Escherichia coli K-12 substr. MG1655 Polypeptide: Rac prophage; predicted DNA replication protein

Gene: ydaV Accession Numbers: G6684 (EcoCyc), b1360, ECK1358

Regulation Summary Diagram: ?

Regulation summary diagram for ydaV

ydaV was identified in a screen for genes affecting Fe-S cluster biogenesis and/or iron homeostasis [Hidese14].

Locations: cytosol

Map Position: [1,420,007 -> 1,420,753] (30.61 centisomes, 110°)
Length: 747 bp / 248 aa

Molecular Weight of Polypeptide: 28.128 kD (from nucleotide sequence)

Unification Links: ASAP:ABE-0004560 , DIP:DIP-48163N , EchoBASE:EB3147 , EcoGene:EG13364 , EcoliWiki:b1360 , ModBase:P77546 , OU-Microarray:b1360 , PortEco:ydaV , Protein Model Portal:P77546 , RefSeq:NP_415878 , RegulonDB:G6684 , SMR:P77546 , String:511145.b1360 , UniProt:P77546

Relationship Links: InterPro:IN-FAMILY:IPR002611 , InterPro:IN-FAMILY:IPR003593 , InterPro:IN-FAMILY:IPR027417 , InterPro:IN-FAMILY:IPR028350 , Pfam:IN-FAMILY:PF01695 , Smart:IN-FAMILY:SM00382

In Paralogous Gene Group: 281 (4 members)

GO Terms:

Biological Process: GO:0006260 - DNA replication Inferred by computational analysis [Gaudet10]
Molecular Function: GO:0005524 - ATP binding Inferred by computational analysis [GOA01a]
GO:0043565 - sequence-specific DNA binding Inferred by computational analysis [Gaudet10]
Cellular Component: GO:0005829 - cytosol Inferred by computational analysis [DiazMejia09]

MultiFun Terms: extrachromosomal prophage genes and phage related functions

Essentiality data for ydaV knockouts: ?

Growth Medium Growth? T (°C) O2 pH Osm/L Growth Observations
LB enriched Yes 37 Aerobic 6.95   Yes [Gerdes03, Comment 1]
LB Lennox Yes 37 Aerobic 7   Yes [Baba06, Comment 2]
M9 medium with 1% glycerol Yes 37 Aerobic 7.2 0.35 Yes [Joyce06, Comment 3]
MOPS medium with 0.4% glucose Yes 37 Aerobic 7.2 0.22 Yes [Baba06, Comment 2]

Last-Curated ? 30-Jan-2014 by Keseler I , SRI International

Gene Local Context (not to scale): ?

Gene local context diagram

Transcription Unit:

Transcription-unit diagram


Markus Krummenacker on Tue Oct 14, 1997:
Gene object created from Blattner lab Genbank (v. M52) entry.


Baba06: Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, Baba M, Datsenko KA, Tomita M, Wanner BL, Mori H (2006). "Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection." Mol Syst Biol 2;2006.0008. PMID: 16738554

DiazMejia09: Diaz-Mejia JJ, Babu M, Emili A (2009). "Computational and experimental approaches to chart the Escherichia coli cell-envelope-associated proteome and interactome." FEMS Microbiol Rev 33(1);66-97. PMID: 19054114

Gaudet10: Gaudet P, Livstone M, Thomas P (2010). "Annotation inferences using phylogenetic trees." PMID: 19578431

Gerdes03: Gerdes SY, Scholle MD, Campbell JW, Balazsi G, Ravasz E, Daugherty MD, Somera AL, Kyrpides NC, Anderson I, Gelfand MS, Bhattacharya A, Kapatral V, D'Souza M, Baev MV, Grechkin Y, Mseeh F, Fonstein MY, Overbeek R, Barabasi AL, Oltvai ZN, Osterman AL (2003). "Experimental determination and system level analysis of essential genes in Escherichia coli MG1655." J Bacteriol 185(19);5673-84. PMID: 13129938

GOA01a: GOA, DDB, FB, MGI, ZFIN (2001). "Gene Ontology annotation through association of InterPro records with GO terms."

Hidese14: Hidese R, Mihara H, Kurihara T, Esaki N (2014). "Global identification of genes affecting iron-sulfur cluster biogenesis and iron homeostasis." J Bacteriol. PMID: 24415728

Joyce06: Joyce AR, Reed JL, White A, Edwards R, Osterman A, Baba T, Mori H, Lesely SA, Palsson BO, Agarwalla S (2006). "Experimental and computational assessment of conditionally essential genes in Escherichia coli." J Bacteriol 188(23);8259-71. PMID: 17012394

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Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 19.0 on Sun Oct 4, 2015, biocyc13.