Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Summary of Escherichia coli, Strain O157:H7 str. EDL933, version 18.5

Authors: Jonathan Wagg, SRI

Summary:
The primary data source for this dataset was the annotated genome sequence of Escherichia coli, serotype O157:H7, strain EDL933 [Perna01]. This annotated genome has been deposited in public databases (accession number AE005174). This sequence contained gaps which have since been better characterized. The corresponding gap sequences were not utilized for generation of this dataset.

This dataset was derived computationally using the Pathologic program [Karp99], with some additional limited manual curation.

Taxonomic lineage: cellular organisms , Bacteria , Proteobacteria , Gammaproteobacteria , Enterobacteriales , Enterobacteriaceae , Escherichia , Escherichia coli , Escherichia coli O157:H7 , Escherichia coli O157:H7 str. EDL933

Unification Links: GOLD:Gp0097270 , NCBI-Taxonomy:155864

Organism or Sample Properties
Relationship To Oxygenfacultative
Trophic Levelheterotroph
Temperature Rangemesophile
Biotic Relationshipfree-living
symbiont
Pathogenicityhuman

RepliconTotal GenesProtein GenesRNA GenesPseudogenesSize (bp)NCBI Link
Chromosome5476534812805,528,445

Pathways:277
Enzymatic Reactions:1486
Transport Reactions:161
Polypeptides:5360
Protein Complexes:136
Enzymes:1193
Transporters:192
Compounds:1044
Transcription Units:3531
tRNAs:100

Genetic Code Number:
11 -- Bacterial and Plant Plastid (same as Standard, except for alternate initiation codons)

PGDB Unique ID: 7E

Copyright © 2014, SRI International. All Rights Reserved.


References

Karp99: Karp PD, Krummenacker M, Paley S, Wagg J (1999). "Integrated pathway-genome databases and their role in drug discovery." Trends Biotechnol 17(7);275-81. PMID: 10370234

Perna01: Perna NT, Plunkett G, Burland V, Mau B, Glasner JD, Rose DJ, Mayhew GF, Evans PS, Gregor J, Kirkpatrick HA, Posfai G, Hackett J, Klink S, Boutin A, Shao Y, Miller L, Grotbeck EJ, Davis NW, Lim A, Dimalanta ET, Potamousis KD, Apodaca J, Anantharaman TS, Lin J, Yen G, Schwartz DC, Welch RA, Blattner FR (2001). "Genome sequence of enterohaemorrhagic Escherichia coli O157:H7." Nature 409(6819);529-33. PMID: 11206551


Report Errors or Provide Feedback
Page generated by SRI International Pathway Tools version 18.5 on Wed Dec 17, 2014, BIOCYC14B.