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Metabolic Modeling Tutorial
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Escherichia coli K-12 substr. MG1655 Polypeptide: Qin prophage; predicted protein



Gene: ydfR Accession Numbers: G6828 (EcoCyc), b1555, ECK1549

Regulation Summary Diagram: ?

Summary:
No information about this protein was found by a literature search conducted on September 5, 2006.

Citations: [ParadisBleau14]

Locations: cytosol

Map Position: [1,638,078 <- 1,638,389] (35.31 centisomes)
Length: 312 bp / 103 aa

Molecular Weight of Polypeptide: 12.091 kD (from nucleotide sequence)

Unification Links: ASAP:ABE-0005192 , DIP:DIP-11703N , EchoBASE:EB3591 , EcoGene:EG13830 , EcoliWiki:b1555 , OU-Microarray:b1555 , PortEco:ydfR , Protein Model Portal:P76160 , RefSeq:NP_416073 , RegulonDB:G6828 , String:511145.b1555 , UniProt:P76160

Relationship Links: InterPro:IN-FAMILY:IPR009759 , Pfam:IN-FAMILY:PF07041

GO Terms:

Cellular Component: GO:0005829 - cytosol Inferred by computational analysis [DiazMejia09]

MultiFun Terms: extrachromosomal prophage genes and phage related functions

Essentiality data for ydfR knockouts: ?

Growth Medium Growth? T (°C) O2 pH Osm/L Growth Observations
LB Lennox Yes 37 Aerobic 7   Yes [Baba06, Comment 1]
M9 medium with 1% glycerol Yes 37 Aerobic 7.2 0.35 Yes [Joyce06, Comment 2]
MOPS medium with 0.4% glucose Yes 37 Aerobic 7.2 0.22 Yes [Baba06, Comment 1]

Credits:
Last-Curated ? 05-Sep-2006 by Keseler I , SRI International


Gene Local Context (not to scale): ?

Transcription Unit:

Notes:

History:
Markus Krummenacker on Tue Oct 14, 1997:
Gene object created from Blattner lab Genbank (v. M52) entry.


References

Baba06: Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, Baba M, Datsenko KA, Tomita M, Wanner BL, Mori H (2006). "Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection." Mol Syst Biol 2;2006.0008. PMID: 16738554

DiazMejia09: Diaz-Mejia JJ, Babu M, Emili A (2009). "Computational and experimental approaches to chart the Escherichia coli cell-envelope-associated proteome and interactome." FEMS Microbiol Rev 33(1);66-97. PMID: 19054114

Joyce06: Joyce AR, Reed JL, White A, Edwards R, Osterman A, Baba T, Mori H, Lesely SA, Palsson BO, Agarwalla S (2006). "Experimental and computational assessment of conditionally essential genes in Escherichia coli." J Bacteriol 188(23);8259-71. PMID: 17012394

ParadisBleau14: Paradis-Bleau C, Kritikos G, Orlova K, Typas A, Bernhardt TG (2014). "A genome-wide screen for bacterial envelope biogenesis mutants identifies a novel factor involved in cell wall precursor metabolism." PLoS Genet 10(1);e1004056. PMID: 24391520


Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 18.5 on Wed Dec 17, 2014, biocyc12.