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Summary of Escherichia coli, Strain K-12 substr. MG1655, version 19.1

Authors: Peter D. Karp1, Ingrid Keseler1, Carol Fulcher1, Anamika Kothari1, Suzanne Paley1, Markus Krummenacker1, Dan Weaver1, Ian Paulsen2, Amanda Mackie2, Julio Collado-Vides3, Cesar Bonavides-Martinez3, Socorro Gama-Castro3, Alberto Santos-Zavaleta3, Verena Weiss3, John L Ingraham4, Robert Gunsalus5

1SRI International, 2Macquarie University, 3Centro de Ciencias Genomicas, Universidad Nacional Autonoma de Mexico, 4University of California, Davis, 5University of California, Los Angeles

Summary:
EcoCyc is a model-organism database for Escherichia coli K-12 MG1655. For more information, see URL EcoCyc.org.

The E. coli genome sequence used in EcoCyc is GenBank accession number U00096.2. Despite the involvement of EcoCyc staff in ongoing updates to the U00096 record, some annotation differences may be found between U00096 and EcoCyc, such as due to recent updates to EcoCyc.


Citations: [Keseler13]

Taxonomic lineage: cellular organisms , Bacteria , Proteobacteria , Gammaproteobacteria , Enterobacteriales , Enterobacteriaceae , Escherichia , Escherichia coli , Escherichia coli K-12 , Escherichia coli K-12 substr. MG1655

Unification Links: GOLD:0072557 , NCBI-Taxonomy:511145

Organism or Sample Properties
Relationship To Oxygenfacultative
Temperature Rangemesophile

RepliconTotal GenesProtein GenesRNA GenesPseudogenesSize (bp)NCBI Link
Chromosome450042822061444,639,675
Genes without a physical map position:2

Pathways:337
Enzymatic Reactions:1763
Transport Reactions:408
Polypeptides:4541
Protein Complexes:1064
Enzymes:1545
Transporters:272
Compounds:2547
Transcription Units:3543
tRNAs:89
Growth Media:431

Genetic Code Number:
11 -- Bacterial and Plant Plastid (same as Standard, except for alternate initiation codons)

PGDB Unique ID: 0

Copyright SRI International 1999-2015, Marine Biological Laboratory 1998-2001, DoubleTwist Inc 1998-1999. All Rights Reserved.


References

Ibba00: Ibba M, Soll D (2000). "Aminoacyl-tRNA synthesis." Annu Rev Biochem 69;617-50. PMID: 10966471

Keseler13: Keseler IM, Mackie A, Peralta-Gil M, Santos-Zavaleta A, Gama-Castro S, Bonavides-Martinez C, Fulcher C, Huerta AM, Kothari A, Krummenacker M, Latendresse M, Muniz-Rascado L, Ong Q, Paley S, Schroder I, Shearer AG, Subhraveti P, Travers M, Weerasinghe D, Weiss V, Collado-Vides J, Gunsalus RP, Paulsen I, Karp PD (2013). "EcoCyc: fusing model organism databases with systems biology." Nucleic Acids Res 41(D1);D605-12. PMID: 23143106


Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 19.0 on Sat Aug 29, 2015, biocyc13.