Metabolic Modeling Tutorial
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Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
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MetaCyc All-Genes Class: membrane

Parent Classes:
cell structure

Instances:
aaeA (hydroxylated, aromatic carboxylic acid efflux transporter - putative membrane fusion protein) ,
aaeB (hydroxylated, aromatic carboxylic acid efflux transporter - putative membrane subunit) ,
aas (2-acylglycerophosphoethanolamine acyltransferase / acyl-ACP synthetase) ,
abgT (p-aminobenzoyl glutamate:H+ symporter) ,
actP ,
adeQ (adenine transporter) ,
adiC ,
agaD ,
alsC (D-allose ABC transporter - membrane subunit) ,
amiD (anhydro-N-acetylmuramoyl-L-alanine amidase) ,
ampG (muropeptide:H+ symporter) ,
amtB ,
appB (cytochrome bd-II terminal oxidase subunit II) ,
appC (cytochrome bd-II terminal oxidase subunit I) ,
aqpZ ,
araE (arabinose:H+ symporter) ,
araH (arabinose ABC transporter - membrane subunit) ,
arnE (undecaprenyl-phosphate-α-L-Ara4N flippase - ArnE subunit) ,
arnF (undecaprenyl-phosphate-α-L-Ara4N flippase - ArnF subunit) ,
aroP (aromatic amino acid:H+ symporter AroP) ,
arsB ,
artM (L-arginine ABC transporter - membrane subunit) ,
artQ (L-arginine ABC transporter - membrane subunit) ,
ascF ,
atoB ,
atpA (ATP synthase F1 complex - alpha subunit) ,
atpB (ATP synthase F0 complex - a subunit) ,
atpC (ATP synthase F1 complex - epsilon subunit) ,
atpD (ATP synthase F1 complex - beta subunit) ,
atpE ,
atpF (ATP synthase F0 complex - b subunit) ,
atpG (ATP synthase F1 complex - gamma subunit) ,
atpH (ATP synthase F1 complex - delta subunit) ,
bacA (undecaprenyl pyrophosphate phosphatase) ,
betA (choline dehydrogenase) ,
betT (choline:H+ symporter) ,
bglF ,
brnQ (branched chain amino acid transporter BrnQ) ,
btuC (vitamin B12 ABC transporter - membrane subunit) ,
cadB (cadaverine:H+ symporter / lysine:cadaverine antiporter) ,
caiT ,
ccmB (protoheme IX ABC transporter - membrane subunit CcmB) ,
ccmC (protoheme IX ABC transporter - membrane subunit CcmC) ,
ccmD (protoheme IX ABC transporter - membrane subunit CcmD) ,
cdsA (CDP-diglyceride synthetase) ,
chaA (Na+ / K+:H+ antiporter ChaA) ,
chbC (chitobiose PTS permease - ChbC subunit) ,
citT (citrate:succinate antiporter) ,
clsA (cardiolipin synthase 1) ,
codB (cytosine transporter) ,
copA (Cu+ efflux ATPase) ,
corA (Ni2+ / Co2+ / Mg2+ transporter) ,
cusA (copper / silver efflux system - membrane subunit) ,
cusC (copper / silver efflux system - outer membrane porin) ,
cycA (serine / alanine / glycine / cycloserine:H+symporter) ,
cydA (cytochrome bd-I terminal oxidase subunit I) ,
cydB (cytochrome bd-I terminal oxidase subunit II) ,
cydC (glutathione / L-cysteine efflux transporter - CydC subunit) ,
cydD (glutathione / L-cysteine efflux transporter - CydD subunit) ,
cyoA (cytochrome bo terminal oxidase subunit II) ,
cyoB (cytochrome bo terminal oxidase subunit I) ,
cyoC (cytochrome bo terminal oxidase subunit III) ,
cyoD (cytochrome bo terminal oxidase subunit IV) ,
cyoE (heme O synthase) ,
cysU (sulfate / thiosulfate ABC transporter - membrane subunit) ,
cysW (sulfate / thiosulfate ABC transporter - membrane subunit) ,
dauA (C4 dicarboxylate / C4 monocarboxylate transporter DauA) ,
dctA (C4 dicarboxylate / orotate:H+ symporter) ,
dcuA (dicarboxylate transporter DcuA) ,
dcuB (dicarboxylate transporter DcuB) ,
dcuC (dicarboxylate transporter DcuC) ,
dgkA ,
dld (D-lactate dehydrogenase) ,
dmsA (dimethyl sulfoxide reductase, chain A) ,
dmsB (dimethyl sulfoxide reductase, chain B) ,
dmsC (dimethyl sulfoxide reductase, chain C) ,
dppB (dipeptide ABC transporter - putative membrane subunit) ,
dppC (dipeptide ABC transporter - putative membrane subunit) ,
dsbB (protein disulfide oxidoreductase - DsbBoxidised) ,
dsbD (protein disulfide oxidoreductase - DsbDoxidized) ,
dtpA (tripeptide / dipeptide:H+ symporter DtpA) ,
dtpB (dipeptide / tripeptide:H+ symporter DtpB) ,
dtpC (dipeptide / tripeptide:H+ symporter DptC) ,
dtpD (dipeptide:H+ symporter DtpD) ,
emrE ,
emtA (lytic murein transglycosylase E) ,
entB (EntB monomer) ,
entD (phosphopantetheinyl transferase) ,
entE ,
entF (aryl carrier protein / L-seryl-AMP synthase) ,
entS (enterobactin efflux transporter EntS) ,
eptA (phosphoethanolamine transferase EptA) ,
eptC (phosphoethanolamine transferase EptC) ,
etk (autophosphorylating protein tyrosine kinase) ,
exbB (TonB energy transducing system - ExbB subunit) ,
exuT (hexuronate transporter) ,
fdnH (formate dehydrogenase N, β subunit) ,
fdnI (formate dehydrogenase N, γ subunit) ,
fdoH (formate dehydrogenase-O, β subunit) ,
fdoI (formate dehydrogenase-O, γ subunit) ,
fecC (ferric dicitrate ABC transporter - membrane subunit) ,
fecD (ferric dicitrate ABC transporter - membrane subunit) ,
feoB (Fe2+ transporter FeoB) ,
fepD (ferric enterobactin ABC transporter - membrane subunit) ,
fepG (ferric enterobactin ABC transporter - membrane subunit) ,
fhuB (iron (III) hydroxamate ABC transporter - membrane subunit) ,
fieF ,
focA ,
frdC (fumarate reductase membrane protein) ,
frdD (fumarate reductase membrane protein) ,
frlA (fructoselysine / psicoselysine transporter) ,
fruA (fructose PTS permease - FruA subunit) ,
fsr (fosmidomycin efflux transporter) ,
ftsH (ATP-dependent zinc metalloprotease FtsH) ,
ftsW (essential cell division protein FtsW; lipid II flippase) ,
fucP (fucose:H+ symporter) ,
gabP (4-aminobutyrate:H+ symporter) ,
gadC (glutamic acid:4-aminobutyrate antiporter) ,
galP (galactose:H+ symporter) ,
garP (galactarate / glucarate / glycerate transporter GarP) ,
gatA (galactitol PTS permease - GatA subunit) ,
gatC (galactitol PTS permease - GatC subunit) ,
gcd (quinoprotein glucose dehydrogenase) ,
ghxP (guanine / hypoxanthine transporter GhxP) ,
glcA (glycolate / lactate:H+ symporter) ,
glnP (glutamine ABC transporter - membrane subunit) ,
glpA (anaerobic glycerol-3-phosphate dehydrogenase subunit A) ,
glpB (anaerobic glycerol-3-phosphate dehydrogenase subunit B) ,
glpC (anaerobic glycerol-3-phosphate dehydrogenase subunit C) ,
glpF ,
glpT (glycerol-3-phosphate:phosphate antiporter) ,
gltJ (glutamate / aspartate ABC transporter - membrane subunit) ,
gltK (glutamate / aspartate ABC transporter - membrane subunit) ,
gltP (glutamate / aspartate : H+ symporter GltP) ,
gltS (glutamate:sodium symporter) ,
gntP (gluconate / fructuronate transporter GntP) ,
gntT (gluconate transporter GntT) ,
gntU (gluconate transporter GntU) ,
gsiD (glutathione ABC transporter - membrane subunit) ,
gspF (putative protein secretion protein for export) ,
gspO (leader peptidase, integral membrane protein) ,
gudP (galactarate / glucarate / glycerate transporter GudP) ,
hyaC (hydrogenase 1, b-type cytochrome subunit) ,
hybB (predicted hydrogenase 2 cytochrome b type component) ,
hycC (hydrogenase 3, membrane subunit) ,
hycD (hydrogenase 3, membrane subunit) ,
hycF (formate hydrogenlyase complex iron-sulfur protein) ,
idnT (L-idonate / 5-ketogluconate / gluconate transporter IdnT) ,
kch (K+ channel Kch monomer) ,
kdgT (2-dehydro-3-deoxy-D-gluconate:H+ symporter) ,
kdpA (K+ transporting ATPase - K+ channel forming subunit) ,
kdpB (K+ transporting ATPase - ATP binding subunit) ,
kdpC (K+ transporting ATPase - KdpC subunit) ,
kefB (K+ : H+ antiporter KefB) ,
kefC ,
kgtP (α-ketoglutarate:H+ symporter) ,
kup (K+ transporter Kup) ,
lacY (lactose / melibiose:H+ symporter LacY) ,
lepB (leader peptidase (signal peptidase I)) ,
lgoT (galactonate:H+ symporter) ,
lgt (phosphatidylglycerol-prolipoprotein diacylglyceryl transferase) ,
livH (branched chain amino acid transporter - membrane subunit) ,
livM (branched chain amino acid transporter - membrane subunit) ,
lldP ((R)-lactate / (S)-lactate / glycolate:H+ symporter LldP) ,
lptC ,
lptG ,
lpxK (tetraacyldisaccharide 4'-kinase) ,
lpxL (lauroyl acyltransferase) ,
lpxM (myristoyl-acyl carrier protein (ACP)-dependent acyltransferase) ,
lpxP (palmitoleoyl acyltransferase) ,
lspA (prolipoprotein signal peptidase II) ,
lsrC (Autoinducer-2 ABC transporter - membrane subunit) ,
lsrD (Autoinducer-2 ABC transporter - membrane subunit) ,
lysP (lysine:H+ symporter) ,
malF (maltose ABC transporter - membrane subunit) ,
malG (maltose ABC transporter - membrane subunit) ,
manX (mannose PTS permease - ManX subunit) ,
manY (mannose PTS permease - ManY subunit) ,
manZ (mannose PTS permease - ManZ subunit) ,
mdfA (multidrug efflux transporter MdfA (multifunctional)) ,
mdtI (spermidine efflux transporter - MdtI subunit) ,
mdtJ (spermidine efflux transporter - MdtJ subunit) ,
mdtM (multidrug efflux transporter / bile salt:H+ antiporter / Na+:H+ antiporter / K+:H+ antiporter) ,
melB (melibiose:H+/Na+/Li+ symporter) ,
menA (1,4-dihydroxy-2-naphthoate octaprenyltransferase) ,
metI (L-methionine / D-methionine ABC transporter - membrane subunit) ,
mglC (galactose ABC transporter - membrane subunit) ,
mhpT (3-hydroxyphenylpropionate / 3-hydroxycinnamate:H+ symporter) ,
mltC (membrane-bound lytic murein transglycosylase C) ,
mmuP (S-methyl-L-methionine transporter) ,
mngA (2-O-α-mannosyl-D-glycerate PTS permease) ,
mntH (Mn2+ / Fe2+: H+ symporter MntH) ,
mntP (manganese export protein) ,
modB (molybdate ABC transporter - membrane subunit) ,
mraY (phospho-N-acetylmuramoyl-pentapeptide transferase) ,
msbA (ATP-binding lipopolysaccharide transport protein) ,
mtlA ,
mtr (tryptohan / indole:H+ symporter Mtr) ,
murG (N-acetylglucosaminyl transferase) ,
murJ (lipid II flippase) ,
nagE ,
nanT (N-acetylneuraminate:H+ symporter) ,
narI (nitrate reductase A, γ subunit) ,
narK (nitrate:nitrite antiporter NarK) ,
narU (nitrate / nitrite transporter NarU) ,
narV (nitrate reductase Z, γ subunit) ,
nepI (purine ribonucleoside efflux transporter) ,
nhaA ,
nhaB (sodium:H+ antiporter) ,
nikB (nickel ABC transporter - membrane subunit) ,
nikC (nickel ABC transporter - membrane subunit) ,
nirC (nitrite transporter NirC) ,
nrfC (formate-dependent nitrite reductase, 4Fe-4S subunit) ,
nrfD (formate dependent nitrate reductase - NrfD subunit) ,
nuoA (NADH:ubiquinone oxidoreductase, membrane subunit A) ,
nuoH (NADH:ubiquinone oxidoreductase, membrane subunit H) ,
nuoJ (NADH:ubiquinone oxidoreductase, membrane subunit J) ,
nuoK (NADH:ubiquinone oxidoreductase, membrane subunit K) ,
nuoL (NADH:ubiquinone oxidoreductase, membrane subunit L) ,
nuoM (NADH:ubiquinone oxidoreductase, membrane subunit M) ,
nuoN (NADH:ubiquinone oxidoreductase, membrane subunit N) ,
nupC (nucleoside:H+ symporter NupC) ,
nupG (nucleoside:H+ symporter NupG) ,
ompT (outer membrane protease VII (outer membrane protein 3b)) ,
opgB (phosphoglycerol transferase II) ,
opgE (phosphoethanolamine transferase) ,
oppB (murein tripeptide ABC transporter / peptide ABC transporter - putative membrane subunit) ,
oppC (murein tripeptide ABC transporter / peptide ABC transporter - putative membrane subunit) ,
panF (pantothenate:Na+ symporter) ,
pgpA (phosphatidylglycerophosphatase A) ,
pgpB (phosphatidylglycerophosphatase [multifunctional]) ,
pgpC (phosphatidylglycerophosphatase C) ,
pgsA (phosphatidylglycerophosphate synthase) ,
pheP (phenylalanine:H+ symporter PheP) ,
phnE_1 (phosphonate ABC transporter - membrane subunit) ,
phnM (RPnTP hydrolase) ,
pitA ,
pitB (phosphate transporter) ,
plaP (putrescine:H+ symporter PlaP) ,
plsB (glycerol-3-phosphate acyltransferase) ,
plsC (1-acylglycerol-3-phosphate O-acyltransferase) ,
pntA (pyridine nucleotide transhydrogenase, α subunit) ,
pntB (pyridine nucleotide transhydrogenase, β subunit) ,
pnuC (nicotinamide riboside transporter) ,
potB (putrescine / spermidine ABC transporter - membrane subunit) ,
potC (putrescine / spermidine ABC transporter - membrane subunit) ,
potE (putrescine:H+ symporter / putrescine:ornithine antiporter PotE) ,
potH (putrescine ABC transporter - membrane subunit) ,
potI (putrescine ABC transporter - membrane subunit) ,
poxB (pyruvate oxidase monomer) ,
proP ,
proW (glycine betaine / proline ABC transporter - membrane subunit) ,
psd (phosphatidylserine decarboxylase, proenzyme) ,
pssA ,
pstA (phosphate ABC transporter - membrane subunit) ,
pstC (phosphate ABC transporter - membrane subunit) ,
ptsG (glucose PTS permease - PtsG subunit) ,
putP (proline:Na+ symporter) ,
puuP (putrescine:H+ symporter PuuP) ,
pyrD (dihydroorotate dehydrogenase, type 2) ,
rbsC (ribose ABC transporter - membrane subunit) ,
rfbX (O-antigen flippase) ,
rhaT (rhamnose / lyxose:H+ symporter) ,
rhtA (threonine / homoserine efflux transporter) ,
rhtB (homoserine / homoserine lactone efflux transporter) ,
rhtC (RhtC threonine Rht Transporter) ,
rutG (uracil:H+ symporter RutG) ,
sdaC (serine:H+ symporter SdaC) ,
sdhA (succinate:quinone oxidoreductase, FAD binding protein) ,
sdhB (succinate:quinone oxidoreductase, iron-sulfur cluster binding protein) ,
sdhC (succinate:quinone oxidoreductase, membrane protein SdhC) ,
sdhD (succinate:quinone oxidoreductase, membrane protein SdhC) ,
setA (sugar / lactose efflux transporter SetA) ,
setB (sugar / lactose efflux transporter SetB) ,
shiA (shikimate:H+ symporter) ,
sstT (serine / threonine:Na+ symporter) ,
ssuC (aliphatic sulfonate ABC transporter - membrane subunit) ,
tatA ,
tatB ,
tatC ,
tatE ,
tauC (taurine ABC transporter - membrane subunit) ,
tdcC (serine / threonine:H+ symporter TdcC) ,
tehA (tellurite resistance protein / ethidium efflux transporter) ,
tnaB (tryptophan:H+ symporter TnaB) ,
tonB (TonB energy transducing system - TonB subunit) ,
torC (TorC trimethylamine N-oxide reductase, cytochrome c-type subunit) ,
treB (trehalose PTS permease - TreB subunit) ,
trkG (K+ transporter TrkG) ,
trkH (K+ transporter TrkH) ,
ttdT (tartrate:succinate antiporter) ,
uacT (urate:H+ symporter) ,
ubiA (4-hydroxybenzoate octaprenyltransferase) ,
ugpA (glycerol-3-phosphate ABC transporter - membrane subunit) ,
ugpE (glycerol-3-phosphate ABC transporter - membrane subunit) ,
uhpT (hexose-6-phosphate:phosphate antiporter) ,
uidB (glucuronide:H+ symporter) ,
uraA (uracil:H+ symporter UraA) ,
waaH (UDP-glucuronate:LPS(HepIII) glycosyltransferase) ,
waaL (O-antigen ligase) ,
wzxE (lipid III flippase) ,
wzyE (predicted Wzy protein involved in ECA polysaccharide chain elongation) ,
wzzE (Enterobacterial Common Antigen (ECA) polysaccharide chain length modulation protein) ,
xanP (xanthine:H+ symporter XanP) ,
xanQ (xanthine:H+ symporter XanQ) ,
xapB (xanthosine:H+ symporter XapB) ,
xylE (xylose:H+ symporter) ,
xylH (xylose ABC transporter - membrane subunit) ,
yddG (aromatic amino acid exporter) ,
ydeA (arabinose efflux transporter) ,
yiaM (2,3-diketo-L-gulonate:Na+ symporter - membrane subunit) ,
yiaN (2,3-diketo-L-gulonate:Na+ symporter - membrane subunit) ,
yjfF (galactofuranose / galactospyranose ABC transporter - putative membrane subunit) ,
ytfT (galactofuranose / galactopyranose ABC transporter - putative membrane subunit) ,
zitB (Zn2+ / Cd2+ / Ni2+ / Cu2+ efflux transporter ZitB) ,
zntA (zinc, cadmium and lead efflux system) ,
znuB (Zn2+ ABC transporter - membrane subunit)


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Please cite the following article in publications resulting from the use of MetaCyc: Caspi et al, Nucleic Acids Research 42:D459-D471 2014
Page generated by SRI International Pathway Tools version 18.5 on Sat Nov 22, 2014, BIOCYC14A.