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Escherichia coli K-12 substr. MG1655 Enzyme: acyl carrier protein phosphodiesterase



Gene: acpH Accession Numbers: EG11095 (EcoCyc), b0404, ECK0398

Synonyms: yajB

Regulation Summary Diagram: ?

Summary:
Acyl carrier protein (ACP) phosphodiesterase is responsible for the cleavage of 4'-phosphopantetheine (4'-PP) from a holo-[acyl-carrier protein] by hydrolysis of the phosphodiester linkage between 4'-PP and the hydroxyl group of a serine residue of the ACP apoprotein [Thomas05]. This reaction requires divalent cations [Vagelos67].

Monomeric and trimeric forms of the purified protein are present in solution [Thomas05].

AcpH is responsible for turnover of the ACP prosthetic group in vivo, but is not essential for growth. The physiological role of AcpH is unknown [Thomas05].

Locations: cytosol

Map Position: [423,561 <- 424,142] (9.13 centisomes)
Length: 582 bp / 193 aa

Molecular Weight of Polypeptide: 22.961 kD (from nucleotide sequence)

Unification Links: ASAP:ABE-0001404 , EchoBASE:EB1087 , EcoGene:EG11095 , EcoliWiki:b0404 , OU-Microarray:b0404 , PortEco:acpH , PR:PRO_000022044 , Protein Model Portal:P21515 , RefSeq:NP_414938 , RegulonDB:EG11095 , String:511145.b0404 , UniProt:P21515

Relationship Links: InterPro:IN-FAMILY:IPR007431 , InterPro:IN-FAMILY:IPR023491 , Pfam:IN-FAMILY:PF04336

Gene-Reaction Schematic: ?

GO Terms:

Biological Process: GO:0006633 - fatty acid biosynthetic process Inferred from experiment Inferred by computational analysis [UniProtGOA11, GOA01, Thomas05]
GO:0006629 - lipid metabolic process Inferred by computational analysis [UniProtGOA11]
GO:0006631 - fatty acid metabolic process Inferred by computational analysis [UniProtGOA11]
Molecular Function: GO:0008770 - [acyl-carrier-protein] phosphodiesterase activity Inferred from experiment Inferred by computational analysis [GOA01a, GOA01, Vagelos67]
GO:0016787 - hydrolase activity Inferred by computational analysis [UniProtGOA11]
Cellular Component: GO:0005829 - cytosol Inferred by computational analysis [DiazMejia09]

MultiFun Terms: metabolism biosynthesis of macromolecules (cellular constituents) large molecule carriers acyl carrier protein

Essentiality data for acpH knockouts: ?

Growth Medium Growth? T (°C) O2 pH Osm/L Growth Observations
LB enriched Yes 37 Aerobic 6.95   Yes [Gerdes03, Comment 1]
LB Lennox Yes 37 Aerobic 7   Yes [Baba06, Comment 2]
M9 medium with 1% glycerol Yes 37 Aerobic 7.2 0.35 Yes [Joyce06, Comment 3]
MOPS medium with 0.4% glucose Yes 37 Aerobic 7.2 0.22 Yes [Baba06, Comment 2]
Yes [Feist07, Comment 4]

Credits:
Last-Curated ? 01-Sep-2006 by Keseler I , SRI International


Enzymatic reaction of: acyl carrier protein phosphodiesterase

EC Number: 3.1.4.14

a holo-[acyl-carrier protein] + H2O <=> an apo-[acp] + 4'-phosphopantetheine

The reaction direction shown, that is, A + B ↔ C + D versus C + D ↔ A + B, is in accordance with the direction of enzyme catalysis.

The reaction is physiologically favored in the direction shown.

In Pathways: acyl carrier protein metabolism I

Cofactors or Prosthetic Groups: Zn2+ [Vagelos67], Fe2+ [Vagelos67], Co2+ [Vagelos67], Mg2+ [Vagelos67], Mn2+ [Vagelos67]

T(opt): 42 °C [BRENDA14, Fischl90]

pH(opt): 8.5 [BRENDA14, Vagelos67]


Gene Local Context (not to scale): ?

Transcription Unit:

Notes:

History:
10/20/97 Gene b0404 from Blattner lab Genbank (v. M52) entry merged into EcoCyc gene EG11095.


References

Baba06: Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, Baba M, Datsenko KA, Tomita M, Wanner BL, Mori H (2006). "Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection." Mol Syst Biol 2;2006.0008. PMID: 16738554

BRENDA14: BRENDA team (2014). "Imported from BRENDA version existing on Aug 2014." http://www.brenda-enzymes.org.

DiazMejia09: Diaz-Mejia JJ, Babu M, Emili A (2009). "Computational and experimental approaches to chart the Escherichia coli cell-envelope-associated proteome and interactome." FEMS Microbiol Rev 33(1);66-97. PMID: 19054114

Feist07: Feist AM, Henry CS, Reed JL, Krummenacker M, Joyce AR, Karp PD, Broadbelt LJ, Hatzimanikatis V, Palsson BO (2007). "A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information." Mol Syst Biol 3;121. PMID: 17593909

Fischl90: Fischl AS, Kennedy EP (1990). "Isolation and properties of acyl carrier protein phosphodiesterase of Escherichia coli." J Bacteriol 172(9);5445-9. PMID: 2168383

Gerdes03: Gerdes SY, Scholle MD, Campbell JW, Balazsi G, Ravasz E, Daugherty MD, Somera AL, Kyrpides NC, Anderson I, Gelfand MS, Bhattacharya A, Kapatral V, D'Souza M, Baev MV, Grechkin Y, Mseeh F, Fonstein MY, Overbeek R, Barabasi AL, Oltvai ZN, Osterman AL (2003). "Experimental determination and system level analysis of essential genes in Escherichia coli MG1655." J Bacteriol 185(19);5673-84. PMID: 13129938

GOA01: GOA, DDB, FB, MGI, ZFIN (2001). "Gene Ontology annotation through association of InterPro records with GO terms."

GOA01a: GOA, MGI (2001). "Gene Ontology annotation based on Enzyme Commission mapping." Genomics 74;121-128.

Joyce06: Joyce AR, Reed JL, White A, Edwards R, Osterman A, Baba T, Mori H, Lesely SA, Palsson BO, Agarwalla S (2006). "Experimental and computational assessment of conditionally essential genes in Escherichia coli." J Bacteriol 188(23);8259-71. PMID: 17012394

Thomas05: Thomas J, Cronan JE (2005). "The enigmatic acyl carrier protein phosphodiesterase of Escherichia coli: genetic and enzymological characterization." J Biol Chem 280(41);34675-83. PMID: 16107329

UniProtGOA11: UniProt-GOA (2011). "Gene Ontology annotation based on manual assignment of UniProtKB keywords in UniProtKB/Swiss-Prot entries."

Vagelos67: Vagelos PR, Larrabes AR (1967). "Acyl carrier protein. IX. Acyl carrier protein hydrolase." J Biol Chem 242(8);1776-81. PMID: 4290442


Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 18.5 on Thu Dec 18, 2014, biocyc12.