Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
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MetaCyc All-Genes Class: carbon compounds

Parent Classes:
carbon utilization

Instances:
AB079610 (trehalose phosphorylase subunit) ,
aceE (subunit of E1p component of pyruvate dehydrogenase complex) ,
aceF (AceF-dihydrolipoate) ,
ackA (acetate kinase) ,
acnB (bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase) ,
acs (acetyl-CoA synthetase (AMP-forming)) ,
aes (acetyl esterase) ,
aldA ,
aldB ,
aldB (α-acetolactate decarboxylase subunit) ,
als (α-acetolactate synthase subunit) ,
alsA (D-allose ABC transporter - ATP binding subunit) ,
alsB (D-allose ABC transporter - periplasmic binding protein) ,
alsC (D-allose ABC transporter - membrane subunit) ,
alsE (allulose-6-phosphate 3-epimerase) ,
alsK (D-allose kinase) ,
amyA (α-amylase) ,
apgM1 (phosphoglycerate mutase subunit) ,
araA (L-arabinose isomerase monomer) ,
araB (L-ribulokinase monomer) ,
araD (L-ribulose 5-phosphate 4-epimerase monomer) ,
araE (arabinose:H+ symporter) ,
araF (arabinose ABC transporter - periplasmic binding protein) ,
araG (arabinose ABC transporter - ATP binding subunit) ,
araH (arabinose ABC transporter - membrane subunit) ,
ascB (6-phospho-β-glucosidase; cryptic) ,
ascF ,
bglA (6-phospho-β-glucosidase A) ,
bglB (6-phospho-β-glucosidase B; cryptic) ,
bglF ,
bglX (β-D-glucoside glucohydrolase, periplasmic) ,
budC (acetoin reductase subunit) ,
budC (acetoin reductase subunit) ,
butA (2,3-butanediol dehydrogenase subunit) ,
caiT ,
camA (NADH-putidaredoxin reductase) ,
camB (oxidized putidaredoxin) ,
camC (cytochrome P-450cam) ,
camD (5-exo-hydroxycamphor dehydrogenase) ,
camE25-1 (camphor 1,2-monooxygenase oxygenating component monomer) ,
chbA (chitobiose PTS permease - ChbA subunit) ,
chbB (chitobiose PTS permease - ChbB subunit) ,
chbC (chitobiose PTS permease - ChbC subunit) ,
chbF (monoacetylchitobiose-6-phosphate hydrolase) ,
chnD (6-hydroxyhexanoate dehydrogenase) ,
citT (citrate:succinate antiporter) ,
cpsB (mannose-1-phosphate guanylyltransferase) ,
crr (Enzyme IIAGlc; Crr) ,
darK ,
dctA (C4 dicarboxylate / orotate:H+ symporter) ,
dcuA (dicarboxylate transporter DcuA) ,
dcuB (dicarboxylate transporter DcuB) ,
dcuC (dicarboxylate transporter DcuC) ,
dgoA (2-oxo-3-deoxygalactonate 6-phosphate aldolase) ,
dgoD (D-galactonate dehydratase) ,
dgoK (2-dehydro-3-deoxygalactonate kinase) ,
dhaK (dihydroxyacetone kinase subunit K) ,
dhaL (dihydroxyacetone kinase subunit L) ,
dhaM (dihydroxyacetone kinase subunit M) ,
dkgA (methylglyoxal reductase [multifunctional]) ,
dkgB (methylglyoxal reductase [multifunctional]) ,
dmlA (D-malate / 3-isopropylmalate dehydrogenase (decarboxylating)) ,
eda ,
exuT (hexuronate transporter) ,
fae (formaldehyde-activating enzyme subunit) ,
FAU1 (methenyltetrahydrofolate synthetase) ,
fbaA (fructose bisphosphate aldolase monomer) ,
fdh1A (NAD-dependent formate dehydrogenase α subunit) ,
fdh1B (NAD-dependent formate dehydrogenase β subunit) ,
fhcA (formyltransferase/hydrolase complex α subunit) ,
fhcC (formyltransferase/hydrolase complex γ subunit) ,
focA ,
frlB (fructoselysine 6-phosphate deglycase monomer) ,
frlC (fructoselysine 3-epimerase) ,
frlD (fructoselysine 6-kinase) ,
fruA (fructose PTS permease - FruA subunit) ,
fruB (fructose PTS permease - FruB subunit) ,
frvA (predicted PTS permease - FrvA subunit) ,
frwB (predicted PTS permease - FrwB subunit) ,
fucA ,
fucI ,
fucI (L-fucose isomerase monomer) ,
fucK (L-fuculokinase) ,
fucO (L-1,2-propanediol oxidoreductase) ,
fucP (fucose:H+ symporter) ,
fucU (L-fucose mutarotase) ,
gabP (4-aminobutyrate:H+ symporter) ,
gad (gluconate dehydratase) ,
galE (UDP-glucose 4-epimerase monomer) ,
galE (UDP-glucose-4-epimerase) ,
galK (galactokinase) ,
galM (aldose-1-epimerase) ,
galM (galactose-1-epimerase) ,
galP (galactose:H+ symporter) ,
galT (galactose-1-phosphate uridylyltransferase) ,
galU (UTP--glucose-1-phosphate uridylyltransferase) ,
gapN (NAD+-dependent glyceraldehyde-3-phosphate dehydrogenase subunit) ,
garD (galactarate dehydratase) ,
garK (glycerate kinase I) ,
garL ,
garP (galactarate / glucarate / glycerate transporter GarP) ,
garR (tartronate semialdehyde reductase) ,
gatA (galactitol PTS permease - GatA subunit) ,
gatB (galactitol PTS permease - GatB subunit) ,
gatC (galactitol PTS permease - GatC subunit) ,
gatD (galactitol-1-phosphate dehydrogenase) ,
gatY ,
gatZ ,
gcd (quinoprotein glucose dehydrogenase) ,
gcdH (glutaryl-CoA dehydrogenase subunit) ,
gdh (aldose 1-dehydrogenase subunit) ,
gdh (glcDH) ,
gdh (glucose dehydrogenase subunit) ,
gdh (glucose dehydrogenase subunit) ,
gdhIV (glucose dehydrogenase IV monomer) ,
ghrB ,
glcA (glycolate / lactate:H+ symporter) ,
glcB (malate synthase G) ,
glcK (glucokinase) ,
glgP ,
glgX (glycogen phosphorylase-limit dextrin α-1,6-glucohydrolase) ,
glk (glucokinase subunit) ,
glk (glucokinase) ,
GLK1 (glucokinase) ,
glxK (glycerate kinase II) ,
glxR (tartronate semialdehyde reductase 2) ,
glyA (serine hydroxymethyltransferase subunit) ,
glyA (serine hydroxymethyltransferase) ,
glyA1 (serine hydroxymethyltransferase 1 subunit) ,
gnd ,
gndA (6-phophogluconate dehydrogenase subunit) ,
gpmM (2,3-bisphosphoglycerate-independent phosphoglycerate mutase) ,
gudD (D-glucarate dehydratase) ,
gudP (galactarate / glucarate / glycerate transporter GudP) ,
hcaB (2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase) ,
hcaC (3-phenylpropionate dioxygenase, predicted ferredoxin subunit) ,
hcaD (3-phenylpropionate dioxygenase, predicted ferredoxin reductase subunit) ,
hcaE (3-phenylpropionate dioxygenase, α subunit) ,
hcaF (3-phenylpropionate dioxygenase, β subunit) ,
hprA (hydroxypyruvate reductase subunit) ,
hprA (hydroxypyruvate reductase subunit) ,
idnD (L-idonate 5-dehydrogenase) ,
idnK (D-gluconate kinase, thermosensitive) ,
idnO (5-keto-D-gluconate 5-reductase) ,
kbaY ,
kbaZ ,
kdgK (2-keto-3-deoxygluconokinase) ,
kdgT (2-dehydro-3-deoxy-D-gluconate:H+ symporter) ,
kduI (predicted 5-keto 4-deoxyuronate isomerase monomer) ,
kgtP (α-ketoglutarate:H+ symporter) ,
lacA (galactoside O-acetyltransferase monomer) ,
lacY (lactose / melibiose:H+ symporter LacY) ,
lacZ (β-galactosidase monomer) ,
ldcC ,
lgoD (L-galactonate oxidoreductase) ,
lldP ((R)-lactate / (S)-lactate / glycolate:H+ symporter LldP) ,
lpd (E3 monomer) ,
lyxK (L-xylulose kinase) ,
mak (manno(fructo)kinase) ,
malF (maltose ABC transporter - membrane subunit) ,
malG (maltose ABC transporter - membrane subunit) ,
malK (maltose ABC transporter - ATP binding subunit) ,
malP (maltodextrin phosphorylase monomer) ,
malQ (amylomaltase) ,
malS (α-amylase) ,
malT (MalT transcriptional activator) ,
malX (MalX PTS permease) ,
malY (bifunctional β-cystathionase, PLP-dependent and regulator of maltose regulon) ,
malZ (maltodextrin glucosidase) ,
manA (mannose-6-phosphate isomerase) ,
manX (mannose PTS permease - ManX subunit) ,
manY (mannose PTS permease - ManY subunit) ,
manZ (mannose PTS permease - ManZ subunit) ,
mclA (malyl coenzyme A lyase subunit) ,
mdh (malate dehydrogenase) ,
melA (α-galactosidase monomer) ,
melB (melibiose:H+/Na+/Li+ symporter) ,
mglA (galactose ABC transporter - ATP binding subunit) ,
mglB (galactose ABC transporter - periplasmic binding protein) ,
mglC (galactose ABC transporter - membrane subunit) ,
mhpA (3-(3-hydroxyphenyl)propionate 2-hydroxylase) ,
mhpC (2-hydroxy-6-ketonona-2,4-dienedioate hydrolase) ,
mhpD ,
mhpE (4-hydroxy-2-ketovalerate aldolase) ,
mhpF (acetaldehyde dehydrogenase 2) ,
mmoB (soluble methane monooxygenase regulatory component) ,
mmoB (soluble methane monooxygenase regulatory component) ,
mmoC (soluble methane monooxygenase reductase component) ,
mmoC (soluble methane monooxygenase reductase component) ,
mmoX (soluble methane monooxygenase hydroxylase component α subunit) ,
mmoX (soluble methane monooxygenase hydroxylase component α subunit) ,
mmoY (soluble methane monooxygenase hydroxylase component β subunit) ,
mmoY (soluble methane monooxygenase hydroxylase component β subunit) ,
mmoZ (soluble methane monooxygenase hydroxylase component γ subunit) ,
mmoZ (soluble methane monooxygenase hydroxylase component γ subunit) ,
mngA (2-O-α-mannosyl-D-glycerate PTS permease) ,
mngB (α-mannosidase) ,
mro (mutarotase) ,
mtdB ,
mtdB ,
mtlA ,
mtlD (mannitol-1-phosphate 5-dehydrogenase) ,
murP (N-acetylmuramic acid PTS permease / anhydro-N-acetylmuramic acid permease) ,
nanM (N-acetylneuraminate mutarotase) ,
nbzAa (reductaseNBZ) ,
nbzAb (ferredoxinNBZ) ,
nbzAc (oxygenaseNBZα) ,
nbzAd (oxygenaseNBZβ) ,
no name given (phthalyl amidase) ,
nylA (6-aminohexanoate cyclic dimer subunit) ,
nylB (6-aminohexanoate linear dimer hydrolase subunit) ,
nylC (6-aminohexanoate oligomer hydrolase polypeptide II) ,
orfY (soluble methane monooxygenase MMOD component) ,
orfY (soluble methane monooxygenase MMOD component) ,
otsA (trehalose-6-phosphate synthase) ,
otsB (trehalose-6-phosphate phosphatase) ,
paaA (ring 1,2-phenylacetyl-CoA epoxidase, monooxygenase subunit) ,
paaB (ring 1,2-phenylacetyl-CoA epoxidase subunit) ,
paaC (ring 1,2-phenylacetyl-CoA epoxidase, structural subunit) ,
paaE (ring 1,2-phenylacetyl-CoA epoxidase, reductase subunit) ,
paaG (predicted ring 1,2-epoxyphenylacetyl-CoA isomerase (oxepin-CoA forming)) ,
paaH (3-hydroxyadipyl-CoA dehydrogenase (NAD+)) ,
paaJ (β-ketoadipyl-CoA thiolase) ,
paaY (2-hydroxycyclohepta-1,4,6-triene-1-carboxyl-CoA thioesterase) ,
paaZ (oxepin-CoA hydrolase/3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase) ,
pfkA (6-phosphofructokinase-1 monomer) ,
pfkB (6-phosphofructokinase-2 monomer) ,
pgcA (α-phosphoglucomutase) ,
PGI1 (phosphoglucoisomerase subunit) ,
pgm (phosphoglucomutase) ,
pgm (phosphoglycerate mutase subunit) ,
pgmB (β-phosphoglucomutase) ,
pmoA (particulate methane monooxygenase hydroxylase component β subunit) ,
pmoB (particulate methane monooxygenase hydroxylase component α subunit) ,
pmoC (particulate methane monooxygenase hydroxylase component γ subunit) ,
poxB (pyruvate oxidase monomer) ,
ppcA (phosphoenolpyruvate carboxylase subunit) ,
ppgK (polyphosphate-dependent glucokinase subunit) ,
ppgK (polyphosphate-dependent glucokinase) ,
proX (glycine betaine / proline ABC transporter - periplasmic binding protein) ,
prpB (2-methylisocitrate lyase) ,
prpC (2-methylcitrate synthase) ,
prpD (2-methylcitrate dehydratase) ,
PsTP (trehalose phosphorylase subunit) ,
pta ,
ptsG (glucose PTS permease - PtsG subunit) ,
rbsA (ribose ABC transporter - putative ATP binding subunit) ,
rbsB (ribose ABC transporter - putative periplasmic binding protein) ,
rbsC (ribose ABC transporter - membrane subunit) ,
rbsD (ribose pyranase) ,
rbsK (ribokinase) ,
rhaA (L-rhamnose isomerase) ,
rhaB (L-rhamnulose kinase) ,
rhaD (rhamnulose-1-phosphate aldolase monomer) ,
rhaEW (bifunctional L-rhamnulose 1-phosphate aldolase/lactaldehyde dehydrogenase) ,
rhaT (rhamnose / lyxose:H+ symporter) ,
rmpA (hexulose-6-phosphate synthase subunit) ,
rpe (ribulose phosphate 3-epimerase) ,
rpe (ribulose-5-phosphate 3-epimerase) ,
rpiA (ribose-5-phosphate isomerase A) ,
rpiB (allose-6-phosphate isomerase / ribose-5-phosphate isomerase B monomer) ,
rubB (rubredoxin 1) ,
sad ,
setB (sugar / lactose efflux transporter SetB) ,
sgbE (L-ribulose-5-phosphate 4-epimerase) ,
srlA (sorbitol PTS permease - SrlA subunit) ,
srlB (sorbitol PTS permease - SrlB subunit) ,
srlD ,
srlE (sorbitol PTS permease - SrlE subunit) ,
SSO3198 (galactonate dehydratase / gluconate dehydratase) ,
SSO224174 (KDG-aldolase subunit) ,
tktA (transketolase I) ,
tktB (transketolase II) ,
TM0066 (4-hydroxy-2-oxoglutarate aldolase / 2-dehydro-3-deoxy-phosphogluconate aldolase) ,
treA (trehalose-6-phosphate hydrolase) ,
treC (trehalose-6-phosphate hydrolase) ,
treF (cytoplasmic trehalase) ,
trePP (trehalose-6-phosphate phosphorylase) ,
treS (trehalose synthase subunit) ,
treS (trehalose synthase) ,
treX (isoamylase) ,
treY (maltooligosyl-trehalose synthase) ,
treZ (maltooligosyl-trehalose trehalohydrolase) ,
tsaB (4-toluene-sulfonate monooxygenase reductase subunit) ,
tsaM ,
TSase (trehalose phosphorylase subunit) ,
uhpT (hexose-6-phosphate:phosphate antiporter) ,
uidA (β-D-glucuronidase) ,
uidB (glucuronide:H+ symporter) ,
ulaD (3-keto-L-gulonate 6-phosphate decarboxylase) ,
uxaA (D-altronate dehydratase) ,
uxaB (altronate oxidoreductase) ,
uxaC (D-glucuronate isomerase / D-galacturonate isomerase) ,
uxuA (D-mannonate dehydratase) ,
uxuB (D-mannonate oxidoreductase) ,
xapB (xanthosine:H+ symporter XapB) ,
xylA ,
xylB (xylulokinase) ,
xylE (xylose:H+ symporter) ,
xylF (xylose ABC transporter - periplasmic binding protein) ,
xylG (xylose ABC transporter - ATP binding subunit) ,
xylH (xylose ABC transporter - membrane subunit) ,
yagF (CP4-6 prophage; D-xylonate dehydratase) ,
ydeA (arabinose efflux transporter) ,
yiaK (2,3-diketo-L-gulonate reductase monomer) ,
yihS (sulfoquinovose isomerase) ,
yihT (6-deoxy-6-sulfofructose-1-phosphate aldolase) ,
yihU (3-sulfolactaldehyde reductase) ,
yihV (6-deoxy-6-sulfofructose kinase) ,
yjhG (KpLE2 phage-like element; D-xylonate dehydratase) ,
zwf (glucose 6-phosphate-1-dehydrogenase)


Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of MetaCyc: Caspi et al, Nucleic Acids Research 42:D459-D471 2014
Page generated by SRI International Pathway Tools version 18.5 on Wed Nov 26, 2014, biocyc11.