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Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
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Escherichia coli K-12 substr. MG1655 Reaction: 2.1.1.178

Superclasses: Reactions Classified By Conversion Type Simple Reactions Chemical Reactions
Reactions Classified By Substrate Macromolecule Reactions Polynucleotide-Reactions RNA-Reactions

EC Number: 2.1.1.178

Enzymes and Genes:
16S rRNA m5C1407 methyltransferase Inferred from experiment : rsmF

The reaction direction shown, that is, A + B ↔ C + D versus C + D ↔ A + B, is in accordance with the Enzyme Commission system.

Most BioCyc compounds have been protonated to a reference pH value of 7.3, and some reactions have been computationally balanced for hydrogen by adding free protons. Please see the PGDB Concepts Guide for more information.

Mass balance status: Balanced.

Enzyme Commission Primary Name: 16S rRNA (cytosine1407-C5)-methyltransferase

Enzyme Commission Synonyms: RNA m5C methyltransferase YebU, RsmF, YebU

Enzyme Commission Summary:
The enzyme specifically methylates cytosine1407 at C5 in 16S rRNA.

Citations: [Andersen06, Hallberg06]

Gene-Reaction Schematic: ?

Relationship Links: BRENDA:EC:2.1.1.178 , ENZYME:EC:2.1.1.178 , IUBMB-ExplorEnz:EC:2.1.1.178

Credits:
Created 11-Aug-2010 by Kothari A , SRI International


References

Andersen06: Andersen NM, Douthwaite S (2006). "YebU is a m(5)C Methyltransferase Specific for 16 S rRNA Nucleotide 1407." J Mol Biol 59(3):777-86. PMID: 16678201

Hallberg06: Hallberg BM, Ericsson UB, Johnson KA, Andersen NM, Douthwaite S, Nordlund P, Beuscher AE, Erlandsen H (2006). "The Structure of the RNA m(5)C Methyltransferase YebU from Escherichia coli Reveals a C-terminal RNA-recruiting PUA Domain." J Mol Biol 360(4):774-87. PMID: 16793063


Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 18.5 on Mon Dec 22, 2014, BIOCYC14B.