaka G, Blankschien M, Herman C, Gross CA, Rhodius VA (2006). "Regulon and promoter analysis of the E. coli heat-shock factor, sigma32, reveals a multifaceted cellular response to heat stress." Genes Dev 20(13);1776-89. PMID: 16818608

Thomas96: Thomas JG, Baneyx F (1996). "Protein folding in the cytoplasm of Escherichia coli: requirements for the DnaK-DnaJ-GrpE and GroEL-GroES molecular chaperone machines." Mol Microbiol 1996;21(6);1185-96. PMID: 8898387

Wade06: Wade JT, Roa DC, Grainger DC, Hurd D, Busby SJ, Struhl K, Nudler E (2006). "Extensive functional overlap between sigma factors in Escherichia coli." Nat Struct Mol Biol 13(9);806-14. PMID: 16892065

Wagner09: Wagner MA, Zahrl D, Rieser G, Koraimann G (2009). "Growth phase- and cell division-dependent activation and inactivation of the {sigma}32 regulon in Escherichia coli." J Bacteriol 191(5);1695-702. PMID: 19114495

Zahrl06: Zahrl D, Wagner M, Bischof K, Koraimann G (2006). "Expression and assembly of a functional type IV secretion system elicit extracytoplasmic and cytoplasmic stress responses in Escherichia coli." J Bacteriol 188(18);6611-21. PMID: 16952953

Zhou88: Zhou YN, Kusukawa N, Erickson JW, Gross CA, Yura T (1988). "Isolation and characterization of Escherichia coli mutants that lack the heat shock sigma factor sigma 32." J Bacteriol 170(8);3640-9. PMID: 2900239

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Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 19.0 on Thu Oct 8, 2015, biocyc13.