Summary of Escherichia coli, Strain K-12 substr. MG1655, version 20.0

Authors: Peter D. Karp1, Ingrid Keseler1, Carol Fulcher1, Anamika Kothari1, Suzanne Paley1, Markus Krummenacker1, Dan Weaver1, Ian Paulsen2, Amanda Mackie2, Julio Collado-Vides3, Cesar Bonavides-Martinez3, Socorro Gama-Castro3, Alberto Santos-Zavaleta3, Verena Weiss3, John L Ingraham4, Robert Gunsalus5, Robert LaRossa

1SRI International, 2Macquarie University, 3Centro de Ciencias Genomicas, Universidad Nacional Autonoma de Mexico, 4University of California, Davis, 5University of California, Los Angeles

Summary:
EcoCyc is a model-organism database for Escherichia coli K-12 MG1655. For more information, see URL EcoCyc.org.

The E. coli genome sequence used in EcoCyc has been updated from version 2 to version 3, GenBank accession number U00096.3, for release 20.0 of EcoCyc. Despite the involvement of EcoCyc staff in ongoing updates to the U00096 record, some annotation differences may be found between U00096 and EcoCyc, such as due to recent updates to EcoCyc.


Citations: [Keseler13]

Taxonomic lineage: cellular organisms, Bacteria , Proteobacteria, Gammaproteobacteria, Enterobacteriales, Enterobacteriaceae, Escherichia, Escherichia coli, Escherichia coli K-12, Escherichia coli K-12 substr. MG1655

Unification Links: GOLD:0072557, NCBI-Taxonomy:511145

Organism or Sample Properties
Relationship To Oxygenfacultative
Temperature Rangemesophile

RepliconTotal GenesProtein GenesRNA GenesPseudogenesSize (bp)NCBI Link
Chromosome450642872071434,641,652
Genes without a physical map position:2

Pathways:339
Enzymatic Reactions:1884
Transport Reactions:470
Polypeptides:4514
Protein Complexes:1078
Enzymes:1564
Transporters:269
Compounds:2678
Transcription Units:3547
tRNAs:89
Growth Media:431
Transcriptional Regulation:3450

Genetic Code Number:
11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)

PGDB Unique ID: 0

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References

Keseler13: Keseler IM, Mackie A, Peralta-Gil M, Santos-Zavaleta A, Gama-Castro S, Bonavides-Martinez C, Fulcher C, Huerta AM, Kothari A, Krummenacker M, Latendresse M, Muniz-Rascado L, Ong Q, Paley S, Schroder I, Shearer AG, Subhraveti P, Travers M, Weerasinghe D, Weiss V, Collado-Vides J, Gunsalus RP, Paulsen I, Karp PD (2013). "EcoCyc: fusing model organism databases with systems biology." Nucleic Acids Res 41(D1);D605-12. PMID: 23143106


Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by Pathway Tools version 20.0 (software by SRI International) on Fri May 6, 2016, BIOCYC13.