Summary of Escherichia coli, Strain O157:H7 str. EDL933, version 19.5

Authors: Jonathan Wagg, SRI

The primary data source for this dataset was the annotated genome sequence of Escherichia coli, serotype O157:H7, strain EDL933 [Perna01]. This annotated genome has been deposited in public databases (accession number AE005174). This sequence contained gaps which have since been better characterized. The corresponding gap sequences were not utilized for generation of this dataset.

This dataset was derived computationally using the Pathologic program [Karp99], with some additional limited manual curation.

Taxonomic lineage: cellular organisms, Bacteria , Proteobacteria, Gammaproteobacteria, Enterobacteriales, Enterobacteriaceae, Escherichia, Escherichia coli, Escherichia coli O157:H7, Escherichia coli O157:H7 str. EDL933

Unification Links: GOLD:0097270, NCBI-Taxonomy:155864

Organism or Sample Properties
Relationship To Oxygenfacultative
Trophic Levelheterotroph
Temperature Rangemesophile
Biotic Relationshipfree-living

RepliconTotal GenesProtein GenesRNA GenesPseudogenesSize (bp)NCBI Link

Enzymatic Reactions:1486
Transport Reactions:161
Protein Complexes:136
Transcription Units:3531

Genetic Code Number:
11 -- Bacterial and Plant Plastid (same as Standard, except for alternate initiation codons)

PGDB Unique ID: 7E

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Karp99: Karp PD, Krummenacker M, Paley S, Wagg J (1999). "Integrated pathway-genome databases and their role in drug discovery." Trends Biotechnol 17(7);275-81. PMID: 10370234

Perna01: Perna NT, Plunkett G, Burland V, Mau B, Glasner JD, Rose DJ, Mayhew GF, Evans PS, Gregor J, Kirkpatrick HA, Posfai G, Hackett J, Klink S, Boutin A, Shao Y, Miller L, Grotbeck EJ, Davis NW, Lim A, Dimalanta ET, Potamousis KD, Apodaca J, Anantharaman TS, Lin J, Yen G, Schwartz DC, Welch RA, Blattner FR (2001). "Genome sequence of enterohaemorrhagic Escherichia coli O157:H7." Nature 409(6819);529-33. PMID: 11206551

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