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Escherichia coli K-12 substr. MG1655 RNA: IsrB small RNA



Gene: isrB Accession Numbers: G0-8904 (EcoCyc), b4434, ECK1902

Synonyms: IS092

Superclasses: Misc-RNAs

Regulation Summary Diagram: ?

Regulation summary diagram for isrB

Summary:
IS092 encodes a small RNA of approximately 150-160 nt in length [Chen02a].

IS092 RNA is transcribed from the region between the yecJ and yecR genes; the nucleotide position given encompasses this entire area [Chen02a, Hershberg03].

Review: [Hershberg03]

Map Position: [1,985,863 <- 1,986,022] (42.8 centisomes, 154°)
Length: 160 bp

Unification Links: ASAP:ABE-0047254 , EchoBASE:EB4518 , EcoliWiki:b4434 , PortEco:isrB , RegulonDB:G0-8904

MultiFun Terms: information transfer RNA related


Gene Local Context (not to scale): ?

Gene local context diagram

Transcription Unit:

Transcription-unit diagram

Notes:

History:
Suzanne Paley on Thu Oct 21, 2004:
Position updated based on U00096.2 release of genome


References

Chen02a: Chen S, Lesnik EA, Hall TA, Sampath R, Griffey RH, Ecker DJ, Blyn LB (2002). "A bioinformatics based approach to discover small RNA genes in the Escherichia coli genome." Biosystems 65(2-3);157-77. PMID: 12069726

Hershberg03: Hershberg R, Altuvia S, Margalit H (2003). "A survey of small RNA-encoding genes in Escherichia coli." Nucleic Acids Res 31(7);1813-20. PMID: 12654996


Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 19.0 on Tue Sep 1, 2015, biocyc13.