MetaCyc All-Genes Class: defense/survival

The adaptation to stress was meant to cover the classical stress inducers such as osmotic pressure, temperature, starvation. The protection category was meant to cover those related to compound / chemical induced killing or stress. The defense/survival category was meant to cover virulence factors (although K-12 does not have many).

Parent Classes:
cell processes

alaE (L-alanine exporter),
casA (Cascade subunit A),
casB (Cascade subunit B),
casC (Cascade subunit C),
casD (Cascade subunit D),
casE (crRNA endonuclease),
chpA (MazF toxin of the MazF-MazE toxin-antitoxin system that exhibits ribonuclease activity),
chpR (MazE antitoxin of the MazF-MazE toxin-antitoxin system),
chpS (ChpS antitoxin of the ChpB-ChpS toxin-antitoxin system),
msrA (methionine sulfoxide reductase A),
yefM (YefM antitoxin of the YoeB-YefM toxin-antitoxin pair and DNA binding transcriptional repressor),
yoeB (toxin of the YoeB-YefM toxin-antitoxin pair)

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Please cite the following article in publications resulting from the use of MetaCyc: Caspi et al, Nucleic Acids Research 42:D459-D471 2014
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