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Escherichia coli K-12 substr. MG1655 Polypeptide: predicted oxidoreductase, Zn-dependent and NAD(P)-binding



Gene: ydjL Accession Numbers: G6963 (EcoCyc), b1776, ECK1774

Regulation Summary Diagram: ?

Regulation summary diagram for ydjL

Summary:
No information about this protein was found by a literature search conducted on September 3, 2013.

Locations: cytosol

Map Position: [1,858,280 <- 1,859,356] (40.05 centisomes, 144°)
Length: 1077 bp / 358 aa

Molecular Weight of Polypeptide: 38.732 kD (from nucleotide sequence)

Unification Links: ASAP:ABE-0005912 , DIP:DIP-11774N , EchoBASE:EB3261 , EcoGene:EG13488 , EcoliWiki:b1776 , ModBase:P77539 , OU-Microarray:b1776 , PortEco:ydjL , Protein Model Portal:P77539 , RefSeq:NP_416290 , RegulonDB:G6963 , SMR:P77539 , String:511145.b1776 , UniProt:P77539

Relationship Links: InterPro:IN-FAMILY:IPR002085 , InterPro:IN-FAMILY:IPR002328 , InterPro:IN-FAMILY:IPR011032 , InterPro:IN-FAMILY:IPR013149 , InterPro:IN-FAMILY:IPR013154 , InterPro:IN-FAMILY:IPR016040 , Panther:IN-FAMILY:PTHR11695 , Pfam:IN-FAMILY:PF00107 , Pfam:IN-FAMILY:PF08240 , Prosite:IN-FAMILY:PS00059

In Paralogous Gene Group: 103 (13 members)

GO Terms:

Biological Process: GO:0055114 - oxidation-reduction process Inferred by computational analysis [UniProtGOA11a, GOA01a]
Molecular Function: GO:0008270 - zinc ion binding Inferred by computational analysis [GOA01a]
GO:0016491 - oxidoreductase activity Inferred by computational analysis [UniProtGOA11a, GOA01a]
GO:0046872 - metal ion binding Inferred by computational analysis [UniProtGOA11a]
Cellular Component: GO:0005829 - cytosol Inferred by computational analysis [DiazMejia09]

Gene Class: ORFs

Essentiality data for ydjL knockouts: ?

Growth Medium Growth? T (°C) O2 pH Osm/L Growth Observations
LB Lennox Yes 37 Aerobic 7   Yes [Baba06, Comment 1]
M9 medium with 1% glycerol Yes 37 Aerobic 7.2 0.35 Yes [Joyce06, Comment 2]
MOPS medium with 0.4% glucose Yes 37 Aerobic 7.2 0.22 Yes [Baba06, Comment 1]

Credits:
Last-Curated ? 03-Sep-2013 by Keseler I , SRI International


Sequence Features

Protein sequence of predicted oxidoreductase, Zn-dependent and NAD(P)-binding with features indicated

Feature Class Location Citations Comment
Metal-Binding-Site 39
[UniProt15]
UniProt: Zinc 1; catalytic.
Metal-Binding-Site 61
[UniProt10a]
UniProt: Zinc 1; catalytic; Non-Experimental Qualifier: by similarity;
Metal-Binding-Site 92
[UniProt10a]
UniProt: Zinc 2; Non-Experimental Qualifier: by similarity;
Metal-Binding-Site 95
[UniProt10a]
UniProt: Zinc 2; Non-Experimental Qualifier: by similarity;
Metal-Binding-Site 98
[UniProt10a]
UniProt: Zinc 2; Non-Experimental Qualifier: by similarity;
Metal-Binding-Site 106
[UniProt10a]
UniProt: Zinc 2; Non-Experimental Qualifier: by similarity;
Metal-Binding-Site 157
[UniProt10a]
UniProt: Zinc 1; catalytic; Non-Experimental Qualifier: by similarity;


Gene Local Context (not to scale): ?

Gene local context diagram

Transcription Unit:

Transcription-unit diagram

Notes:

History:
Markus Krummenacker on Tue Oct 14, 1997:
Gene object created from Blattner lab Genbank (v. M52) entry.


References

Baba06: Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, Baba M, Datsenko KA, Tomita M, Wanner BL, Mori H (2006). "Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection." Mol Syst Biol 2;2006.0008. PMID: 16738554

DiazMejia09: Diaz-Mejia JJ, Babu M, Emili A (2009). "Computational and experimental approaches to chart the Escherichia coli cell-envelope-associated proteome and interactome." FEMS Microbiol Rev 33(1);66-97. PMID: 19054114

GOA01a: GOA, DDB, FB, MGI, ZFIN (2001). "Gene Ontology annotation through association of InterPro records with GO terms."

Joyce06: Joyce AR, Reed JL, White A, Edwards R, Osterman A, Baba T, Mori H, Lesely SA, Palsson BO, Agarwalla S (2006). "Experimental and computational assessment of conditionally essential genes in Escherichia coli." J Bacteriol 188(23);8259-71. PMID: 17012394

UniProt10a: UniProt Consortium (2010). "UniProt version 2010-07 released on 2010-06-15 00:00:00." Database.

UniProt15: UniProt Consortium (2015). "UniProt version 2015-01 released on 2015-01-16 00:00:00." Database.

UniProtGOA11a: UniProt-GOA (2011). "Gene Ontology annotation based on manual assignment of UniProtKB keywords in UniProtKB/Swiss-Prot entries."


Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 19.0 on Sat Mar 28, 2015, BIOCYC14B.