Authors: Jonathan Wagg, SRI
The primary data source for this dataset was the annotated genome sequence of Escherichia coli, serotype O157:H7, strain EDL933 [Perna01]. This annotated genome has been deposited in public databases (accession number AE005174). This sequence contained gaps which have since been better characterized. The corresponding gap sequences were not utilized for generation of this dataset.
This dataset was derived computationally using the Pathologic program [Karp99], with some additional limited manual curation.
|Organism or Sample Properties|
|Relationship To Oxygen||facultative|
|Biotic Relationship||free-living |
|Replicon||Total Genes||Protein Genes||RNA Genes||Pseudogenes||Size (bp)||NCBI Link|
Genetic Code Number:
11 -- Bacterial and Plant Plastid (same as Standard, except for alternate initiation codons)
PGDB Unique ID: 7E
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Perna01: Perna NT, Plunkett G, Burland V, Mau B, Glasner JD, Rose DJ, Mayhew GF, Evans PS, Gregor J, Kirkpatrick HA, Posfai G, Hackett J, Klink S, Boutin A, Shao Y, Miller L, Grotbeck EJ, Davis NW, Lim A, Dimalanta ET, Potamousis KD, Apodaca J, Anantharaman TS, Lin J, Yen G, Schwartz DC, Welch RA, Blattner FR (2001). "Genome sequence of enterohaemorrhagic Escherichia coli O157:H7." Nature 409(6819);529-33. PMID: 11206551
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