Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
twitter

Escherichia coli K-12 substr. MG1655 Polypeptide: regulator of length of O-antigen component of lipopolysaccharide chains



Gene: wzzB Accession Numbers: G7090 (EcoCyc), b2027, ECK2022

Synonyms: wzz, rol, cld

Regulation Summary Diagram: ?

Summary:
In E. coli strains O8 and O9, the orthologous Wzz protein was shown to control the length of the O-antigen component of lipopolysaccharide [Franco96, Amor97]. Regulation of O-antigen chain length is required for virulence of Salmonella typhimurium [Murray03]. E. coli K12 does not produce O-antigen.

WzzB appears to be present as a dimer in the membrane [Stenberg05].

rol: "regulator of O length" [Batchelor91]

cld: "chain length determinant" [Bastin93]

Locations: inner membrane

Map Position: [2,095,345 <- 2,096,325] (45.16 centisomes)
Length: 981 bp / 326 aa

Molecular Weight of Polypeptide: 36.455 kD (from nucleotide sequence)

Unification Links: ASAP:ABE-0006731 , EchoBASE:EB3182 , EcoGene:EG13406 , EcoliWiki:b2027 , OU-Microarray:b2027 , PortEco:cld , PR:PRO_000024226 , Protein Model Portal:P76372 , RefSeq:NP_416531 , RegulonDB:G7090 , SMR:P76372 , String:511145.b2027 , UniProt:P76372

Relationship Links: InterPro:IN-FAMILY:IPR003856 , Pfam:IN-FAMILY:PF02706

In Paralogous Gene Group: 158 (3 members)

GO Terms:

Biological Process: GO:0009103 - lipopolysaccharide biosynthetic process Inferred by computational analysis [UniProtGOA12, UniProtGOA11, GOA01]
Cellular Component: GO:0005886 - plasma membrane Inferred by computational analysis [UniProtGOA11a, UniProtGOA11, Stenberg05]
GO:0016020 - membrane Inferred by computational analysis [UniProtGOA11, GOA01]
GO:0016021 - integral component of membrane Inferred by computational analysis [UniProtGOA11]

MultiFun Terms: cell structure surface antigens (ECA, O antigen of LPS)
metabolism biosynthesis of macromolecules (cellular constituents) lipopolysaccharide O antigen
regulation type of regulation posttranscriptional covalent modification, demodification, maturation

Essentiality data for wzzB knockouts: ?

Growth Medium Growth? T (°C) O2 pH Osm/L Growth Observations
LB enriched Yes 37 Aerobic 6.95   Yes [Gerdes03, Comment 1]
LB Lennox Yes 37 Aerobic 7   Yes [Baba06, Comment 2]
M9 medium with 1% glycerol Yes 37 Aerobic 7.2 0.35 Yes [Joyce06, Comment 3]
MOPS medium with 0.4% glucose Yes 37 Aerobic 7.2 0.22 Yes [Baba06, Comment 2]
Yes [Feist07, Comment 4]

Sequence Features

Feature Class Location Citations Comment
Transmembrane-Region 32 -> 52
[UniProt10a]
UniProt: Helical;; Non-Experimental Qualifier: potential;
Transmembrane-Region 296 -> 316
[UniProt10a]
UniProt: Helical;; Non-Experimental Qualifier: potential;


Gene Local Context (not to scale): ?

Transcription Unit:

Notes:

History:
Markus Krummenacker on Tue Oct 14, 1997:
Gene object created from Blattner lab Genbank (v. M52) entry.


References

Amor97: Amor PA, Whitfield C (1997). "Molecular and functional analysis of genes required for expression of group IB K antigens in Escherichia coli: characterization of the his-region containing gene clusters for multiple cell-surface polysaccharides." Mol Microbiol 26(1);145-61. PMID: 9383197

Baba06: Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, Baba M, Datsenko KA, Tomita M, Wanner BL, Mori H (2006). "Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection." Mol Syst Biol 2;2006.0008. PMID: 16738554

Bastin93: Bastin DA, Stevenson G, Brown PK, Haase A, Reeves PR (1993). "Repeat unit polysaccharides of bacteria: a model for polymerization resembling that of ribosomes and fatty acid synthetase, with a novel mechanism for determining chain length." Mol Microbiol 7(5);725-34. PMID: 7682279

Batchelor91: Batchelor RA, Haraguchi GE, Hull RA, Hull SI (1991). "Regulation by a novel protein of the bimodal distribution of lipopolysaccharide in the outer membrane of Escherichia coli." J Bacteriol 173(18);5699-704. PMID: 1715860

Feist07: Feist AM, Henry CS, Reed JL, Krummenacker M, Joyce AR, Karp PD, Broadbelt LJ, Hatzimanikatis V, Palsson BO (2007). "A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information." Mol Syst Biol 3;121. PMID: 17593909

Franco96: Franco AV, Liu D, Reeves PR (1996). "A Wzz (Cld) protein determines the chain length of K lipopolysaccharide in Escherichia coli O8 and O9 strains." J Bacteriol 178(7);1903-7. PMID: 8606163

Gerdes03: Gerdes SY, Scholle MD, Campbell JW, Balazsi G, Ravasz E, Daugherty MD, Somera AL, Kyrpides NC, Anderson I, Gelfand MS, Bhattacharya A, Kapatral V, D'Souza M, Baev MV, Grechkin Y, Mseeh F, Fonstein MY, Overbeek R, Barabasi AL, Oltvai ZN, Osterman AL (2003). "Experimental determination and system level analysis of essential genes in Escherichia coli MG1655." J Bacteriol 185(19);5673-84. PMID: 13129938

GOA01: GOA, DDB, FB, MGI, ZFIN (2001). "Gene Ontology annotation through association of InterPro records with GO terms."

Joyce06: Joyce AR, Reed JL, White A, Edwards R, Osterman A, Baba T, Mori H, Lesely SA, Palsson BO, Agarwalla S (2006). "Experimental and computational assessment of conditionally essential genes in Escherichia coli." J Bacteriol 188(23);8259-71. PMID: 17012394

Murray03: Murray GL, Attridge SR, Morona R (2003). "Regulation of Salmonella typhimurium lipopolysaccharide O antigen chain length is required for virulence; identification of FepE as a second Wzz." Mol Microbiol 47(5);1395-406. PMID: 12603743

Stenberg05: Stenberg F, Chovanec P, Maslen SL, Robinson CV, Ilag LL, von Heijne G, Daley DO (2005). "Protein complexes of the Escherichia coli cell envelope." J Biol Chem 280(41);34409-19. PMID: 16079137

UniProt10a: UniProt Consortium (2010). "UniProt version 2010-07 released on 2010-06-15 00:00:00." Database.

UniProtGOA11: UniProt-GOA (2011). "Gene Ontology annotation based on manual assignment of UniProtKB keywords in UniProtKB/Swiss-Prot entries."

UniProtGOA11a: UniProt-GOA (2011). "Gene Ontology annotation based on the manual assignment of UniProtKB Subcellular Location terms in UniProtKB/Swiss-Prot entries."

UniProtGOA12: UniProt-GOA (2012). "Gene Ontology annotation based on UniPathway vocabulary mapping."


Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 18.5 on Thu Nov 27, 2014, BIOCYC13A.